diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/static/new/css/bootstrap-custom.css | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/edit_phenotype.html | 401 |
2 files changed, 205 insertions, 200 deletions
diff --git a/wqflask/wqflask/static/new/css/bootstrap-custom.css b/wqflask/wqflask/static/new/css/bootstrap-custom.css index a0d3ff6a..007dcc44 100644 --- a/wqflask/wqflask/static/new/css/bootstrap-custom.css +++ b/wqflask/wqflask/static/new/css/bootstrap-custom.css @@ -3349,6 +3349,10 @@ select[multiple].form-group-lg .form-control { text-align: right; } +.form-horizontal .control-label.text-left{ + text-align: left; +} + .form-horizontal .has-feedback .form-control-feedback { right: 15px; } diff --git a/wqflask/wqflask/templates/edit_phenotype.html b/wqflask/wqflask/templates/edit_phenotype.html index 5458247e..af6fcd98 100644 --- a/wqflask/wqflask/templates/edit_phenotype.html +++ b/wqflask/wqflask/templates/edit_phenotype.html @@ -11,232 +11,233 @@ {% endfor %} {% endif %} {% endwith %} -<div class="page-header text-center"> - <h1>Edit Trait for Published Database</h1> -</div> +<div class="container"> + <div class="page-header text-left"> + <h1>Trait Metadata and Data Editing Form</h1> + </div> -{% if diff %} + {% if diff %} -<div class="container"> - <details class="col-sm-12 col-md-10 col-lg-12"> - <summary> - <h2>Update History</h2> - </summary> - <table class="table"> - <tbody> - <tr> - <th>Timestamp</th> - <th>Editor</th> - <th>Field</th> - <th>Diff</th> - </tr> - {% set ns = namespace(display_cell=True) %} + <div class="container text-left"> + <details class="col-md-12 col-lg-20 col-lg-22"> + <summary> + <h2>Update History</h2> + </summary> + <table class="table"> + <tbody> + <tr> + <th>Timestamp</th> + <th>Editor</th> + <th>Field</th> + <th>Diff</th> + </tr> + {% set ns = namespace(display_cell=True) %} - {% for timestamp, group in diff %} - {% set ns.display_cell = True %} - {% for i in group %} - <tr> - {% if ns.display_cell and i.timestamp == timestamp %} - - {% set author = i.author %} - {% set timestamp_ = i.timestamp %} + {% for timestamp, group in diff %} + {% set ns.display_cell = True %} + {% for i in group %} + <tr> + {% if ns.display_cell and i.timestamp == timestamp %} - {% else %} + {% set author = i.author %} + {% set timestamp_ = i.timestamp %} - {% set author = "" %} - {% set timestamp_ = "" %} + {% else %} - {% endif %} - <td>{{ timestamp_ }}</td> - <td>{{ author }}</td> - <td>{{ i.diff.field }}</td> - <td><pre>{{ i.diff.diff }}</pre></td> - {% set ns.display_cell = False %} - </tr> - {% endfor %} - {% endfor %} - </tbody> - </table> - </details> + {% set author = "" %} + {% set timestamp_ = "" %} -</div> + {% endif %} + <td>{{ timestamp_ }}</td> + <td>{{ author }}</td> + <td>{{ i.diff.field }}</td> + <td><pre>{{ i.diff.diff }}</pre></td> + {% set ns.display_cell = False %} + </tr> + {% endfor %} + {% endfor %} + </tbody> + </table> + </details> -{% endif %} -<form id="edit-form" class="form-horizontal" method="post" action="/datasets/{{dataset_id}}/traits/{{ publish_xref.id_ }}?resource-id={{ resource_id }}" enctype='multipart/form-data'> - <h2 class="text-center">Trait Information:</h2> - <div class="form-group"> - <label for="pubmed-id" class="col-sm-2 control-label">Pubmed ID:</label> - <!-- Do not enter PubMed_ID if this trait has not been Published. - If the PubMed_ID you entered is alreday stored in our - database, all the following fields except Post Publication - Description will be ignored. Do not enter any non-digit - character in this field. --> - <div class="col-sm-8"> - <textarea name="pubmed-id" class="form-control" rows="1">{{ publish_xref.publication_id |default('', true) }}</textarea> - <input name="old_id_" class="changed" type="hidden" value="{{ publish_xref.publication_id |default('', true) }}"/> - </div> - </div> - <div class="form-group"> - <label for="pre-pub-desc" class="col-sm-2 control-label">Pre Publication Description:</label> - <div class="col-sm-8"> - <textarea name="pre-pub-desc" class="form-control" rows="4">{{ phenotype.pre_pub_description |default('', true) }}</textarea> - <input name="old_pre_pub_description" class="changed" type="hidden" value="{{ phenotype.pre_pub_description |default('', true) }}"/> - </div> - <!-- If the PubMed ID is entered, the Post Publication Description - will be shown to all users. If there is no PubMed ID, and the - Pre Publication Description is entered, only you and - authorized users can see the Post Publication Description --> </div> - <div class="form-group"> - <label for="post-pub-desc" class="col-sm-2 control-label">Post Publication Description:</label> - <div class="col-sm-8"> - <textarea name="post-pub-desc" class="form-control" rows="4">{{ phenotype.post_pub_description |default('', true) }}</textarea> - <input name="old_post_pub_description" class="changed" type="hidden" value="{{ phenotype.post_pub_description |default('', true) }}"/> + + {% endif %} + <form id="edit-form" class="form-horizontal" method="post" action="/datasets/{{dataset_id}}/traits/{{ publish_xref.id_ }}?resource-id={{ resource_id }}" enctype='multipart/form-data'> + <div class="form-group"> + <label for="pubmed-id" class="col-sm-3 col-lg-2 control-label text-left">Pubmed ID:</label> + <!-- Do not enter PubMed_ID if this trait has not been Published. + If the PubMed_ID you entered is alreday stored in our + database, all the following fields except Post Publication + Description will be ignored. Do not enter any non-digit + character in this field. --> + <div class="col-sm-7 col-lg-8"> + <textarea name="pubmed-id" class="form-control" rows="1">{{ publish_xref.publication_id |default('', true) }}</textarea> + <input name="old_id_" class="changed" type="hidden" value="{{ publish_xref.publication_id |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="orig-desc" class="col-sm-2 control-label">Original Description:</label> - <div class="col-sm-8"> - <textarea name="orig-desc" class="form-control" rows="4">{{ phenotype.original_description |default('', true) }}</textarea> - <input name="old_original_description" class="changed" type="hidden" value="{{ phenotype.original_description |default('', true) }}"/> + <div class="form-group"> + <label for="pre-pub-desc" class="col-sm-3 col-lg-2 control-label text-left">Pre Publication Description:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="pre-pub-desc" class="form-control" rows="4">{{ phenotype.pre_pub_description |default('', true) }}</textarea> + <input name="old_pre_pub_description" class="changed" type="hidden" value="{{ phenotype.pre_pub_description |default('', true) }}"/> + </div> + <!-- If the PubMed ID is entered, the Post Publication Description + will be shown to all users. If there is no PubMed ID, and the + Pre Publication Description is entered, only you and + authorized users can see the Post Publication Description --> </div> - </div> - <div class="form-group"> - <label for="units" class="col-sm-2 control-label">Units:</label> - <div class="col-sm-8"> - <textarea name="units" class="form-control" rows="1">{{ phenotype.units |default('', true) }}</textarea> - <input name="old_units" class="changed" type="hidden" value="{{ phenotype.units |default('', true) }}"/> + <div class="form-group"> + <label for="post-pub-desc" class="col-sm-3 col-lg-2 control-label text-left">Post Publication Description:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="post-pub-desc" class="form-control" rows="4">{{ phenotype.post_pub_description |default('', true) }}</textarea> + <input name="old_post_pub_description" class="changed" type="hidden" value="{{ phenotype.post_pub_description |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="pre-pub-abbrev" class="col-sm-2 control-label"> - Pre Publication Abbreviation: - </label> - <div class="col-sm-8"> - <textarea name="pre-pub-abbrev" class="form-control" rows="1">{{ phenotype.pre_pub_abbreviation |default('', true) }}</textarea> - <input name="old_pre_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.pre_pub_abbreviation |default('', true) }}"/> + <div class="form-group"> + <label for="orig-desc" class="col-sm-3 col-lg-2 control-label text-left">Original Description:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="orig-desc" class="form-control" rows="4">{{ phenotype.original_description |default('', true) }}</textarea> + <input name="old_original_description" class="changed" type="hidden" value="{{ phenotype.original_description |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="post-pub-abbrev" class="col-sm-2 control-label"> - Post Publication Abbreviation: - </label> - <div class="col-sm-8"> - <textarea name="post-pub-abbrev" class="form-control" rows="1">{{ phenotype.post_pub_abbreviation |default('', true) }}</textarea> - <input name="old_post_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.post_pub_abbreviation |default('', true) }}"/> + <div class="form-group"> + <label for="units" class="col-sm-3 col-lg-2 control-label text-left">Units:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="units" class="form-control" rows="1">{{ phenotype.units |default('', true) }}</textarea> + <input name="old_units" class="changed" type="hidden" value="{{ phenotype.units |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="labcode" class="col-sm-2 control-label"> - Lab Code: - </label> - <div class="col-sm-8"> - <textarea name="labcode" class="form-control" rows="1">{{ phenotype.lab_code |default('', true) }}</textarea> - <input name="old_lab_code" class="changed" type="hidden" value="{{ phenotype.lab_code |default('', true) }}"/> + <div class="form-group"> + <label for="pre-pub-abbrev" class="col-sm-3 col-lg-2 control-label text-left"> + Pre Publication Abbreviation: + </label> + <div class="col-sm-7 col-lg-8"> + <textarea name="pre-pub-abbrev" class="form-control" rows="1">{{ phenotype.pre_pub_abbreviation |default('', true) }}</textarea> + <input name="old_pre_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.pre_pub_abbreviation |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="submitter" class="col-sm-2 control-label"> - Submitter: - </label> - <div class="col-sm-8"> - <textarea name="submitter" class="form-control" rows="1">{{ phenotype.submitter |default('', true) }}</textarea> - <input name="old_submitter" class="changed" type="hidden" value="{{ phenotype.submitter |default('', true) }}"/> + <div class="form-group"> + <label for="post-pub-abbrev" class="col-sm-3 col-lg-2 control-label text-left"> + Post Publication Abbreviation: + </label> + <div class="col-sm-7 col-lg-8"> + <textarea name="post-pub-abbrev" class="form-control" rows="1">{{ phenotype.post_pub_abbreviation |default('', true) }}</textarea> + <input name="old_post_pub_abbreviation" class="changed" type="hidden" value="{{ phenotype.post_pub_abbreviation |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="owner" class="col-sm-2 control-label">Owner:</label> - <div class="col-sm-8"> - <textarea name="owner" class="form-control" rows="1">{{ phenotype.owner |default('', true) }}</textarea> - <input name="old_owner" class="changed" type="hidden" value="{{ phenotype.owner |default('', true) }}"/> + <div class="form-group"> + <label for="labcode" class="col-sm-3 col-lg-2 control-label text-left"> + Lab Code: + </label> + <div class="col-sm-7 col-lg-8"> + <textarea name="labcode" class="form-control" rows="1">{{ phenotype.lab_code |default('', true) }}</textarea> + <input name="old_lab_code" class="changed" type="hidden" value="{{ phenotype.lab_code |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="authorized-users" class="col-sm-2 control-label"> - Authorized Users: - </label> - <div class="col-sm-8"> - <textarea name="authorized-users" class="form-control" rows="1">{{ phenotype.authorized_users |default('', true) }}</textarea> - <input name="old_authorized_users" class="changed" type="hidden" value="{{ phenotype.authorized_users |default('', true) }}"/> + <div class="form-group"> + <label for="submitter" class="col-sm-3 col-lg-2 control-label text-left"> + Submitter: + </label> + <div class="col-sm-7 col-lg-8"> + <textarea name="submitter" class="form-control" rows="1">{{ phenotype.submitter |default('', true) }}</textarea> + <input name="old_submitter" class="changed" type="hidden" value="{{ phenotype.submitter |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="authors" class="col-sm-2 control-label">Authors:</label> - <div class="col-sm-8"> - <textarea name="authors" class="form-control" rows="2">{{ publication.authors |default('', true) }}</textarea> - <input name="old_authors" class="changed" type="hidden" value="{{ publication.authors |default('', true) }}"/> + <div class="form-group"> + <label for="owner" class="col-sm-3 col-lg-2 control-label text-left">Owner:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="owner" class="form-control" rows="1">{{ phenotype.owner |default('', true) }}</textarea> + <input name="old_owner" class="changed" type="hidden" value="{{ phenotype.owner |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="title" class="col-sm-2 control-label">Title:</label> - <div class="col-sm-8"> - <textarea name="title" class="form-control" rows="2">{{ publication.title |default('', true) }}</textarea> - <input name="old_title" class="changed" type="hidden" value="{{ publication.title |default('', true) }}"/> + <div class="form-group"> + <label for="authorized-users" class="col-sm-3 col-lg-2 control-label text-left"> + Authorized Users: + </label> + <div class="col-sm-7 col-lg-8"> + <textarea name="authorized-users" class="form-control" rows="1">{{ phenotype.authorized_users |default('', true) }}</textarea> + <input name="old_authorized_users" class="changed" type="hidden" value="{{ phenotype.authorized_users |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="abstract" class="col-sm-2 control-label">Abstract:</label> - <div class="col-sm-8"> - <textarea name="abstract" class="form-control" rows="6">{{ publication.abstract |default('', true) }}</textarea> - <input name="old_abstract" class="changed" type="hidden" value="{{ publication.abstract |default('', true) }}"/> + <div class="form-group"> + <label for="authors" class="col-sm-3 col-lg-2 control-label text-left">Authors:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="authors" class="form-control" rows="2" placeholder="Example: Roy S, Ingels J, Bohl CJ, McCarty M, Lu L, Mulligan MK, Mozhui K, Centeno A, Williams EG, Auwerx J, Williams RW">{{ publication.authors |default('', true) }}</textarea> + <input name="old_authors" class="changed" type="hidden" value="{{ publication.authors |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="journal" class="col-sm-2 control-label">Journal:</label> - <div class="col-sm-8"> - <textarea name="journal" class="form-control" rows="1">{{ publication.journal |default('', true) }}</textarea> - <input name="old_journal" class="changed" type="hidden" value="{{ publication.journal_ |default('', true) }}"/> + <div class="form-group"> + <label for="title" class="col-sm-3 col-lg-2 control-label text-left">Title:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="title" class="form-control" rows="2">{{ publication.title |default('', true) }}</textarea> + <input name="old_title" class="changed" type="hidden" value="{{ publication.title |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="pages" class="col-sm-2 control-label">Pages:</label> - <div class="col-sm-8"> - <textarea name="pages" class="form-control" rows="1">{{ publication.pages |default('', true) }}</textarea> - <input name="old_pages" class="changed" type="hidden" value="{{ publication.pages |default('', true) }}"/> + <div class="form-group"> + <label for="abstract" class="col-sm-3 col-lg-2 control-label text-left">Abstract:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="abstract" class="form-control" rows="6">{{ publication.abstract |default('', true) }}</textarea> + <input name="old_abstract" class="changed" type="hidden" value="{{ publication.abstract |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="month" class="col-sm-2 control-label">Month:</label> - <div class="col-sm-8"> - <textarea name="month" class="form-control" rows="1">{{ publication.month |default('', true) }}</textarea> - <input name="old_month" class="changed" type="hidden" value="{{ publication.month |default('', true) }}"/> + <div class="form-group"> + <label for="journal" class="col-sm-3 col-lg-2 control-label text-left">Journal:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="journal" class="form-control" rows="1">{{ publication.journal |default('', true) }}</textarea> + <input name="old_journal" class="changed" type="hidden" value="{{ publication.journal_ |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="year" class="col-sm-2 control-label">Year:</label> - <div class="col-sm-8"> - <textarea name="year" class="form-control" rows="1">{{ publication.year |default('', true) }}</textarea> - <input name="old_year" class="changed" type="hidden" value="{{ publication.year |default('', true) }}"/> + <div class="form-group"> + <label for="pages" class="col-sm-3 col-lg-2 control-label text-left">Pages:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="pages" class="form-control" rows="1">{{ publication.pages |default('', true) }}</textarea> + <input name="old_pages" class="changed" type="hidden" value="{{ publication.pages |default('', true) }}"/> + </div> </div> - </div> - <div class="form-group"> - <label for="sequence" class="col-sm-2 control-label">Sequence:</label> - <div class="col-sm-8"> - <textarea name="sequence" class="form-control" rows="6">{{ publish_xref.sequence |default('', true) }}</textarea> - <input name="old_sequence" class="changed" type="hidden" value="{{ publication.sequence |default('', true) }}"/> + <div class="form-group"> + <label for="month" class="col-sm-3 col-lg-2 control-label text-left">Month:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="month" class="form-control" rows="1">{{ publication.month |default('', true) }}</textarea> + <input name="old_month" class="changed" type="hidden" value="{{ publication.month |default('', true) }}"/> + </div> </div> - </div> - <div style="margin-left: 13%;"> - <a href="/datasets/{{ publish_xref.id_ }}/traits/{{ publish_xref.phenotype_id }}/csv?resource-id={{ resource_id }}" class="btn btn-link btn-sm"> - Click to Download CSV Sample Data - </a> - </div> - <div class="form-group"> - <input type = "file" class="col-sm-4 control-label" name = "file" /> - </div> - <div class="col-xs-6"> - <p> - Note: Current allowable sample headers are: {{ ', '.join(headers) }} - </p> - </div> - <div class="controls center-block" style="width: max-content;"> - <input name="inbred-set-id" class="changed" type="hidden" value="{{ publish_xref.inbred_set_id }}"/> - <input name="phenotype-id" class="changed" type="hidden" value="{{ publish_xref.phenotype_id }}"/> - <input name="comments" class="changed" type="hidden" value="{{ publish_xref.comments }}"/> - <input type="submit" style="width: 125px; margin-right: 25px;" class="btn btn-primary form-control col-xs-2 changed" value="Submit Change"> - <input type="reset" style="width: 110px;" class="btn btn-primary form-control col-xs-2 changed" onClick="window.location.reload();" value="Reset"> - </div> -</form> + <div class="form-group"> + <label for="year" class="col-sm-3 col-lg-2 control-label text-left">Year:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="year" class="form-control" rows="1">{{ publication.year |default('', true) }}</textarea> + <input name="old_year" class="changed" type="hidden" value="{{ publication.year |default('', true) }}"/> + </div> + </div> + <div class="form-group"> + <label for="sequence" class="col-sm-3 col-lg-2 control-label text-left">Sequence:</label> + <div class="col-sm-7 col-lg-8"> + <textarea name="sequence" class="form-control" rows="6">{{ publish_xref.sequence |default('', true) }}</textarea> + <input name="old_sequence" class="changed" type="hidden" value="{{ publication.sequence |default('', true) }}"/> + </div> + </div> + <div style="margin-left: 13%;"> + <a href="/datasets/{{ publish_xref.id_ }}/traits/{{ publish_xref.phenotype_id }}/csv?resource-id={{ resource_id }}" class="btn btn-link btn-sm"> + Click to Download CSV Sample Data + </a> + </div> + <div class="form-group"> + <input type = "file" class="col-md-4 control-label text-left" name = "file" /> + </div> + <div class="col-xs-6"> + <p> + Note: Current allowable sample headers are: {{ ', '.join(headers) }} + </p> + </div> + <div class="controls center-block" style="width: max-content;"> + <input name="inbred-set-id" class="changed" type="hidden" value="{{ publish_xref.inbred_set_id }}"/> + <input name="phenotype-id" class="changed" type="hidden" value="{{ publish_xref.phenotype_id }}"/> + <input name="comments" class="changed" type="hidden" value="{{ publish_xref.comments }}"/> + <input type="submit" style="width: 125px; margin-right: 25px;" class="btn btn-success form-control col-xs-2 changed" value="Submit Change"> + <input type="reset" style="width: 110px;" class="btn btn-danger form-control col-xs-2 changed" onClick="window.location.reload();" value="Reset"> + </div> + </form> +</div> {%endblock%} |