diff options
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/wqflask/show_trait/DataEditingPage.py | 69 |
1 files changed, 40 insertions, 29 deletions
diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py index 38ab8c90..cbda3e41 100755 --- a/wqflask/wqflask/show_trait/DataEditingPage.py +++ b/wqflask/wqflask/show_trait/DataEditingPage.py @@ -1,3 +1,5 @@ +from __future__ import absolute_import, print_function, division + import string import os import cPickle @@ -13,6 +15,7 @@ from dbFunction import webqtlDatabaseFunction from base.templatePage import templatePage from basicStatistics import BasicStatisticsFunctions +from pprint import pformat as pf ######################################### # DataEditingPage @@ -1659,32 +1662,32 @@ class DataEditingPage(templatePage): break mainForm = None # Just trying to get things working - primary_body = self.addTrait2Table(fd=fd, varianceDataPage=varianceDataPage, strainlist=allstrainlist_neworder, mainForm=mainForm, thisTrait=thisTrait, other_strainsExist=other_strainsExist, attribute_ids=attribute_ids, attribute_names=attribute_names, strains='primary') + primary_strains = self.addTrait2Table(fd=fd, varianceDataPage=varianceDataPage, strainlist=allstrainlist_neworder, mainForm=mainForm, thisTrait=thisTrait, other_strainsExist=other_strainsExist, attribute_ids=attribute_ids, attribute_names=attribute_names, strains='primary') #primary_table.append(primary_header) - for i in range(len(primary_body)): - print("hji") - pass + #for i in range(len(primary_body)): + # print("hji") + # pass #primary_table.append(primary_body[i]) other_strains = [] for strain in thisTrait.data.keys(): print("hjk - strain is:", strain) if strain not in allstrainlist_neworder: - pass - #allstrainlist_neworder.append(strain) - #other_strains.append(strain) + #pass + allstrainlist_neworder.append(strain) + other_strains.append(strain) if other_strains: - other_table = HT.TableLite(cellspacing=0, cellpadding=0, Id="sortable2", Class="tablesorter") #Table object with other (for example, non-BXD / MDP) traits - other_header = self.getTableHeader(fd=fd, thisTrait=thisTrait, nCols=nCols, attribute_names=attribute_names) #Generate header for other table object; same function is used as the one used for the primary table, since the header is the same + #other_table = HT.TableLite(cellspacing=0, cellpadding=0, Id="sortable2", Class="tablesorter") #Table object with other (for example, non-BXD / MDP) traits + #other_header = self.getTableHeader(fd=fd, thisTrait=thisTrait, nCols=nCols, attribute_names=attribute_names) #Generate header for other table object; same function is used as the one used for the primary table, since the header is the same other_strains.sort() #Sort other strains other_strains = map(lambda X:"_2nd_"+X, fd.f1list + fd.parlist) + other_strains #Append F1 and parent strains to the beginning of the sorted list of other strains - MDPText = HT.Span("Samples:", Class="ffl fwb fs12") - MDPMenu1 = HT.Select(name='MDPChoice1') - MDPMenu2 = HT.Select(name='MDPChoice2') - MDPMenu3 = HT.Select(name='MDPChoice3') + #MDPText = HT.Span("Samples:", Class="ffl fwb fs12") + #MDPMenu1 = HT.Select(name='MDPChoice1') + #MDPMenu2 = HT.Select(name='MDPChoice2') + #MDPMenu3 = HT.Select(name='MDPChoice3') #MDPMenu1.append(('%s Only' % fd.RISet,'1')) #MDPMenu2.append(('%s Only' % fd.RISet,'1')) #MDPMenu3.append(('%s Only' % fd.RISet,'1')) @@ -1698,12 +1701,12 @@ class DataEditingPage(templatePage): #self.MDPRow2.append(HT.TD(MDPText),HT.TD(MDPMenu2)) #self.MDPRow3.append(HT.TD(MDPText),HT.TD(MDPMenu3)) - other_body = self.addTrait2Table(fd=fd, varianceDataPage=varianceDataPage, strainlist=other_strains, mainForm=mainForm, thisTrait=thisTrait, attribute_ids=attribute_ids, attribute_names=attribute_names, strains='other') + other_strains = self.addTrait2Table(fd=fd, varianceDataPage=varianceDataPage, strainlist=other_strains, mainForm=mainForm, thisTrait=thisTrait, attribute_ids=attribute_ids, attribute_names=attribute_names, strains='other') #other_table.append(other_header) - for i in range(len(other_body)): - print("hjn") - pass + #for i in range(len(other_body)): + # print("hjn") + # pass #other_table.append(other_body[i]) else: pass @@ -1721,11 +1724,13 @@ class DataEditingPage(templatePage): #primary_div = HT.Div(primary_table, Id="primary") #Container for table with primary (for example, BXD) strain values #container.append(primary_div) - if other_strains: - other_div = HT.Div(other_table, Id="other") #Container for table with other (for example, Non-BXD/MDP) strain values + #if other_strains: + # other_div = HT.Div(other_table, Id="other") #Container for table with other (for example, Non-BXD/MDP) strain values #container.append(HT.Div(' ', height=30)) #container.append(other_div) + self.primary_strains = primary_strains + self.other_strains = other_strains #table.append(HT.TR(HT.TD(container))) #title5Body.append(table) @@ -1750,6 +1755,8 @@ class DataEditingPage(templatePage): upperBound, lowerBound = Plot.findOutliers(vals) # ZS: Values greater than upperBound or less than lowerBound are considered outliers. + the_strains = [] + for i, strainNameOrig in enumerate(strainlist): strain = {} print("zyt - strainNameOrig:", strainNameOrig) @@ -1777,7 +1784,7 @@ class DataEditingPage(templatePage): traitVal = '' dispVal = 'x' - strain['strain_name'] = StrainName + strain['strain_name'] = strainName strainNameDisp = HT.Span(strainName, Class='fs14 fwn ffl') if varianceDataPage: @@ -1836,25 +1843,28 @@ class DataEditingPage(templatePage): #seField = HT.Input(name='V'+strainNameOrig, size=8, maxlength=8, style="text-align:right", value=dispVar, # onChange= "javascript:this.form['V%s'].value=this.form['V%s'].value;" % (strainNameOrig.replace("/", ""), strainNameOrig.replace("/", "")), Class=varClassName) - if (strains == 'primary'): - strain[the_id] = "Primary_" + str(i+1) + if strains == 'primary': + strain['the_id'] = "Primary_" + str(i+1) #table_row = HT.TR(Id="Primary_"+str(i+1), Class=rowClassName) else: - strain[the_id] = "Other_" + str(i+1) + strain['the_id'] = "Other_" + str(i+1) #table_row = HT.TR(Id="Other_"+str(i+1), Class=rowClassName) - if varianceDataPage: + strain['value'] = traitVal + + strain['se'] = dispVar + #if varianceDataPage: #table_row.append(HT.TD(str(i+1), selectCheck, width=45, align='right', Class=className)) #table_row.append(HT.TD(strainNameDisp, strainNameAdd, align='right', width=100, Class=className)) #table_row.append(HT.TD(valueField, width=70, align='right', Id="value_"+str(i)+"_"+strains, Class=className)) #table_row.append(HT.TD("±", width=20, align='center', Class=className)) #table_row.append(HT.TD(seField, width=80, align='right', Id="SE_"+str(i)+"_"+strains, Class=className)) - pass - else: + #pass + #else: #table_row.append(HT.TD(str(i+1), selectCheck, width=45, align='right', Class=className)) #table_row.append(HT.TD(strainNameDisp, strainNameAdd, align='right', width=100, Class=className)) #table_row.append(HT.TD(valueField, width=70, align='right', Id="value_"+str(i)+"_"+strains, Class=className)) - pass + #pass if thisTrait and thisTrait.db and thisTrait.db.type =='ProbeSet': if len(attribute_ids) > 0: @@ -1892,9 +1902,10 @@ class DataEditingPage(templatePage): attr_className = str(attributeValue) + " " + className table_row.append(HT.TD(attr_container, align='right', Class=attr_className)) attr_counter += 1 - + the_strains.append(strain) #table_body.append(table_row) - return table_body + print("*the_strains are [%i]: %s" % (len(the_strains), pf(the_strains))) + return the_strains def getTableHeader(self, fd, thisTrait, nCols, attribute_names): |