diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/__init__.py | 5 | ||||
| -rw-r--r-- | wqflask/wqflask/group_manager.py | 332 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/show_trait/show_trait.py | 14 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/css/jupyter_notebooks.css | 16 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/group_manager.js | 13 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/admin/create_group.html | 9 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/admin/group_manager.html | 30 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/admin/view_group.html | 55 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/base.html | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/jupyter_notebooks.html | 4 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/search_result_page.html | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/show_trait_details.html | 2 |
13 files changed, 260 insertions, 228 deletions
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py index fbf1c9f5..05e040ed 100644 --- a/wqflask/wqflask/__init__.py +++ b/wqflask/wqflask/__init__.py @@ -10,8 +10,9 @@ from urllib.parse import urlparse from utility import formatting from gn3.authentication import DataRole, AdminRole -from wqflask.resource_manager import resource_management +from wqflask.group_manager import group_management +from wqflask.resource_manager import resource_management from wqflask.metadata_edits import metadata_edit from wqflask.api.markdown import glossary_blueprint @@ -65,8 +66,8 @@ app.register_blueprint(news_blueprint, url_prefix="/news") app.register_blueprint(jupyter_notebooks, url_prefix="/jupyter_notebooks") app.register_blueprint(resource_management, url_prefix="/resource-management") - app.register_blueprint(metadata_edit, url_prefix="/datasets/") +app.register_blueprint(group_management, url_prefix="/group-management") @app.before_request def before_request(): diff --git a/wqflask/wqflask/group_manager.py b/wqflask/wqflask/group_manager.py index 04a100ba..3936e36e 100644 --- a/wqflask/wqflask/group_manager.py +++ b/wqflask/wqflask/group_manager.py @@ -1,175 +1,157 @@ -import random -import string - -from flask import (Flask, g, render_template, url_for, request, make_response, - redirect, flash) - -from wqflask import app -from wqflask.user_login import send_verification_email, send_invitation_email, basic_info, set_password - -from utility.redis_tools import get_user_groups, get_group_info, save_user, create_group, delete_group, add_users_to_group, remove_users_from_group, \ - change_group_name, save_verification_code, check_verification_code, get_user_by_unique_column, get_resources, get_resource_info - -from utility.logger import getLogger -logger = getLogger(__name__) - - -@app.route("/groups/manage", methods=('GET', 'POST')) -def manage_groups(): - params = request.form if request.form else request.args - if "add_new_group" in params: - return redirect(url_for('add_group')) - else: - admin_groups, member_groups = get_user_groups(g.user_session.user_id) - return render_template("admin/group_manager.html", admin_groups=admin_groups, member_groups=member_groups) - - -@app.route("/groups/view", methods=('GET', 'POST')) -def view_group(): - params = request.form if request.form else request.args - group_id = params['id'] - group_info = get_group_info(group_id) - admins_info = [] - user_is_admin = False - if g.user_session.user_id in group_info['admins']: - user_is_admin = True - for user_id in group_info['admins']: - if user_id: - user_info = get_user_by_unique_column("user_id", user_id) - admins_info.append(user_info) - members_info = [] - for user_id in group_info['members']: - if user_id: - user_info = get_user_by_unique_column("user_id", user_id) - members_info.append(user_info) - - # ZS: This whole part might not scale well with many resources - resources_info = [] - all_resources = get_resources() - for resource_id in all_resources: - resource_info = get_resource_info(resource_id) - group_masks = resource_info['group_masks'] - if group_id in group_masks: - this_resource = {} - privileges = group_masks[group_id] - this_resource['id'] = resource_id - this_resource['name'] = resource_info['name'] - this_resource['data'] = privileges['data'] - this_resource['metadata'] = privileges['metadata'] - this_resource['admin'] = privileges['admin'] - resources_info.append(this_resource) - - return render_template("admin/view_group.html", group_info=group_info, admins=admins_info, members=members_info, user_is_admin=user_is_admin, resources=resources_info) - - -@app.route("/groups/remove", methods=('POST',)) -def remove_groups(): - group_ids_to_remove = request.form['selected_group_ids'] - for group_id in group_ids_to_remove.split(":"): - delete_group(g.user_session.user_id, group_id) - - return redirect(url_for('manage_groups')) - - -@app.route("/groups/remove_users", methods=('POST',)) -def remove_users(): - group_id = request.form['group_id'] - admin_ids_to_remove = request.form['selected_admin_ids'] - member_ids_to_remove = request.form['selected_member_ids'] - - remove_users_from_group(g.user_session.user_id, admin_ids_to_remove.split( - ":"), group_id, user_type="admins") - remove_users_from_group(g.user_session.user_id, member_ids_to_remove.split( - ":"), group_id, user_type="members") - - return redirect(url_for('view_group', id=group_id)) - - -@app.route("/groups/add_<path:user_type>", methods=('POST',)) -def add_users(user_type='members'): - group_id = request.form['group_id'] - if user_type == "admins": - user_emails = request.form['admin_emails_to_add'].split(",") - add_users_to_group(g.user_session.user_id, group_id, - user_emails, admins=True) - elif user_type == "members": - user_emails = request.form['member_emails_to_add'].split(",") - add_users_to_group(g.user_session.user_id, group_id, - user_emails, admins=False) - - return redirect(url_for('view_group', id=group_id)) - - -@app.route("/groups/change_name", methods=('POST',)) -def change_name(): - group_id = request.form['group_id'] - new_name = request.form['new_name'] - group_info = change_group_name(g.user_session.user_id, group_id, new_name) - - return new_name - - -@app.route("/groups/create", methods=('GET', 'POST')) -def add_or_edit_group(): - params = request.form if request.form else request.args - if "group_name" in params: - member_user_ids = set() - admin_user_ids = set() - # ZS: Always add the user creating the group as an admin - admin_user_ids.add(g.user_session.user_id) - if "admin_emails_to_add" in params: - admin_emails = params['admin_emails_to_add'].split(",") - for email in admin_emails: - user_details = get_user_by_unique_column( - "email_address", email) - if user_details: - admin_user_ids.add(user_details['user_id']) - #send_group_invites(params['group_id'], user_email_list = admin_emails, user_type="admins") - if "member_emails_to_add" in params: - member_emails = params['member_emails_to_add'].split(",") - for email in member_emails: - user_details = get_user_by_unique_column( - "email_address", email) - if user_details: - member_user_ids.add(user_details['user_id']) - #send_group_invites(params['group_id'], user_email_list = user_emails, user_type="members") - - create_group(list(admin_user_ids), list( - member_user_ids), params['group_name']) - return redirect(url_for('manage_groups')) - else: - return render_template("admin/create_group.html") - -# ZS: Will integrate this later, for now just letting users be added directly - - -def send_group_invites(group_id, user_email_list=[], user_type="members"): - for user_email in user_email_list: - user_details = get_user_by_unique_column("email_address", user_email) - if user_details: - group_info = get_group_info(group_id) - # ZS: Probably not necessary since the group should normally always exist if group_id is being passed here, - # but it's technically possible to hit it if Redis is cleared out before submitting the new users or something - if group_info: - # ZS: Don't add user if they're already an admin or if they're being added a regular user and are already a regular user, - # but do add them if they're a regular user and are added as an admin - if (user_details['user_id'] in group_info['admins']) or \ - ((user_type == "members") and (user_details['user_id'] in group_info['members'])): - continue - else: - send_verification_email(user_details, template_name="email/group_verification.txt", - key_prefix="verification_code", subject="You've been invited to join a GeneNetwork user group") - else: - temp_password = ''.join(random.choice( - string.ascii_uppercase + string.digits) for _ in range(6)) - user_details = { - 'user_id': str(uuid.uuid4()), - 'email_address': user_email, - 'registration_info': basic_info(), - 'password': set_password(temp_password), - 'confirmed': 0 - } - save_user(user_details, user_details['user_id']) - send_invitation_email(user_email, temp_password) - -# @app.route() +import json +import redis +import datetime + +from flask import current_app +from flask import Blueprint +from flask import g +from flask import render_template +from flask import request +from flask import redirect +from flask import url_for +from gn3.authentication import get_groups_by_user_uid +from gn3.authentication import get_user_info_by_key +from gn3.authentication import create_group +from wqflask.decorators import login_required + +group_management = Blueprint("group_management", __name__) + + +@group_management.route("/groups") +@login_required +def display_groups(): + groups = get_groups_by_user_uid( + user_uid=(g.user_session.record.get(b"user_id", + b"").decode("utf-8") or + g.user_session.record.get("user_id", "")), + conn=redis.from_url( + current_app.config["REDIS_URL"], + decode_responses=True)) + return render_template("admin/group_manager.html", + admin_groups=groups.get("admin"), + member_groups=groups.get("member")) + + +@group_management.route("/groups/create", methods=("GET",)) +@login_required +def view_create_group_page(): + return render_template("admin/create_group.html") + + +@group_management.route("/groups/create", methods=("POST",)) +@login_required +def create_new_group(): + conn = redis.from_url(current_app.config["REDIS_URL"], + decode_responses=True) + if group_name := request.form.get("group_name"): + members_uid, admins_uid = set(), set() + admins_uid.add(user_uid := ( + g.user_session.record.get( + b"user_id", + b"").decode("utf-8") or + g.user_session.record.get("user_id", ""))) + if admin_string := request.form.get("admin_emails_to_add"): + for email in admin_string.split(","): + user_info = get_user_info_by_key(key="email_address", + value=email, + conn=conn) + if user_uid := user_info.get("user_id"): + admins_uid.add(user_uid) + if member_string := request.form.get("member_emails_to_add"): + for email in member_string.split(","): + user_info = get_user_info_by_key(key="email_address", + value=email, + conn=conn) + if user_uid := user_info.get("user_id"): + members_uid.add(user_uid) + + # Create the new group: + create_group(conn=conn, + group_name=group_name, + member_user_uids=list(members_uid), + admin_user_uids=list(admins_uid)) + return redirect(url_for('group_management.display_groups')) + return redirect(url_for('group_management.create_groups')) + + +@group_management.route("/groups/delete", methods=("POST",)) +@login_required +def delete_groups(): + conn = redis.from_url(current_app.config["REDIS_URL"], + decode_responses=True) + user_uid = (g.user_session.record.get(b"user_id", b"").decode("utf-8") or + g.user_session.record.get("user_id", "")) + current_app.logger.info(request.form.get("selected_group_ids")) + for group_uid in request.form.get("selected_group_ids", "").split(":"): + if group_info := conn.hget("groups", group_uid): + group_info = json.loads(group_info) + # A user who is an admin can delete things + if user_uid in group_info.get("admins"): + conn.hdel("groups", group_uid) + return redirect(url_for('group_management.display_groups')) + + +@group_management.route("/groups/<group_id>") +@login_required +def view_group(group_id: str): + conn = redis.from_url(current_app.config["REDIS_URL"], + decode_responses=True) + user_uid = (g.user_session.record.get(b"user_id", b"").decode("utf-8") or + g.user_session.record.get("user_id", "")) + + resource_info = [] + for resource_uid, resource in conn.hgetall("resources").items(): + resource = json.loads(resource) + if group_id in (group_mask := resource.get("group_masks")): + __dict = {} + for val in group_mask.values(): + __dict.update(val) + __dict.update({ + "id": resource_uid, + "name": resource.get("name"), + }) + resource_info.append(__dict) + group_info = json.loads(conn.hget("groups", + group_id)) + group_info["guid"] = group_id + + return render_template( + "admin/view_group.html", + group_info=group_info, + admins=[get_user_info_by_key(key="user_id", + value=user_id, + conn=conn) + for user_id in group_info.get("admins")], + members=[get_user_info_by_key(key="user_id", + value=user_id, + conn=conn) + for user_id in group_info.get("members")], + is_admin = (True if user_uid in group_info.get("admins") else False), + resources=resource_info) + + +@group_management.route("/groups/<group_id>", methods=("POST",)) +def update_group(group_id: str): + conn = redis.from_url(current_app.config["REDIS_URL"], + decode_responses=True) + user_uid = (g.user_session.record.get(b"user_id", b"").decode("utf-8") or + g.user_session.record.get("user_id", "")) + group = json.loads(conn.hget("groups", group_id)) + timestamp = group["changed_timestamp"] + timestamp_ = datetime.datetime.utcnow().strftime('%b %d %Y %I:%M%p') + if user_uid in group.get("admins"): + if name := request.form.get("new_name"): + group["name"] = name + group["changed_timestamp"] = timestamp_ + if admins := request.form.get("admin_emails_to_add"): + group["admins"] = list(set(admins.split(":") + + group.get("admins"))) + group["changed_timestamp"] = timestamp_ + if members := request.form.get("member_emails_to_add"): + print(f"\n+++++\n{members}\n+++++\n") + group["members"] = list(set(members.split(":") + + group.get("members"))) + group["changed_timestamp"] = timestamp_ + conn.hset("groups", group_id, json.dumps(group)) + return redirect(url_for('group_management.view_group', + group_id=group_id)) diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 5ca1f9ca..33f9319c 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -62,8 +62,10 @@ class SearchResultPage: self.search_term_exists = True self.results = [] + max_result_count = 100000 # max number of results to display type = kw.get('type') if type == "Phenotypes": # split datatype on type field + max_result_count = 50000 dataset_type = "Publish" elif type == "Genotypes": dataset_type = "Geno" @@ -81,7 +83,7 @@ class SearchResultPage: self.too_many_results = False if self.search_term_exists: - if len(self.results) > 50000: + if len(self.results) > max_result_count: self.trait_list = [] self.too_many_results = True else: diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index 6020bc16..93f95852 100644 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -40,10 +40,17 @@ ONE_YEAR = 60 * 60 * 24 * 365 class ShowTrait: def __init__(self, user_id, kw): + self.admin_status = None if 'trait_id' in kw and kw['dataset'] != "Temp": self.temp_trait = False self.trait_id = kw['trait_id'] helper_functions.get_species_dataset_trait(self, kw) + self.resource_id = get_resource_id(self.dataset, + self.trait_id) + self.admin_status = get_highest_user_access_role( + user_id=user_id, + resource_id=(self.resource_id or ""), + gn_proxy_url=GN_PROXY_URL) elif 'group' in kw: self.temp_trait = True self.trait_id = "Temp_" + kw['species'] + "_" + kw['group'] + \ @@ -71,12 +78,7 @@ class ShowTrait: name=self.trait_id, cellid=None) self.trait_vals = Redis.get(self.trait_id).split() - self.resource_id = get_resource_id(self.dataset, - self.trait_id) - self.admin_status = get_highest_user_access_role( - user_id=user_id, - resource_id=(self.resource_id or ""), - gn_proxy_url=GN_PROXY_URL) + # ZS: Get verify/rna-seq link URLs try: blatsequence = self.this_trait.blatseq diff --git a/wqflask/wqflask/static/new/css/jupyter_notebooks.css b/wqflask/wqflask/static/new/css/jupyter_notebooks.css new file mode 100644 index 00000000..db972a17 --- /dev/null +++ b/wqflask/wqflask/static/new/css/jupyter_notebooks.css @@ -0,0 +1,16 @@ +.jupyter-links { + padding: 1.5em; +} + +.jupyter-links:nth-of-type(2n) { + background: #EEEEEE; +} + +.jupyter-links .main-link { + font-size: larger; + display: block; +} + +.jupyter-links .src-link { + font-size: smaller; +} diff --git a/wqflask/wqflask/static/new/javascript/group_manager.js b/wqflask/wqflask/static/new/javascript/group_manager.js index 4c172cbf..cd56133a 100644 --- a/wqflask/wqflask/static/new/javascript/group_manager.js +++ b/wqflask/wqflask/static/new/javascript/group_manager.js @@ -16,23 +16,22 @@ $('#clear_members').click(function(){ function add_emails(user_type){ - var email_address = $('input[name=user_email]').val(); - var email_list_string = $('input[name=' + user_type + '_emails_to_add]').val().trim() - console.log(email_list_string) + let email_address = $('input[name=user_email]').val(); + let email_list_string = $('input[name=' + user_type + '_emails_to_add]').val().trim() if (email_list_string == ""){ - var email_set = new Set(); + let email_set = new Set(); } else { - var email_set = new Set(email_list_string.split(",")) + let email_set = new Set(email_list_string.split(",")) } email_set.add(email_address) $('input[name=' + user_type + '_emails_to_add]').val(Array.from(email_set).join(',')) - var emails_display_string = Array.from(email_set).join('\n') + let emails_display_string = Array.from(email_set).join('\n') $('.added_' + user_type + 's').val(emails_display_string) } function clear_emails(user_type){ $('input[name=' + user_type + '_emails_to_add]').val("") $('.added_' + user_type + 's').val("") -}
\ No newline at end of file +} diff --git a/wqflask/wqflask/templates/admin/create_group.html b/wqflask/wqflask/templates/admin/create_group.html index 21ef5653..b1d214ea 100644 --- a/wqflask/wqflask/templates/admin/create_group.html +++ b/wqflask/wqflask/templates/admin/create_group.html @@ -6,7 +6,8 @@ <div class="page-header"> <h1>Create Group</h1> </div> - <form action="/groups/create" method="POST"> + <form action="{{ url_for('group_management.create_new_group') }}" + method="POST"> <input type="hidden" name="admin_emails_to_add" value=""> <input type="hidden" name="member_emails_to_add" value=""> <fieldset> @@ -73,17 +74,11 @@ </form> </div> - - <!-- End of body --> - {% endblock %} {% block js %} <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='DataTables/js/jquery.js') }}"></script> <script language="javascript" type="text/javascript" src="/static/new/javascript/group_manager.js"></script> <script language="javascript" type="text/javascript" src="{{ url_for('js', filename='js_alt/underscore.min.js') }}"></script> - - <script type="text/javascript" charset="utf-8"> - </script> {% endblock %} diff --git a/wqflask/wqflask/templates/admin/group_manager.html b/wqflask/wqflask/templates/admin/group_manager.html index 692a7abc..eedfe138 100644 --- a/wqflask/wqflask/templates/admin/group_manager.html +++ b/wqflask/wqflask/templates/admin/group_manager.html @@ -12,8 +12,15 @@ <h1>Manage Groups</h1> {% if admin_groups|length != 0 or member_groups|length != 0 %} <div style="display: inline;"> - <button type="button" id="create_group" class="btn btn-primary" data-url="/groups/create">Create Group</button> - <button type="button" id="remove_groups" class="btn btn-primary" data-url="/groups/remove">Remove Selected Groups</button> + <a href="{{ url_for('group_management.view_create_group_page') }}" target="_blank"> + <button type="button" class="btn btn-primary"> + Create Group + </button> + </a> + <button type="button" id="remove_groups" class="btn btn-primary" + data-url="{{ url_for('group_management.delete_groups') }}"> + Remove Selected Groups + </button> </div> {% endif %} </div> @@ -23,7 +30,11 @@ {% if admin_groups|length == 0 and member_groups|length == 0 %} <h4>You currently aren't a member or admin of any groups.</h4> <br> - <button type="button" id="create_group" class="btn btn-primary" data-url="/groups/create">Create a new group</button> + <a href="{{ url_for('group_management.view_create_group_page') }}" target="_blank"> + <button type="button" class="btn btn-primary"> + Create Group + </button> + </a> {% else %} <div style="margin-top: 20px;"><h2>Admin Groups</h2></div> <hr> @@ -47,11 +58,12 @@ <tr> <td><input type="checkbox" name="group_id" value="{{ group.id }}"></td> <td align="right">{{ loop.index }}</td> - <td><a href="/groups/view?id={{ group.id }}">{{ group.name }}</a></td> + {% set group_url = url_for('group_management.view_group', group_id=group.uuid) %} + <td><a href="{{ group_url }}">{{ group.name }}</a></td> <td align="right">{{ group.admins|length + group.members|length }}</td> <td>{{ group.created_timestamp }}</td> <td>{{ group.changed_timestamp }}</td> - <td>{{ group.id }}</td> + <td>{{ group.uuid }}</td> </tr> {% endfor %} </tbody> @@ -81,7 +93,8 @@ <tr> <td><input type="checkbox" name="read" value="{{ group.id }}"></td> <td>{{ loop.index }}</td> - <td><a href="/groups/view?id={{ group.id }}">{{ group.name }}</a></td> + {% set group_url = url_for('group_management.view_group', group_id=group.uuid) %} + <td><a href="{{ group_url }}">{{ group.name }}</a></td> <td>{{ group.admins|length + group.members|length }}</td> <td>{{ group.created_timestamp }}</td> <td>{{ group.changed_timestamp }}</td> @@ -119,11 +132,6 @@ return $("#groups_form").submit(); }; - $("#create_group").on("click", function() { - url = $(this).data("url") - return submit_special(url) - }); - $("#remove_groups").on("click", function() { url = $(this).data("url") groups = [] diff --git a/wqflask/wqflask/templates/admin/view_group.html b/wqflask/wqflask/templates/admin/view_group.html index 26692fe8..c88ce0e7 100644 --- a/wqflask/wqflask/templates/admin/view_group.html +++ b/wqflask/wqflask/templates/admin/view_group.html @@ -1,26 +1,30 @@ {% extends "base.html" %} {% block title %}View and Edit Group{% endblock %} {% block css %} - <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> - <link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}" /> - <link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTables/css/jquery.dataTables.css') }}" /> +<link rel="stylesheet" type="text/css" href="{{ url_for('css', filename='DataTablesExtensions/buttonStyles/css/buttons.dataTables.min.css') }}" /> +<link rel="stylesheet" type="text/css" href="/static/new/css/show_trait.css" /> {% endblock %} {% block content %} <!-- Start of body --> - <div class="container"> +{% set GROUP_URL = url_for('group_management.view_group', group_id=group_info.guid) %} +{% set UPDATE_GROUP_URL = url_for('group_management.update_group', group_id=group_info.guid) %} +<div class="container"> <div class="page-header"> <h1> - <span id="group_name">{{ group_info.name }}</span> - <input type="text" name="new_group_name" style="font-size: 20px; display: none; width: 500px;" class="form-control" placeholder="{{ group_info.name }}"> + <span id="group_name">Name: {{ group_info.name }}</span> + <input type="text" name="new_group_name" style="font-size: 20px; display: none; width: 500px;" class="form-control" placeholder="{{ group_info.name }}"> + {% if is_admin %} <button class="btn btn-default" style="display: inline;" id="change_group_name">Change Group Name</button> + {% endif %} </h1> - {% if user_is_admin == true %} + {% if is_admin %} <div style="display: inline;"> <button type="button" id="remove_users" class="btn btn-danger" data-url="/groups/remove_users">Remove Selected Users from Group</button> </div> {% endif %} </div> - <form id="group_form" action="/groups/view" method="POST"> + <form id="group_form" action="{{ UPDATE_GROUP_URL }}" method="POST"> <input type="hidden" name="group_id" value="{{ group_info.id }}"> <input type="hidden" name="selected_admin_ids" value=""> <input type="hidden" name="selected_member_ids" value=""> @@ -37,6 +41,9 @@ <th>Name</th> <th>Email Address</th> <th>Organization</th> + {% if is_admin %} + <th>UID</th> + {% endif %} </tr> </thead> <tbody> @@ -47,17 +54,20 @@ <td>{% if 'full_name' in admin %}{{ admin.full_name }}{% elif 'name' in admin %}{{ admin.name }}{% else %}N/A{% endif %}</td> <td>{% if 'email_address' in admin %}{{ admin.email_address }}{% else %}N/A{% endif %}</td> <td>{% if 'organization' in admin %}{{ admin.organization }}{% else %}N/A{% endif %}</td> + {% if is_admin %} + <td>{{admin.user_id}}</td> + {% endif %} </tr> {% endfor %} </tbody> </table> - {% if user_is_admin == true %} + {% if is_admin %} <div style="margin-top: 20px;"> <span>E-mail of user to add to admins (multiple e-mails can be added separated by commas):</span> <input type="text" size="60" name="admin_emails_to_add" placeholder="Enter E-mail(s)" value=""> </div> <div style="margin-bottom: 30px; margin-top: 20px;"> - <button type="button" id="add_admins" class="btn btn-primary" data-usertype="admin" data-url="/groups/add_admins">Add Admin(s)</button> + <button type="button" id="add_admins" class="btn btn-primary" data-usertype="admin" data-url="{{ UPDATE_GROUP_URL }}">Add Admin(s)</button> </div> {% endif %} </div> @@ -74,38 +84,50 @@ <th>Name</th> <th>Email Address</th> <th>Organization</th> + {% if is_admin %} + <th>UID</th> + {% endif %} </tr> </thead> <tbody> {% for member in members %} <tr> - <td style="text-align: center; padding: 0px 10px 2px 10px;"><input type="checkbox" name="member_id" value="{{ member.user_id }}"></td> + + <td style="text-align: center; padding: 0px 10px 2px 10px;"> + {% if is_admin %} + <input type="checkbox" name="member_id" value="{{ member.user_id }}"> + {% endif %} + </td> <td align="right">{{ loop.index }}</td> <td>{% if 'full_name' in member %}{{ member.full_name }}{% elif 'name' in admin %}{{ admin.name }}{% else %}N/A{% endif %}</td> <td>{% if 'email_address' in member %}{{ member.email_address }}{% else %}N/A{% endif %}</td> <td>{% if 'organization' in member %}{{ member.organization }}{% else %}N/A{% endif %}</td> + {% if is_admin %} + <td>{{ member }}</td> + {% endif %} + </tr> {% endfor %} </tbody> </table> - {% if user_is_admin == true %} + {% if is_admin %} <div style="margin-top: 20px;"> <span>E-mail of user to add to members (multiple e-mails can be added separated by commas):</span> <input type="text" size="60" name="member_emails_to_add" placeholder="Enter E-mail(s)" value=""> </div> <div style="margin-bottom: 30px; margin-top: 20px;"> - <button type="button" id="add_members" class="btn btn-primary" data-usertype="member" data-url="/groups/add_members">Add Member(s)</button> + <button type="button" id="add_members" class="btn btn-primary" data-usertype="member" data-url="{{ GROUP_URL }}">Add Member(s)</button> </div> {% endif %} {% else %} There are currently no members in this group. - {% if user_is_admin == true %} + {% if is_admin %} <div style="margin-top: 20px;"> <span>E-mail of user to add to members (multiple e-mails can be added separated by commas):</span> <input type="text" size="60" name="member_emails_to_add" placeholder="Enter E-mail(s)" value=""> </div> <div style="margin-bottom: 30px; margin-top: 20px;"> - <button type="button" id="add_members" class="btn btn-primary" data-usertype="member" data-url="/groups/add_members">Add Member(s)</button> + <button type="button" id="add_members" class="btn btn-primary" data-usertype="member" data-url="{{ GROUP_URL }}">Add Member(s)</button> </div> {% endif %} {% endif %} @@ -219,6 +241,7 @@ $("#add_admins, #add_members").on("click", function() { url = $(this).data("url"); + console.log(url) return submit_special(url) }); @@ -230,7 +253,7 @@ new_name = $('input[name=new_group_name]').val() $.ajax({ type: "POST", - url: "/groups/change_name", + url: "{{ GROUP_URL }} ", data: { group_id: $('input[name=group_id]').val(), new_name: new_name diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html index ab8b644f..6e922f24 100644 --- a/wqflask/wqflask/templates/base.html +++ b/wqflask/wqflask/templates/base.html @@ -87,7 +87,7 @@ <li><a href="https://systems-genetics.org/">Systems Genetics PheWAS</a></li> <li><a href="http://ucscbrowser.genenetwork.org/">Genome Browser</a></li> <li><a href="http://power.genenetwork.org">BXD Power Calculator</a></li> - <li><a href="url_for('jupyter_notebooks.launcher')">Jupyter Notebook Launcher</a></li> + <li><a href="{{url_for('jupyter_notebooks.launcher')}}">Jupyter Notebook Launcher</a></li> <li><a href="http://datafiles.genenetwork.org">Interplanetary File System</a></li> </ul> </li> diff --git a/wqflask/wqflask/templates/jupyter_notebooks.html b/wqflask/wqflask/templates/jupyter_notebooks.html index 4dce0f27..afc95a15 100644 --- a/wqflask/wqflask/templates/jupyter_notebooks.html +++ b/wqflask/wqflask/templates/jupyter_notebooks.html @@ -4,6 +4,10 @@ Jupyter Notebooks {%endblock%} +{%block css%} +<link rel="stylesheet" type="text/css" href="/static/new/css/jupyter_notebooks.css" /> +{%endblock%} + {%block content%} <div class="container"> diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html index 95842316..dade6ba5 100644 --- a/wqflask/wqflask/templates/search_result_page.html +++ b/wqflask/wqflask/templates/search_result_page.html @@ -176,7 +176,7 @@ return params; }; - {% if results|count > 0 %} + {% if results|count > 0 and not too_many_results %} var tableId = "trait_table"; var width_change = 0; //ZS: For storing the change in width so overall table width can be adjusted by that amount diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index 3e59a3ee..6b125221 100644 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -234,7 +234,7 @@ {% endif %} {% endif %} <button type="button" id="view_in_gn1" class="btn btn-primary" title="View Trait in GN1" onclick="window.open('http://gn1.genenetwork.org/webqtl/main.py?cmd=show&db={{ this_trait.dataset.name }}&probeset={{ this_trait.name }}', '_blank')">Go to GN1</button> - {% if admin_status.get('metadata', DataRole.VIEW) > DataRole.VIEW %} + {% if admin_status != None and admin_status.get('metadata', DataRole.VIEW) > DataRole.VIEW %} {% if this_trait.dataset.type == 'Publish' %} <button type="button" id="edit_resource" class="btn btn-success" title="Edit Resource" onclick="window.open('/datasets/{{ this_trait.dataset.id }}/traits/{{ this_trait.name }}?resource-id={{ resource_id }}', '_blank')">Edit</button> {% endif %} |