diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/views.py | 22 |
1 files changed, 8 insertions, 14 deletions
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 44560427..a462b31a 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -39,8 +39,8 @@ from gn3.db.phenotypes import Probeset from gn3.db.phenotypes import Publication from gn3.db.phenotypes import PublishXRef from gn3.db.phenotypes import probeset_mapping -from gn3.db.traits import get_trait_csv_sample_data -from gn3.db.traits import update_sample_data +# from gn3.db.traits import get_trait_csv_sample_data +# from gn3.db.traits import update_sample_data from flask import current_app @@ -77,6 +77,7 @@ from wqflask.correlation_matrix import show_corr_matrix from wqflask.correlation import corr_scatter_plot # from wqflask.wgcna import wgcna_analysis # from wqflask.ctl import ctl_analysis +from wqflask.wgcna.gn3_wgcna import run_wgcna from wqflask.snp_browser import snp_browser from wqflask.search_results import SearchResultPage from wqflask.export_traits import export_search_results_csv @@ -365,18 +366,11 @@ def wcgna_setup(): return render_template("wgcna_setup.html", **request.form) -# @app.route("/wgcna_results", methods=('POST',)) -# def wcgna_results(): -# logger.info("In wgcna, request.form is:", request.form) -# logger.info(request.url) -# # Start R, load the package and pointers and create the analysis -# wgcna = wgcna_analysis.WGCNA() -# # Start the analysis, a wgcnaA object should be a separate long running thread -# wgcnaA = wgcna.run_analysis(request.form) -# # After the analysis is finished store the result -# result = wgcna.process_results(wgcnaA) -# # Display them using the template -# return render_template("wgcna_results.html", **result) +@app.route("/wgcna_results", methods=('POST',)) +def wcgna_results(): + """call the gn3 api to get wgcna response data""" + results = run_wgcna(dict(request.form)) + return render_template("test_wgcna_results.html", **results) @app.route("/ctl_setup", methods=('POST',)) |