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-rw-r--r--wqflask/cfg/default_settings.py4
-rw-r--r--wqflask/cfg/zach_settings.py1
-rw-r--r--wqflask/maintenance/gen_select_dataset.py33
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure2904
-rwxr-xr-xwqflask/wqflask/static/new/javascript/dataset_select_items.js773
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee10
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_select_menu.js12
7 files changed, 46 insertions, 3691 deletions
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
index 30ad51d1..1811ccfd 100644
--- a/wqflask/cfg/default_settings.py
+++ b/wqflask/cfg/default_settings.py
@@ -1 +1,5 @@
LOGFILE = """/tmp/flask_gn_log"""
+
+#This is needed because Flask turns key errors into a
+#400 bad request response with no exception/log
+TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/cfg/zach_settings.py b/wqflask/cfg/zach_settings.py
index 30ad51d1..ed97f222 100644
--- a/wqflask/cfg/zach_settings.py
+++ b/wqflask/cfg/zach_settings.py
@@ -1 +1,2 @@
LOGFILE = """/tmp/flask_gn_log"""
+TRAP_BAD_REQUEST_ERRORS = True
diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py
index 9224b884..4c544192 100644
--- a/wqflask/maintenance/gen_select_dataset.py
+++ b/wqflask/maintenance/gen_select_dataset.py
@@ -1,3 +1,10 @@
+"""Script that generates the data for the main dropdown menus on the home page
+
+Writes out data as /static/new/javascript/dataset_menu_structure.json
+It needs to be run manually when database has been changed.
+
+"""
+
# Copyright (C) University of Tennessee Health Science Center, Memphis, TN.
#
# This program is free software: you can redistribute it and/or modify it
@@ -13,16 +20,13 @@
# This program is available from Source Forge: at GeneNetwork Project
# (sourceforge.net/projects/genenetwork/).
#
-# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010)
-# at rwilliams@uthsc.edu and xzhou15@uthsc.edu
+# Contact Drs. Robert W. Williams
+# at rwilliams@uthsc.edu
#
#
#
# This module is used by GeneNetwork project (www.genenetwork.org)
-# This script is to generate the data for the main menus on the home page
-# It needs to be run manually when database has been changed .
-
from __future__ import print_function, division
import sys
@@ -39,7 +43,8 @@ from base import webqtlConfig
# build MySql database connection
-Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,host=webqtlConfig.MYSQL_SERVER,
+Con = MySQLdb.Connect(db=webqtlConfig.DB_NAME,
+ host=webqtlConfig.MYSQL_SERVER,
user=webqtlConfig.DB_USER,
passwd=webqtlConfig.DB_PASSWD)
Cursor = Con.cursor()
@@ -82,6 +87,12 @@ def get_types(groups):
def build_types(species, group):
+ """Fetches tissues
+
+ Gets the tissues with data for this species/group
+ (all types except phenotype/genotype are tissues)
+
+ """
Cursor.execute("""select distinct Tissue.Name, concat(Tissue.Name, ' mRNA')
from ProbeFreeze, ProbeSetFreeze, InbredSet, Tissue, Species
where Species.Name = %s and Species.Id = InbredSet.SpeciesId and
@@ -101,12 +112,13 @@ def get_datasets(types):
datasets[species] = {}
for group, type_list in group_dict.iteritems():
datasets[species][group] = {}
- for type_name, type_full_name in type_list:
+ for type_name, _type_full_name in type_list:
datasets[species][group][type_name] = build_datasets(species, group, type_name)
return datasets
def build_datasets(species, group, type_name):
+ """Gets dataset names from database"""
dataset_text = dataset_value = None
if type_name == "Phenotypes":
dataset_value = "%sPublish" % group
@@ -135,6 +147,7 @@ def build_datasets(species, group, type_name):
def main():
+ """Generates and outputs (as json file) the data for the main dropdown menus on the home page"""
species = get_species()
groups = get_groups(species)
types = get_types(groups)
@@ -154,14 +167,16 @@ def main():
datasets=datasets,
)
- output_file = """../wqflask/static/new/javascript/dataset_menu_structure"""
+ output_file = """../wqflask/static/new/javascript/dataset_menu_structure.json"""
with open(output_file, 'w') as fh:
json.dump(data, fh, indent=" ", sort_keys=True)
print("\nWrote file to:", output_file)
-def test_it():
+
+def _test_it():
+ """Used for internal testing only"""
types = build_types("Mouse", "BXD")
print("build_types:", pf(types))
datasets = build_datasets("Mouse", "BXD", "Hippocampus")
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure b/wqflask/wqflask/static/new/javascript/dataset_menu_structure
deleted file mode 100644
index 1b7e4090..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure
+++ /dev/null
@@ -1,2904 +0,0 @@
-{
- "datasets": {
- "All Species": {
- "All Groups": {
- "Phenotypes": [
- [
- "All Phenotypes",
- "All Phenotypes"
- ]
- ]
- }
- },
- "arabidopsis": {
- "BayXSha": {
- "Genotypes": [
- [
- "BayXShaGeno",
- "BayXSha Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BayXShaPublish",
- "BayXSha Published Phenotypes"
- ]
- ]
- },
- "ColXBur": {
- "Genotypes": [
- [
- "ColXBurGeno",
- "ColXBur Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "ColXBurPublish",
- "ColXBur Published Phenotypes"
- ]
- ]
- },
- "ColXCvi": {
- "Genotypes": [
- [
- "ColXCviGeno",
- "ColXCvi Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "ColXCviPublish",
- "ColXCvi Published Phenotypes"
- ]
- ]
- }
- },
- "barley": {
- "QSM": {
- "Genotypes": [
- [
- "QSMGeno",
- "QSM Genotypes"
- ]
- ],
- "Leaf": [
- [
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
- "B1LI0809M5",
- "Barley1 Leaf INOC TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809M5",
- "Barley1 Leaf MOCK TTKS (Aug09) MAS5"
- ],
- [
- "B1MI0809R",
- "Barley1 Leaf MOCK TTKS (Aug09) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "QSMPublish",
- "QSM Published Phenotypes"
- ]
- ]
- },
- "SXM": {
- "Embryo": [
- [
- "B139_K_1206_R",
- "Barley1 Embryo gcRMA SCRI (Dec06)"
- ],
- [
- "B139_K_1206_M",
- "Barley1 Embryo MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B150_K_0406_R",
- "Barley1 Embryo0 gcRMA SCRI (Apr06)"
- ]
- ],
- "Genotypes": [
- [
- "SXMGeno",
- "SXM Genotypes"
- ]
- ],
- "Leaf": [
- [
- "B30_K_1206_M",
- "Barley1 Leaf MAS 5.0 SCRI (Dec06)"
- ],
- [
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
- ],
- [
- "B30_K_1206_R",
- "Barley1 Leaf gcRMA SCRI (Dec06)"
- ]
- ],
- "Phenotypes": [
- [
- "SXMPublish",
- "SXM Published Phenotypes"
- ]
- ]
- }
- },
- "drosophila": {
- "DGRP": {
- "Genotypes": [
- [
- "DGRPGeno",
- "DGRP Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "DGRPPublish",
- "DGRP Published Phenotypes"
- ]
- ],
- "Whole Body": [
- [
- "NCSU_DrosWB_LC_RMA_0111",
- "NCSU Drosophila Whole Body (Jan11) RMA"
- ]
- ]
- },
- "Oregon-R_x_2b3": {
- "Genotypes": [
- [
- "Oregon-R_x_2b3Geno",
- "Oregon-R_x_2b3 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "Oregon-R_x_2b3Publish",
- "Oregon-R_x_2b3 Published Phenotypes"
- ]
- ],
- "Whole Body": [
- [
- "UAB_DrosWB_LC_RMA_1009",
- "UAB Whole body D.m. mRNA control (Oct09) RMA"
- ],
- [
- "UAB_DrosWB_LE_RMA_1009",
- "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA"
- ]
- ]
- }
- },
- "human": {
- "AD-cases-controls": {
- "Brain": [
- [
- "GSE5281_F_RMA_N_0709",
- "GSE5281 Human Brain Normal Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA_Alzh_0709",
- "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_F_RMA0709",
- "GSE5281 Human Brain Full Liang (Jul09) RMA"
- ],
- [
- "GSE5281_RMA0709",
- "GSE5281 Human Brain Best 102 Liang (Jul09) RMA"
- ]
- ],
- "Genotypes": [
- [
- "AD-cases-controlsGeno",
- "AD-cases-controls Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AD-cases-controlsPublish",
- "AD-cases-controls Published Phenotypes"
- ]
- ]
- },
- "AD-cases-controls-Myers": {
- "Brain": [
- [
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_N_RI_0409",
- "GSE15222 Human Brain Normal Myers (Apr09) RankInv"
- ],
- [
- "GSE15222_F_RI_0409",
- "GSE15222 Human Brain Myers (Apr09) RankInv"
- ]
- ],
- "Genotypes": [
- [
- "AD-cases-controls-MyersGeno",
- "AD-cases-controls-Myers Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AD-cases-controls-MyersPublish",
- "AD-cases-controls-Myers Published Phenotypes"
- ]
- ]
- },
- "CANDLE": {
- "Genotypes": [
- [
- "CANDLEGeno",
- "CANDLE Genotypes"
- ]
- ],
- "Newborn Cord Blood": [
- [
- "CANDLE_NB_0711",
- "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **"
- ]
- ],
- "Phenotypes": [
- [
- "CANDLEPublish",
- "CANDLE Published Phenotypes"
- ]
- ]
- },
- "CEPH-2004": {
- "Genotypes": [
- [
- "CEPH-2004Geno",
- "CEPH-2004 Genotypes"
- ]
- ],
- "Lymphoblast B-cell": [
- [
- "UT_CEPH_RankInv0909",
- "UTHSC CEPH B-cells Illumina (Sep09) RankInv"
- ],
- [
- "Human_1008",
- "Monks CEPH B-cells Agilent (Dec04) Log10Ratio"
- ]
- ],
- "Phenotypes": [
- [
- "CEPH-2004Publish",
- "CEPH-2004 Published Phenotypes"
- ]
- ]
- },
- "HB": {
- "Cerebellum": [
- [
- "HBTRC-MLC_0611",
- "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_N_0611",
- "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_AD_0611",
- "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLC_HD_0611",
- "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "HBGeno",
- "HB Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "HBPublish",
- "HB Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "HBTRC-MLPFC_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_N_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_AD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLPFC_HD_0611",
- "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "HBTRC-MLVC_0611",
- "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_N_0611",
- "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_AD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio"
- ],
- [
- "HBTRC-MLVC_HD_0611",
- "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio"
- ]
- ]
- },
- "HLC": {
- "Genotypes": [
- [
- "HLCGeno",
- "HLC Genotypes"
- ]
- ],
- "Liver": [
- [
- "HLC_0311",
- "GSE9588 Human Liver Normal (Mar11) Both Sexes"
- ],
- [
- "HLCM_0311",
- "GSE9588 Human Liver Normal (Mar11) Males"
- ],
- [
- "HLCF_0311",
- "GSE9588 Human Liver Normal (Mar11) Females"
- ]
- ],
- "Phenotypes": [
- [
- "HLCPublish",
- "HLC Published Phenotypes"
- ]
- ]
- },
- "HSB": {
- "Amygdala": [
- [
- "KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Caudal Ganglionic Eminence": [
- [
- "KIN_YSM_CGE_0711",
- "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Cerebellar Cortex": [
- [
- "KIN_YSM_CBC_0711",
- "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Diencephalon": [
- [
- "KIN_YSM_DIE_0711",
- "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsal Thalamus": [
- [
- "KIN_YSM_DTH_0711",
- "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsolateral Prefrontal Cortex": [
- [
- "KIN_YSM_DFC_0711",
- "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Frontal Cerebral Wall": [
- [
- "KIN_YSM_FC_0711",
- "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Genotypes": [
- [
- "HSBGeno",
- "HSB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Inferior Temporal Cortex": [
- [
- "KIN_YSM_ITC_0711",
- "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Lateral Ganglionic Eminence": [
- [
- "KIN_YSM_LGE_0711",
- "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Ganglionic Eminence": [
- [
- "KIN_YSM_MGE_0711",
- "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Prefrontal Cortex": [
- [
- "KIN_YSM_MFC_0711",
- "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Mediodorsal Nucleus of Thalamus": [
- [
- "KIN_YSM_MD_0711",
- "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Occipital Cerebral Wall": [
- [
- "KIN_YSM_OC_0711",
- "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Orbital Prefrontal Cortex": [
- [
- "KIN_YSM_OFC_0711",
- "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Parietal Cerebral Wall": [
- [
- "KIN_YSM_PC_0711",
- "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Phenotypes": [
- [
- "HSBPublish",
- "HSB Published Phenotypes"
- ]
- ],
- "Posterior Inferior Parietal Cortex": [
- [
- "KIN_YSM_IPC_0711",
- "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Posterior Superior Temporal Cortex": [
- [
- "KIN_YSM_STC_0711",
- "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Auditory (A1) Cortex": [
- [
- "KIN_YSM_A1C_0711",
- "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Motor (M1) Cortex": [
- [
- "KIN_YSM_M1C_0711",
- "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Somatosensory (S1) Cortex": [
- [
- "KIN_YSM_S1C_0711",
- "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Primary Visual Cortex": [
- [
- "KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Striatum": [
- [
- "KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Temporal Cerebral Wall": [
- [
- "KIN_YSM_TC_0711",
- "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Upper (Rostral) Rhombic Lip": [
- [
- "KIN_YSM_URL_0711",
- "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventral Forebrain": [
- [
- "KIN_YSM_VF_0711",
- "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventrolateral Prefrontal Cortex": [
- [
- "KIN_YSM_VFC_0711",
- "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ]
- }
- },
- "macaque monkey": {
- "Macaca-fasicularis": {
- "Amygdala": [
- [
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
- ]
- ],
- "Brain": [
- [
- "INIA_MacFas_brain_RMA_0110",
- "INIA Macaca fasicularis Brain (Jan10) RMA **"
- ]
- ],
- "Genotypes": [
- [
- "Macaca-fasicularisGeno",
- "Macaca-fasicularis Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
- ]
- ],
- "Phenotypes": [
- [
- "Macaca-fasicularisPublish",
- "Macaca-fasicularis Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
- ]
- ]
- }
- },
- "mouse": {
- "AKXD": {
- "Genotypes": [
- [
- "AKXDGeno",
- "AKXD Genotypes"
- ]
- ],
- "Mammary Tumors": [
- [
- "NCI_Agil_Mam_Tum_RMA_0409",
- "NCI Mammary LMT miRNA v2 (Apr09) RMA"
- ],
- [
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ],
- [
- "MA_M_0704_M",
- "NCI Mammary mRNA M430 (July04) MAS5"
- ]
- ],
- "Phenotypes": [
- [
- "AKXDPublish",
- "AKXD Published Phenotypes"
- ]
- ]
- },
- "AXBXA": {
- "Eye": [
- [
- "Eye_AXBXA_1008_RankInv",
- "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta"
- ]
- ],
- "Genotypes": [
- [
- "AXBXAGeno",
- "AXBXA Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "AXBXAPublish",
- "AXBXA Published Phenotypes"
- ]
- ]
- },
- "B6BTBRF2": {
- "Genotypes": [
- [
- "B6BTBRF2Geno",
- "B6BTBRF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
- "LVF2_M_0704_M",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
- ]
- ],
- "Phenotypes": [
- [
- "B6BTBRF2Publish",
- "B6BTBRF2 Published Phenotypes"
- ]
- ]
- },
- "B6D2F2": {
- "Brain": [
- [
- "BRF2_M_0805_R",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA"
- ],
- [
- "BRF2_M_0805_M",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5"
- ],
- [
- "BRF2_M_0805_P",
- "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN"
- ],
- [
- "BRF2_M_0304_P",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
- ],
- [
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
- "BRF2_M_0304_M",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
- ]
- ],
- "Genotypes": [
- [
- "B6D2F2Geno",
- "B6D2F2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "B6D2F2Publish",
- "B6D2F2 Published Phenotypes"
- ]
- ]
- },
- "BDF2-1999": {
- "Genotypes": [
- [
- "BDF2-1999Geno",
- "BDF2-1999 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BDF2_LIVER_1999",
- "UCLA BDF2 Liver (1999) mlratio"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-1999Publish",
- "BDF2-1999 Published Phenotypes"
- ]
- ]
- },
- "BDF2-2005": {
- "Genotypes": [
- [
- "BDF2-2005Geno",
- "BDF2-2005 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BDF2-2005Publish",
- "BDF2-2005 Published Phenotypes"
- ]
- ],
- "Striatum": [
- [
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
- "SA_M2_0905_M",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
- ],
- [
- "SA_M2_0905_P",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
- ]
- ]
- },
- "BHF2": {
- "Adipose": [
- [
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
- "UCLA_BHF2_ADIPOSE_FEMALE",
- "UCLA BHF2 Adipose Female mlratio"
- ],
- [
- "UCLA_BHF2_ADIPOSE_0605",
- "UCLA BHF2 Adipose (June05) mlratio"
- ]
- ],
- "Brain": [
- [
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_FEMALE",
- "UCLA BHF2 Brain Female mlratio"
- ],
- [
- "UCLA_BHF2_BRAIN_0605",
- "UCLA BHF2 Brain (June05) mlratio"
- ]
- ],
- "Genotypes": [
- [
- "BHF2Geno",
- "BHF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
- "UCLA_BHF2_LIVER_FEMALE",
- "UCLA BHF2 Liver Female mlratio"
- ],
- [
- "UCLA_BHF2_LIVER_0605",
- "UCLA BHF2 Liver (June05) mlratio"
- ]
- ],
- "Muscle": [
- [
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_FEMALE",
- "UCLA BHF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_BHF2_MUSCLE_0605",
- "UCLA BHF2 Muscle (June05) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHF2Publish",
- "BHF2 Published Phenotypes"
- ]
- ]
- },
- "BHHBF2": {
- "Adipose": [
- [
- "UCLA_BHHBF2_ADIPOSE_MALE",
- "UCLA BHHBF2 Adipose Male Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_FEMALE",
- "UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
- ]
- ],
- "Brain": [
- [
- "UCLA_BHHBF2_BRAIN_MALE",
- "UCLA BHHBF2 Brain Male Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_FEMALE",
- "UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
- ]
- ],
- "Genotypes": [
- [
- "BHHBF2Geno",
- "BHHBF2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_BHHBF2_LIVER_MALE",
- "UCLA BHHBF2 Liver Male Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_FEMALE",
- "UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
- ]
- ],
- "Muscle": [
- [
- "UCLA_BHHBF2_MUSCLE_MALE",
- "UCLA BHHBF2 Muscle Male Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_FEMALE",
- "UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "BHHBF2Publish",
- "BHHBF2 Published Phenotypes"
- ]
- ]
- },
- "BXD": {
- "Amygdala": [
- [
- "INIA_AmgCoh_0311",
- "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA"
- ],
- [
- "INIA_Amg_BLA_RMA_M_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male"
- ],
- [
- "INIA_Amg_BLA_RMA_F_1110",
- "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
- ]
- ],
- "Brain": [
- [
- "BR_M2_1106_R",
- "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA"
- ],
- [
- "BR_U_1105_P",
- "UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
- ],
- [
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
- "BR_U_0805_R",
- "UTHSC Brain mRNA U74Av2 (Aug05) RMA"
- ],
- [
- "BR_U_0805_P",
- "UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
- ],
- [
- "CB_M_0204_P",
- "INIA Brain mRNA M430 (Feb04) PDNN"
- ]
- ],
- "Cartilage": [
- [
- "UCLA_BXDBXH_CARTILAGE_V2",
- "UCLA BXD and BXH Cartilage v2"
- ],
- [
- "UCLA_BXDBXH_CARTILAGE",
- "UCLA BXD and BXH Cartilage"
- ],
- [
- "UCLA_BXD_CARTILAGE",
- "UCLA BXD Cartilage"
- ]
- ],
- "Cerebellum": [
- [
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
- "CB_M_1004_R",
- "SJUT Cerebellum mRNA M430 (Oct04) RMA"
- ],
- [
- "CB_M_1004_P",
- "SJUT Cerebellum mRNA M430 (Oct04) PDNN"
- ],
- [
- "CB_M_1003_M",
- "SJUT Cerebellum mRNA M430 (Oct03) MAS5"
- ]
- ],
- "Eye": [
- [
- "Eye_M2_0908_R",
- "Eye M430v2 (Sep08) RMA"
- ],
- [
- "Eye_M2_0908_R_NB",
- "Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_ND",
- "Eye M430v2 WT Gpnmb (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_WT",
- "Eye M430v2 WT Tyrp1 (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
- "Eye_M2_0908_R_MT",
- "Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
- ],
- [
- "BXD_GLA_0911",
- "BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **"
- ]
- ],
- "Genotypes": [
- [
- "BXDGeno",
- "BXD Genotypes"
- ]
- ],
- "Hematopoietic Cells": [
- [
- "UMCG_0907_HemaStem_ori",
- "UMCG Stem Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_HemaStem",
- "UMCG Stem Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Pro_ori",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Pro",
- "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Eryth_ori",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Eryth",
- "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "UMCG_0907_Myeloid_ori",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) original"
- ],
- [
- "UMCG_0907_Myeloid",
- "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed"
- ],
- [
- "HC_U_0304_R",
- "GNF Stem Cells U74Av2 (Mar04) RMA"
- ]
- ],
- "Hippocampus": [
- [
- "HC_M2_0606_P",
- "Hippocampus Consortium M430v2 (Jun06) PDNN"
- ],
- [
- "HC_M2_0606_M",
- "Hippocampus Consortium M430v2 (Jun06) MAS5"
- ],
- [
- "HC_M2_0606_R",
- "Hippocampus Consortium M430v2 (Jun06) RMA"
- ],
- [
- "UMUTAffyExon_0209_RMA",
- "UMUTAffy Hippocampus Exon (Feb09) RMA"
- ],
- [
- "UT_ILM_BXD_hipp_NON_0909",
- "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOS_0909",
- "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_NOE_0909",
- "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSS_0909",
- "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv"
- ],
- [
- "UT_ILM_BXD_hipp_RSE_0909",
- "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
- ]
- ],
- "Hypothalamus": [
- [
- "INIA_Hyp_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)"
- ],
- [
- "INIA_Hyp_M_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male"
- ],
- [
- "INIA_Hyp_F_RMA_1110",
- "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
- ]
- ],
- "Kidney": [
- [
- "MA_M2F_0706_R",
- "Mouse kidney M430v2 Female (Aug06) RMA"
- ],
- [
- "MA_M2M_0706_R",
- "Mouse kidney M430v2 Male (Aug06) RMA"
- ],
- [
- "MA_M2_0806_R",
- "Mouse kidney M430v2 Sex Balanced (Aug06) RMA"
- ],
- [
- "MA_M2_0806_P",
- "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
- ],
- [
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ],
- [
- "MA_M2_0706_R",
- "Mouse Kidney M430v2 (Jul06) RMA"
- ]
- ],
- "Leucocytes": [
- [
- "Illum_BXD_PBL_1108",
- "UWA Illumina PBL (Nov08) RSN **"
- ]
- ],
- "Liver": [
- [
- "GSE16780_UCLA_ML0911",
- "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
- ],
- [
- "GenEx_BXD_liverSal_RMA_F_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_M_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverSal_RMA_0211",
- "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_F_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_M_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **"
- ],
- [
- "GenEx_BXD_liverEt_RMA_0211",
- "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **"
- ],
- [
- "SUH_Liv_RMA_0611",
- "SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **"
- ]
- ],
- "Lung": [
- [
- "HZI_0408_R",
- "HZI Lung M430v2 (Apr08) RMA"
- ],
- [
- "HZI_0408_M",
- "HZI Lung M430v2 (Apr08) MAS5"
- ]
- ],
- "Midbrain": [
- [
- "VUBXDMouseMidBrainQ0212",
- "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
- ]
- ],
- "Muscle": [
- [
- "EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleHFDRMA1211",
- "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ],
- [
- "EPFLMouseMuscleCDRMA1211",
- "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
- ]
- ],
- "Neocortex": [
- [
- "DevNeocortex_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "HQFNeoc_1210v2_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv"
- ],
- [
- "HQFNeoc_1210_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv"
- ],
- [
- "HQFNeoc_0208_RankInv",
- "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
- ],
- [
- "DevNeocortex_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevNeocortex_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "Nucleus Accumbens": [
- [
- "VCUSalo_1007_R",
- "VCU BXD NA Sal M430 2.0 (Oct07) RMA"
- ],
- [
- "VCUEtOH_1007_R",
- "VCU BXD NA EtOH M430 2.0 (Oct07) RMA **"
- ],
- [
- "VCUSal_1007_R",
- "VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **"
- ]
- ],
- "Phenotypes": [
- [
- "BXDPublish",
- "BXD Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1206_R",
- "VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
- ],
- [
- "VCUSal_1006_R",
- "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
- ],
- [
- "VCU_PF_Air_0111_R",
- "VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_Et_0111_R",
- "VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **"
- ],
- [
- "VCU_PF_AvE_0111_Ss",
- "VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **"
- ]
- ],
- "Retina": [
- [
- "Illum_Retina_BXD_RankInv0410",
- "HEI Retina Illumina V6.2 (April 2010) RankInv"
- ],
- [
- "B6D2ONCILM_0412",
- "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
- ],
- [
- "ONCRetILM6_0412",
- "ONC Retina Illumina V6.2 (Apr12) RankInv **"
- ],
- [
- "HEIONCvsCRetILM6_0911",
- "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "G2HEIONCRetILM6_0911",
- "G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "HEIONCRetILM6_0911",
- "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "ILM_Retina_BXD_F_RankInv1210",
- "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_M_RankInv1210",
- "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_FM_RankInv1210",
- "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "G2NEI_ILM_Retina_BXD_RI0410",
- "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
- ]
- ],
- "Spleen": [
- [
- "UTHSC_SPL_RMA_1210",
- "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
- ],
- [
- "UTHSC_SPL_RMA_1010",
- "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
- ],
- [
- "IoP_SPL_RMA_0509",
- "IoP Affy MOE 430v2 Spleen (May09) RMA"
- ],
- [
- "Illum_BXD_Spl_1108",
- "UWA Illumina Spleen (Nov08) RSN **"
- ],
- [
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
- ]
- ],
- "Striatum": [
- [
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
- ],
- [
- "UTHSC_Striatum_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
- ],
- [
- "UTHSC_Str_RankInv_1210",
- "HQF BXD Striatum ILM6.1 (Dec10) RankInv"
- ],
- [
- "UTHSC_1107_RankInv",
- "HQF BXD Striatum ILM6.1 (Nov07) RankInv"
- ],
- [
- "SA_M2_0405_MC",
- "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean"
- ],
- [
- "SA_M2_0405_RC",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Clean"
- ],
- [
- "SA_M2_0405_PC",
- "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean"
- ],
- [
- "SA_M2_0405_SS",
- "HBP Rosen Striatum M430V2 (Apr05) SScore"
- ],
- [
- "SA_M2_0405_RR",
- "HBP Rosen Striatum M430V2 (Apr05) RMA Orig"
- ],
- [
- "Striatum_Exon_0209",
- "HQF Striatum Exon (Feb09) RMA"
- ],
- [
- "DevStriatum_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **"
- ],
- [
- "DevStriatum_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **"
- ]
- ],
- "T Cell (helper)": [
- [
- "RTHC_0211_R",
- "HZI Thelp M430v2 (Feb11) RMA"
- ]
- ],
- "T Cell (regulatory)": [
- [
- "RTC_1106_R",
- "HZI Treg M430v2 (Feb11) RMA"
- ]
- ],
- "Thymus": [
- [
- "Illum_BXD_Thy_1108",
- "UWA Illumina Thymus (Nov08) RSN **"
- ]
- ],
- "Ventral Tegmental Area": [
- [
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
- ],
- [
- "VCUSal_0609_R",
- "VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
- ],
- [
- "VCUEtvsSal_0609_R",
- "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
- ]
- ]
- },
- "BXH": {
- "Cartilage": [
- [
- "UCLA_BXHBXD_CARTILAGE_V2",
- "UCLA BXH and BXD Cartilage v2"
- ],
- [
- "UCLA_BXHBXD_CARTILAGE",
- "UCLA BXH and BXD Cartilage"
- ],
- [
- "UCLA_BXH_CARTILAGE",
- "UCLA BXH Cartilage"
- ]
- ],
- "Genotypes": [
- [
- "BXHGeno",
- "BXH Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "BXHPublish",
- "BXH Published Phenotypes"
- ]
- ]
- },
- "CTB6F2": {
- "Adipose": [
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
- "UCLA CTB6B6CTF2 Adipose Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
- ]
- ],
- "Brain": [
- [
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_FEMALE",
- "UCLA CTB6B6CTF2 Brain Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
- ]
- ],
- "Genotypes": [
- [
- "CTB6F2Geno",
- "CTB6F2 Genotypes"
- ]
- ],
- "Liver": [
- [
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_FEMALE",
- "UCLA CTB6B6CTF2 Liver Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
- ]
- ],
- "Muscle": [
- [
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
- "UCLA CTB6B6CTF2 Muscle Female mlratio **"
- ],
- [
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
- ]
- ],
- "Phenotypes": [
- [
- "CTB6F2Publish",
- "CTB6F2 Published Phenotypes"
- ]
- ]
- },
- "CXB": {
- "Genotypes": [
- [
- "CXBGeno",
- "CXB Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
- "HC_M2CB_1205_P",
- "Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
- ]
- ],
- "Phenotypes": [
- [
- "CXBPublish",
- "CXB Published Phenotypes"
- ]
- ],
- "Spleen": [
- [
- "STSPL_1107_R",
- "Stuart Spleen M430v2 (Nov07) RMA"
- ]
- ]
- },
- "HS": {
- "Genotypes": [
- [
- "HSGeno",
- "HS Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "OXUKHS_ILMHipp_RI0510",
- "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv"
- ]
- ],
- "Liver": [
- [
- "OXUKHS_ILMLiver_RI0510",
- "OX UK HS ILM6v1.1 Liver (May 2010) RankInv"
- ]
- ],
- "Lung": [
- [
- "OXUKHS_ILMLung_RI0510",
- "OX UK HS ILM6v1.1 Lung (May 2010) RankInv"
- ]
- ],
- "Phenotypes": [
- [
- "HSPublish",
- "HS Published Phenotypes"
- ]
- ]
- },
- "HS-CC": {
- "Genotypes": [
- [
- "HS-CCGeno",
- "HS-CC Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "HS-CCPublish",
- "HS-CC Published Phenotypes"
- ]
- ],
- "Striatum": [
- [
- "OHSU_HS-CC_ILMStr_0211",
- "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv"
- ]
- ]
- },
- "LXS": {
- "Genotypes": [
- [
- "LXSGeno",
- "LXS Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "Illum_LXS_Hipp_loess0807",
- "Hippocampus Illumina (Aug07) LOESS"
- ],
- [
- "Illum_LXS_Hipp_loess_nb0807",
- "Hippocampus Illumina (Aug07) LOESS_NB"
- ],
- [
- "Illum_LXS_Hipp_quant0807",
- "Hippocampus Illumina (Aug07) QUANT"
- ],
- [
- "Illum_LXS_Hipp_quant_nb0807",
- "Hippocampus Illumina (Aug07) QUANT_NB"
- ],
- [
- "Illum_LXS_Hipp_rsn0807",
- "Hippocampus Illumina (Aug07) RSN"
- ],
- [
- "Illum_LXS_Hipp_rsn_nb0807",
- "Hippocampus Illumina (Aug07) RSN_NB"
- ],
- [
- "Hipp_Illumina_RankInv_0507",
- "Hippocampus Illumina (May07) RankInv"
- ],
- [
- "Illum_LXS_Hipp_NOS_1008",
- "Hippocampus Illumina NOS (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSE_1008",
- "Hippocampus Illumina RSE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_NOE_1008",
- "Hippocampus Illumina NOE (Oct08) RankInv beta"
- ],
- [
- "Illum_LXS_Hipp_RSS_1008",
- "Hippocampus Illumina RSS (Oct08) RankInv beta"
- ]
- ],
- "Phenotypes": [
- [
- "LXSPublish",
- "LXS Published Phenotypes"
- ]
- ],
- "Prefrontal Cortex": [
- [
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
- "VCUSal_0806_R",
- "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
- ],
- [
- "VCUEt_vs_Sal_0806_R",
- "VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
- ]
- ]
- },
- "MDP": {
- "Genotypes": [
- [
- "MDPGeno",
- "MDP Genotypes"
- ]
- ],
- "Hippocampus": [
- [
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
- "HC_M2_0606_MDP",
- "Hippocampus Consortium M430v2 (Jun06) RMA MDP"
- ]
- ],
- "Liver": [
- [
- "JAX_CSB_L_0711",
- "JAX Liver Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_HF_0711",
- "JAX Liver HF Affy M430 2.0 (Jul11) MDP"
- ],
- [
- "JAX_CSB_L_6C_0711",
- "JAX Liver 6C Affy M430 2.0 (Jul11) MDP"
- ]
- ],
- "Phenotypes": [
- [
- "MDPPublish",
- "Mouse Phenome Database"
- ]
- ]
- },
- "NZBXFVB-N2": {
- "Genotypes": [
- [
- "NZBXFVB-N2Geno",
- "NZBXFVB-N2 Genotypes"
- ]
- ],
- "Mammary Tumors": [
- [
- "NCI_Mam_Tum_RMA_0409",
- "NCI Mammary M430v2 (Apr09) RMA"
- ]
- ],
- "Phenotypes": [
- [
- "NZBXFVB-N2Publish",
- "NZBXFVB-N2 Published Phenotypes"
- ]
- ]
- }
- },
- "rat": {
- "HXBBXH": {
- "Adrenal Gland": [
- [
- "HXB_Adrenal_1208",
- "MDC/CAS/UCL Adrenal 230A (Dec08) RMA"
- ]
- ],
- "Genotypes": [
- [
- "HXBBXHGeno",
- "HXBBXH Genotypes"
- ]
- ],
- "Heart": [
- [
- "HXB_Heart_1208",
- "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA"
- ]
- ],
- "Hippocampus": [
- [
- "UT_HippRatEx_RMA_0709",
- "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA"
- ]
- ],
- "Kidney": [
- [
- "KI_2A_0405_M",
- "MDC/CAS/ICL Kidney 230A (Apr05) MAS5"
- ],
- [
- "KI_2A_0405_Rz",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8"
- ],
- [
- "KI_2A_0405_R",
- "MDC/CAS/ICL Kidney 230A (Apr05) RMA"
- ]
- ],
- "Liver": [
- [
- "HXB_Liver_1208",
- "MDC/CAS/UCL Liver 230v2 (Dec08) RMA"
- ]
- ],
- "Peritoneal Fat": [
- [
- "FT_2A_0805_M",
- "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5"
- ],
- [
- "FT_2A_0605_Rz",
- "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8"
- ]
- ],
- "Phenotypes": [
- [
- "HXBBXHPublish",
- "HXBBXH Published Phenotypes"
- ]
- ]
- },
- "SRxSHRSPF2": {
- "Eye": [
- [
- "UIOWA_Eye_RMA_0906",
- "UIOWA Eye mRNA RAE230v2 (Sep06) RMA"
- ]
- ],
- "Genotypes": [
- [
- "SRxSHRSPF2Geno",
- "SRxSHRSPF2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "SRxSHRSPF2Publish",
- "SRxSHRSPF2 Published Phenotypes"
- ]
- ]
- }
- },
- "soybean": {
- "J12XJ58F2": {
- "Genotypes": [
- [
- "J12XJ58F2Geno",
- "J12XJ58F2 Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "J12XJ58F2Publish",
- "J12XJ58F2 Published Phenotypes"
- ]
- ]
- }
- },
- "tomato": {
- "LXP": {
- "Genotypes": [
- [
- "LXPGeno",
- "LXP Genotypes"
- ]
- ],
- "Phenotypes": [
- [
- "LXPPublish",
- "LXP Published Phenotypes"
- ]
- ]
- }
- }
- },
- "groups": {
- "All Species": [
- [
- "All Groups",
- "All Groups"
- ]
- ],
- "arabidopsis": [
- [
- "BayXSha",
- "BayXSha"
- ],
- [
- "ColXBur",
- "ColXBur"
- ],
- [
- "ColXCvi",
- "ColXCvi"
- ]
- ],
- "barley": [
- [
- "QSM",
- "QSM"
- ],
- [
- "SXM",
- "SXM"
- ]
- ],
- "drosophila": [
- [
- "DGRP",
- "Drosophila Genetic Reference Panel"
- ],
- [
- "Oregon-R_x_2b3",
- "Oregon-R x 2b3"
- ]
- ],
- "human": [
- [
- "AD-cases-controls",
- "AD Cases & Controls (Liang)"
- ],
- [
- "AD-cases-controls-Myers",
- "AD Cases & Controls (Myers)"
- ],
- [
- "CANDLE",
- "CANDLE"
- ],
- [
- "CEPH-2004",
- "CEPH Families"
- ],
- [
- "HB",
- "Harvard Brain Tissue Resource Center"
- ],
- [
- "HLC",
- "Human Liver Cohort"
- ],
- [
- "HSB",
- "KIN/YSM"
- ]
- ],
- "macaque monkey": [
- [
- "Macaca-fasicularis",
- "Macaca fasicularis (Cynomolgus monkey)"
- ]
- ],
- "mouse": [
- [
- "AKXD",
- "AKXD"
- ],
- [
- "AXBXA",
- "AXB/BXA"
- ],
- [
- "B6BTBRF2",
- "B6BTBRF2"
- ],
- [
- "B6D2F2",
- "B6D2F2"
- ],
- [
- "BDF2-1999",
- "BDF2 UCLA"
- ],
- [
- "BDF2-2005",
- "BDF2-2005"
- ],
- [
- "BHF2",
- "BHF2 (Apoe Null) UCLA"
- ],
- [
- "BHHBF2",
- "BH/HB F2 UCLA"
- ],
- [
- "BXD",
- "BXD"
- ],
- [
- "BXH",
- "BXH"
- ],
- [
- "CTB6F2",
- "CastB6/B6Cast F2 UCLA"
- ],
- [
- "CXB",
- "CXB"
- ],
- [
- "HS",
- "Heterogeneous Stock"
- ],
- [
- "HS-CC",
- "Heterogeneous Stock Collaborative Cross"
- ],
- [
- "LXS",
- "LXS"
- ],
- [
- "MDP",
- "Mouse Diversity Panel"
- ],
- [
- "NZBXFVB-N2",
- "NZB/FVB N2 NCI"
- ]
- ],
- "rat": [
- [
- "HXBBXH",
- "HXB/BXH"
- ],
- [
- "SRxSHRSPF2",
- "UIOWA SRxSHRSP F2"
- ]
- ],
- "soybean": [
- [
- "J12XJ58F2",
- "J12XJ58F2"
- ]
- ],
- "tomato": [
- [
- "LXP",
- "LXP"
- ]
- ]
- },
- "species": [
- [
- "human",
- "Human"
- ],
- [
- "macaque monkey",
- "Macaque monkey"
- ],
- [
- "mouse",
- "Mouse"
- ],
- [
- "rat",
- "Rat"
- ],
- [
- "drosophila",
- "Drosophila"
- ],
- [
- "arabidopsis",
- "Arabidopsis thaliana"
- ],
- [
- "barley",
- "Barley"
- ],
- [
- "soybean",
- "Soybean"
- ],
- [
- "tomato",
- "Tomato"
- ],
- [
- "All Species",
- "All Species"
- ]
- ],
- "types": {
- "All Species": {
- "All Groups": [
- [
- "Phenotypes",
- "Phenotypes"
- ]
- ]
- },
- "arabidopsis": {
- "BayXSha": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXBur": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ],
- "ColXCvi": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
- "barley": {
- "QSM": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Leaf",
- "Leaf mRNA"
- ]
- ],
- "SXM": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Embryo",
- "Embryo mRNA"
- ],
- [
- "Leaf",
- "Leaf mRNA"
- ]
- ]
- },
- "drosophila": {
- "DGRP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Whole Body",
- "Whole Body mRNA"
- ]
- ],
- "Oregon-R_x_2b3": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Whole Body",
- "Whole Body mRNA"
- ]
- ]
- },
- "human": {
- "AD-cases-controls": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
- "AD-cases-controls-Myers": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
- "CANDLE": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Newborn Cord Blood",
- "Newborn Cord Blood mRNA"
- ]
- ],
- "CEPH-2004": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Lymphoblast B-cell",
- "Lymphoblast B-cell mRNA"
- ]
- ],
- "HB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Cerebellum",
- "Cerebellum mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Primary Visual Cortex",
- "Primary Visual Cortex mRNA"
- ]
- ],
- "HLC": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "HSB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Caudal Ganglionic Eminence",
- "Caudal Ganglionic Eminence mRNA"
- ],
- [
- "Cerebellar Cortex",
- "Cerebellar Cortex mRNA"
- ],
- [
- "Diencephalon",
- "Diencephalon mRNA"
- ],
- [
- "Dorsal Thalamus",
- "Dorsal Thalamus mRNA"
- ],
- [
- "Dorsolateral Prefrontal Cortex",
- "Dorsolateral Prefrontal Cortex mRNA"
- ],
- [
- "Frontal Cerebral Wall",
- "Frontal Cerebral Wall mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Inferior Temporal Cortex",
- "Inferior Temporal Cortex mRNA"
- ],
- [
- "Lateral Ganglionic Eminence",
- "Lateral Ganglionic Eminence mRNA"
- ],
- [
- "Medial Ganglionic Eminence",
- "Medial Ganglionic Eminence mRNA"
- ],
- [
- "Medial Prefrontal Cortex",
- "Medial Prefrontal Cortex mRNA"
- ],
- [
- "Mediodorsal Nucleus of Thalamus",
- "Mediodorsal Nucleus of Thalamus mRNA"
- ],
- [
- "Occipital Cerebral Wall",
- "Occipital Cerebral Wall mRNA"
- ],
- [
- "Orbital Prefrontal Cortex",
- "Orbital Prefrontal Cortex mRNA"
- ],
- [
- "Parietal Cerebral Wall",
- "Parietal Cerebral Wall mRNA"
- ],
- [
- "Posterior Inferior Parietal Cortex",
- "Posterior Inferior Parietal Cortex mRNA"
- ],
- [
- "Posterior Superior Temporal Cortex",
- "Posterior Superior Temporal Cortex mRNA"
- ],
- [
- "Primary Auditory (A1) Cortex",
- "Primary Auditory (A1) Cortex mRNA"
- ],
- [
- "Primary Motor (M1) Cortex",
- "Primary Motor (M1) Cortex mRNA"
- ],
- [
- "Primary Somatosensory (S1) Cortex",
- "Primary Somatosensory (S1) Cortex mRNA"
- ],
- [
- "Primary Visual Cortex",
- "Primary Visual Cortex mRNA"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ],
- [
- "Temporal Cerebral Wall",
- "Temporal Cerebral Wall mRNA"
- ],
- [
- "Upper (Rostral) Rhombic Lip",
- "Upper (Rostral) Rhombic Lip mRNA"
- ],
- [
- "Ventral Forebrain",
- "Ventral Forebrain mRNA"
- ],
- [
- "Ventrolateral Prefrontal Cortex",
- "Ventrolateral Prefrontal Cortex mRNA"
- ]
- ]
- },
- "macaque monkey": {
- "Macaca-fasicularis": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Nucleus Accumbens",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ]
- ]
- },
- "mouse": {
- "AKXD": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Mammary Tumors",
- "Mammary Tumors mRNA"
- ]
- ],
- "AXBXA": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Eye",
- "Eye mRNA"
- ]
- ],
- "B6BTBRF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "B6D2F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Brain",
- "Brain mRNA"
- ]
- ],
- "BDF2-1999": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "BDF2-2005": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ]
- ],
- "BHF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "BHHBF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "BXD": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Amygdala",
- "Amygdala mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Cartilage",
- "Cartilage mRNA"
- ],
- [
- "Cerebellum",
- "Cerebellum mRNA"
- ],
- [
- "Eye",
- "Eye mRNA"
- ],
- [
- "Hematopoietic Cells",
- "Hematopoietic Cells mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Hypothalamus",
- "Hypothalamus mRNA"
- ],
- [
- "Kidney",
- "Kidney mRNA"
- ],
- [
- "Leucocytes",
- "Leucocytes mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Lung",
- "Lung mRNA"
- ],
- [
- "Midbrain",
- "Midbrain mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ],
- [
- "Neocortex",
- "Neocortex mRNA"
- ],
- [
- "Nucleus Accumbens",
- "Nucleus Accumbens mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ],
- [
- "Retina",
- "Retina mRNA"
- ],
- [
- "Spleen",
- "Spleen mRNA"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ],
- [
- "T Cell (helper)",
- "T Cell (helper) mRNA"
- ],
- [
- "T Cell (regulatory)",
- "T Cell (regulatory) mRNA"
- ],
- [
- "Thymus",
- "Thymus mRNA"
- ],
- [
- "Ventral Tegmental Area",
- "Ventral Tegmental Area mRNA"
- ]
- ],
- "BXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Cartilage",
- "Cartilage mRNA"
- ]
- ],
- "CTB6F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adipose",
- "Adipose mRNA"
- ],
- [
- "Brain",
- "Brain mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Muscle",
- "Muscle mRNA"
- ]
- ],
- "CXB": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Spleen",
- "Spleen mRNA"
- ]
- ],
- "HS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Lung",
- "Lung mRNA"
- ]
- ],
- "HS-CC": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Striatum",
- "Striatum mRNA"
- ]
- ],
- "LXS": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Prefrontal Cortex",
- "Prefrontal Cortex mRNA"
- ]
- ],
- "MDP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ]
- ],
- "NZBXFVB-N2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Mammary Tumors",
- "Mammary Tumors mRNA"
- ]
- ]
- },
- "rat": {
- "HXBBXH": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Adrenal Gland",
- "Adrenal Gland mRNA"
- ],
- [
- "Heart",
- "Heart mRNA"
- ],
- [
- "Hippocampus",
- "Hippocampus mRNA"
- ],
- [
- "Kidney",
- "Kidney mRNA"
- ],
- [
- "Liver",
- "Liver mRNA"
- ],
- [
- "Peritoneal Fat",
- "Peritoneal Fat mRNA"
- ]
- ],
- "SRxSHRSPF2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ],
- [
- "Eye",
- "Eye mRNA"
- ]
- ]
- },
- "soybean": {
- "J12XJ58F2": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- },
- "tomato": {
- "LXP": [
- [
- "Phenotypes",
- "Phenotypes"
- ],
- [
- "Genotypes",
- "Genotypes"
- ]
- ]
- }
- }
-} \ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_items.js b/wqflask/wqflask/static/new/javascript/dataset_select_items.js
deleted file mode 100755
index 33ff34cb..00000000
--- a/wqflask/wqflask/static/new/javascript/dataset_select_items.js
+++ /dev/null
@@ -1,773 +0,0 @@
-window.sArr = [
-{txt:'',val:''},
-{txt:'Human',val:'human'},
-{txt:'Macaque monkey',val:'macaque monkey'},
-{txt:'Mouse',val:'mouse'},
-{txt:'Rat',val:'rat'},
-{txt:'Drosophila',val:'drosophila'},
-{txt:'Arabidopsis thaliana',val:'arabidopsis'},
-{txt:'Barley',val:'barley'},
-{txt:'Soybean',val:'soybean'},
-{txt:'Tomato',val:'tomato'},
-{txt:'All Species',val:'All Species'}];
-
-window.gArr = [
-{txt:'',val:''},
-{txt:'AD Cases & Controls (Liang)',val:'AD-cases-controls'},
-{txt:'AD Cases & Controls (Myers)',val:'AD-cases-controls-Myers'},
-{txt:'AKXD',val:'AKXD'},
-{txt:'AXB/BXA',val:'AXBXA'},
-{txt:'B6BTBRF2',val:'B6BTBRF2'},
-{txt:'B6D2F2',val:'B6D2F2'},
-{txt:'BayXSha',val:'BayXSha'},
-{txt:'BDF2 UCLA',val:'BDF2-1999'},
-{txt:'BDF2-2005',val:'BDF2-2005'},
-{txt:'BHF2 (Apoe Null) UCLA',val:'BHF2'},
-{txt:'BH/HB F2 UCLA',val:'BHHBF2'},
-{txt:'BXD',val:'BXD'},
-{txt:'BXH',val:'BXH'},
-{txt:'CANDLE',val:'CANDLE'},
-{txt:'CEPH Families',val:'CEPH-2004'},
-{txt:'ColXBur',val:'ColXBur'},
-{txt:'ColXCvi',val:'ColXCvi'},
-{txt:'CastB6/B6Cast F2 UCLA',val:'CTB6F2'},
-{txt:'CXB',val:'CXB'},
-{txt:'Drosophila Genetic Reference Panel',val:'DGRP'},
-{txt:'Harvard Brain Tissue Resource Center',val:'HB'},
-{txt:'Human Liver Cohort',val:'HLC'},
-{txt:'Heterogeneous Stock',val:'HS'},
-{txt:'Heterogeneous Stock Collaborative Cross',val:'HS-CC'},
-{txt:'KIN/YSM',val:'HSB'},
-{txt:'HXB/BXH',val:'HXBBXH'},
-{txt:'J12XJ58F2',val:'J12XJ58F2'},
-{txt:'LXP',val:'LXP'},
-{txt:'LXS',val:'LXS'},
-{txt:'Macaca fasicularis (Cynomolgus monkey)',val:'Macaca-fasicularis'},
-{txt:'Mouse Diversity Panel',val:'MDP'},
-{txt:'NZB/FVB N2 NCI',val:'NZBXFVB-N2'},
-{txt:'Oregon-R x 2b3',val:'Oregon-R_x_2b3'},
-{txt:'QSM',val:'QSM'},
-{txt:'UIOWA SRxSHRSP F2',val:'SRxSHRSPF2'},
-{txt:'SXM',val:'SXM'},
-{txt:'All Groups',val:'all groups'}];
-
-window.tArr = [
-{txt:'',val:''},
-{txt:'Adipose mRNA',val:'Adipose'},
-{txt:'Adrenal Gland mRNA',val:'Adrenal Gland'},
-{txt:'Amygdala mRNA',val:'Amygdala'},
-{txt:'Brain mRNA',val:'Brain'},
-{txt:'Cartilage mRNA',val:'Cartilage'},
-{txt:'Caudal Ganglionic Eminence mRNA',val:'Caudal Ganglionic Eminence'},
-{txt:'Cerebellar Cortex mRNA',val:'Cerebellar Cortex'},
-{txt:'Cerebellum mRNA',val:'Cerebellum'},
-{txt:'Diencephalon mRNA',val:'Diencephalon'},
-{txt:'Dorsal Thalamus mRNA',val:'Dorsal Thalamus'},
-{txt:'Dorsolateral Prefrontal Cortex mRNA',val:'Dorsolateral Prefrontal Cortex'},
-{txt:'Embryo mRNA',val:'Embryo'},
-{txt:'Eye mRNA',val:'Eye'},
-{txt:'Frontal Cerebral Wall mRNA',val:'Frontal Cerebral Wall'},
-{txt:'Heart mRNA',val:'Heart'},
-{txt:'Hematopoietic Cells mRNA',val:'Hematopoietic Cells'},
-{txt:'Hippocampus mRNA',val:'Hippocampus'},
-{txt:'Hypothalamus mRNA',val:'Hypothalamus'},
-{txt:'Inferior Temporal Cortex mRNA',val:'Inferior Temporal Cortex'},
-{txt:'Kidney mRNA',val:'Kidney'},
-{txt:'Lateral Ganglionic Eminence mRNA',val:'Lateral Ganglionic Eminence'},
-{txt:'Leaf mRNA',val:'Leaf'},
-{txt:'Leucocytes mRNA',val:'Leucocytes'},
-{txt:'Liver mRNA',val:'Liver'},
-{txt:'Lung mRNA',val:'Lung'},
-{txt:'Lymphoblast B-cell mRNA',val:'Lymphoblast B-cell'},
-{txt:'Mammary Tumors mRNA',val:'Mammary Tumors'},
-{txt:'Medial Ganglionic Eminence mRNA',val:'Medial Ganglionic Eminence'},
-{txt:'Medial Prefrontal Cortex mRNA',val:'Medial Prefrontal Cortex'},
-{txt:'Mediodorsal Nucleus of Thalamus mRNA',val:'Mediodorsal Nucleus of Thalamus'},
-{txt:'Midbrain mRNA',val:'Midbrain'},
-{txt:'Muscle mRNA',val:'Muscle'},
-{txt:'Neocortex mRNA',val:'Neocortex'},
-{txt:'Newborn Cord Blood mRNA',val:'Newborn Cord Blood'},
-{txt:'Nucleus Accumbens mRNA',val:'Nucleus Accumbens'},
-{txt:'Occipital Cerebral Wall mRNA',val:'Occipital Cerebral Wall'},
-{txt:'Orbital Prefrontal Cortex mRNA',val:'Orbital Prefrontal Cortex'},
-{txt:'Parietal Cerebral Wall mRNA',val:'Parietal Cerebral Wall'},
-{txt:'Peritoneal Fat mRNA',val:'Peritoneal Fat'},
-{txt:'Posterior Inferior Parietal Cortex mRNA',val:'Posterior Inferior Parietal Cortex'},
-{txt:'Posterior Superior Temporal Cortex mRNA',val:'Posterior Superior Temporal Cortex'},
-{txt:'Prefrontal Cortex mRNA',val:'Prefrontal Cortex'},
-{txt:'Primary Auditory (A1) Cortex mRNA',val:'Primary Auditory (A1) Cortex'},
-{txt:'Primary Motor (M1) Cortex mRNA',val:'Primary Motor (M1) Cortex'},
-{txt:'Primary Somatosensory (S1) Cortex mRNA',val:'Primary Somatosensory (S1) Cortex'},
-{txt:'Primary Visual Cortex mRNA',val:'Primary Visual Cortex'},
-{txt:'Retina mRNA',val:'Retina'},
-{txt:'Spleen mRNA',val:'Spleen'},
-{txt:'Striatum mRNA',val:'Striatum'},
-{txt:'T Cell (helper) mRNA',val:'T Cell (helper)'},
-{txt:'T Cell (regulatory) mRNA',val:'T Cell (regulatory)'},
-{txt:'Temporal Cerebral Wall mRNA',val:'Temporal Cerebral Wall'},
-{txt:'Thymus mRNA',val:'Thymus'},
-{txt:'Upper (Rostral) Rhombic Lip mRNA',val:'Upper (Rostral) Rhombic Lip'},
-{txt:'Ventral Forebrain mRNA',val:'Ventral Forebrain'},
-{txt:'Ventral Tegmental Area mRNA',val:'Ventral Tegmental Area'},
-{txt:'Ventrolateral Prefrontal Cortex mRNA',val:'Ventrolateral Prefrontal Cortex'},
-{txt:'Whole Body mRNA',val:'Whole Body'},
-{txt:'Phenotypes',val:'Phenotypes'},
-{txt:'Genotypes',val:'Genotypes'}];
-
-window.dArr = [
-{txt:'',val:''},
-{txt:'GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv',val:'GSE15222_F_A_RI_0409'},
-{txt:'GSE15222 Human Brain Normal Myers (Apr09) RankInv',val:'GSE15222_F_N_RI_0409'},
-{txt:'Normal HEI Retina (April 2010) RankInv',val:'G2NEI_ILM_Retina_BXD_RI0410'},
-{txt:'Full HEI Retina (April 2010) RankInv',val:'Illum_Retina_BXD_RankInv0410'},
-{txt:'ONC HEI Retina (April 2012) RankInv',val:'ONCRetILM6_0412'},
-{txt:'B6D2 ONC Retina (April 2012) RankInv **',val:'B6D2ONCILM_0412'},
-{txt:'INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **',val:'INIA_MacFas_Ac_RMA_0110'},
-{txt:'UCLA CTB6/B6CTF2 Liver (2005) mlratio',val:'UCLA_CTB6B6CTF2_LIVER_2005'},
-{txt:'UCLA CTB6/B6CTF2 Adipose (2005) mlratio',val:'UCLA_CTB6B6CTF2_ADIPOSE_2005'},
-{txt:'UCLA CTB6/B6CTF2 Brain (2005) mlratio',val:'UCLA_CTB6B6CTF2_BRAIN_2005'},
-{txt:'UCLA CTB6/B6CTF2 Muscle (2005) mlratio',val:'UCLA_CTB6B6CTF2_MUSCLE_2005'},
-{txt:'INIA Macaca fasicularis Hippocampus (Jan10) RMA **',val:'INIA_MacFas_Hc_RMA_0110'},
-{txt:'UCLA CTB6B6CTF2 Muscle Female mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_FEMALE'},
-{txt:'INIA Macaca fasicularis Amygdala (Jan10) RMA **',val:'INIA_MacFas_AMG_RMA_0110'},
-{txt:'UCLA CTB6B6CTF2 Adipose Female mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_FEMALE'},
-{txt:'UCLA CTB6B6CTF2 Brain Female mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_FEMALE'},
-{txt:'UCLA CTB6B6CTF2 Liver Female mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_FEMALE'},
-{txt:'VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile **',val:'VUBXDMouseMidBrainQ0512'},
-{txt:'GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA',val:'GSE16780_UCLA_ML0911'},
-{txt:'EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleRMA1211'},
-{txt:'EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleHFDRMA1211'},
-{txt:'EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **',val:'EPFLMouseMuscleCDRMA1211'},
-{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1111'},
-{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1111'},
-{txt:'G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **',val:'G2HEIONCRetILM6_0911'},
-{txt:'HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv **',val:'HEIONCvsCRetILM6_0911'},
-{txt:'JAX Liver Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_0711'},
-{txt:'JAX Liver HF Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_HF_0711'},
-{txt:'JAX Liver 6C Affy M430 2.0 (Jul11) MDP',val:'JAX_CSB_L_6C_0711'},
-{txt:'CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT **',val:'CANDLE_NB_0711'},
-{txt:'KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_AMY_0711'},
-{txt:'KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_A1C_0711'},
-{txt:'KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_TC_0711'},
-{txt:'KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CBC_0711'},
-{txt:'KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_CGE_0711'},
-{txt:'KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_FC_0711'},
-{txt:'KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_S1C_0711'},
-{txt:'KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STR_0711'},
-{txt:'KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_URL_0711'},
-{txt:'KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_V1C_0711'},
-{txt:'KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VF_0711'},
-{txt:'KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_VFC_0711'},
-{txt:'KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_STC_0711'},
-{txt:'KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_ITC_0711'},
-{txt:'KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_LGE_0711'},
-{txt:'KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_M1C_0711'},
-{txt:'KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MD_0711'},
-{txt:'KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_IPC_0711'},
-{txt:'KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_HIP_0711'},
-{txt:'KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MFC_0711'},
-{txt:'KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DFC_0711'},
-{txt:'KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DIE_0711'},
-{txt:'KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_MGE_0711'},
-{txt:'KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_DTH_0711'},
-{txt:'KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_PC_0711'},
-{txt:'KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OC_0711'},
-{txt:'KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **',val:'KIN_YSM_OFC_0711'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio',val:'HBTRC-MLC_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio',val:'HBTRC-MLC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLPFC_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio',val:'HBTRC-MLC_AD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio',val:'HBTRC-MLVC_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLPFC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLPFC_AD_0611'},
-{txt:'HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio',val:'HBTRC-MLC_HD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio',val:'HBTRC-MLVC_N_0611'},
-{txt:'HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLPFC_HD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio',val:'HBTRC-MLVC_AD_0611'},
-{txt:'HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio',val:'HBTRC-MLVC_HD_0611'},
-{txt:'INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA',val:'INIA_AmgCoh_0311'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA',val:'INIA_Amg_BLA_RMA_1110'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male',val:'INIA_Amg_BLA_RMA_M_1110'},
-{txt:'INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female',val:'INIA_Amg_BLA_RMA_F_1110'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Both Sexes',val:'HLC_0311'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Males',val:'HLCM_0311'},
-{txt:'HZI Thelp M430v2 (Feb11) RMA',val:'RTHC_0211_R'},
-{txt:'GSE5281 Human Brain Normal Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_N_0709'},
-{txt:'GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA',val:'GSE5281_F_RMA_Alzh_0709'},
-{txt:'OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv',val:'OHSU_HS-CC_ILMStr_0211'},
-{txt:'NCSU Drosophila Whole Body (Jan11) RMA',val:'NCSU_DrosWB_LC_RMA_0111'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females',val:'LV_G_0106_F'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males',val:'LV_G_0106_M'},
-{txt:'UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes',val:'LV_G_0106_B'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **',val:'GenEx_BXD_liverSal_RMA_F_0211'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males **',val:'GenEx_BXD_liverSal_RMA_M_0211'},
-{txt:'GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes **',val:'GenEx_BXD_liverSal_RMA_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females **',val:'GenEx_BXD_liverEt_RMA_F_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males **',val:'GenEx_BXD_liverEt_RMA_M_0211'},
-{txt:'GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes **',val:'GenEx_BXD_liverEt_RMA_0211'},
-{txt:'SUH BXD Liver Affy Mouse Gene 1.0 ST (Jun11) RMA **',val:'SUH_Liv_RMA_0611'},
-{txt:'HQF BXD Striatum ILM6.1 (Dec10v2) RankInv',val:'UTHSC_Striatum_RankInv_1210'},
-{txt:'HQF BXD Striatum ILM6.1 (Dec10) RankInv',val:'UTHSC_Str_RankInv_1210'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv',val:'HQFNeoc_1210v2_RankInv'},
-{txt:'UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA',val:'UTHSC_SPL_RMA_1210'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv',val:'HQFNeoc_1210_RankInv'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)',val:'INIA_Hyp_RMA_1110'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male',val:'INIA_Hyp_M_RMA_1110'},
-{txt:'INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female',val:'INIA_Hyp_F_RMA_1110'},
-{txt:'UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA',val:'UTHSC_SPL_RMA_1010'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) RMA MDP',val:'HC_M2_0606_MDP'},
-{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA MDP',val:'UMUTAffyExon_0209_RMA_MDP'},
-{txt:'OX UK HS ILM6v1.1 Lung (May 2010) RankInv',val:'OXUKHS_ILMLung_RI0510'},
-{txt:'OX UK HS ILM6v1.1 Liver (May 2010) RankInv',val:'OXUKHS_ILMLiver_RI0510'},
-{txt:'OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv',val:'OXUKHS_ILMHipp_RI0510'},
-{txt:'INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **',val:'INIA_MacFas_Pf_RMA_0110'},
-{txt:'INIA Macaca fasicularis Brain (Jan10) RMA **',val:'INIA_MacFas_brain_RMA_0110'},
-{txt:'UAB Whole body D.m. mRNA control (Oct09) RMA',val:'UAB_DrosWB_LC_RMA_1009'},
-{txt:'UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA',val:'UAB_DrosWB_LE_RMA_1009'},
-{txt:'UMCG Stem Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_HemaStem_ori'},
-{txt:'UMCG Stem Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_HemaStem'},
-{txt:'UMCG Progenitor Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Pro_ori'},
-{txt:'UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Pro'},
-{txt:'UMCG Erythroid Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Eryth_ori'},
-{txt:'UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Eryth'},
-{txt:'UMCG Myeloid Cells ILM6v1.1 (Apr09) original',val:'UMCG_0907_Myeloid_ori'},
-{txt:'UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed',val:'UMCG_0907_Myeloid'},
-{txt:'UTHSC CEPH B-cells Illumina (Sep09) RankInv',val:'UT_CEPH_RankInv0909'},
-{txt:'Mouse kidney M430v2 Female (Aug06) RMA',val:'MA_M2F_0706_R'},
-{txt:'Mouse kidney M430v2 Male (Aug06) RMA',val:'MA_M2M_0706_R'},
-{txt:'Barley1 Leaf INOC TTKS (Aug09) RMA',val:'B1LI0809R'},
-{txt:'Barley1 Leaf INOC TTKS (Aug09) MAS5',val:'B1LI0809M5'},
-{txt:'Barley1 Leaf MOCK TTKS (Aug09) MAS5',val:'B1MI0809M5'},
-{txt:'Barley1 Leaf MOCK TTKS (Aug09) RMA',val:'B1MI0809R'},
-{txt:'GSE15222 Human Brain Myers (Apr09) RankInv',val:'GSE15222_F_RI_0409'},
-{txt:'GSE5281 Human Brain Full Liang (Jul09) RMA',val:'GSE5281_F_RMA0709'},
-{txt:'GSE5281 Human Brain Best 102 Liang (Jul09) RMA',val:'GSE5281_RMA0709'},
-{txt:'UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA',val:'UT_HippRatEx_RMA_0709'},
-{txt:'VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **',val:'VCUEtOH_0609_R'},
-{txt:'VCU BXD VTA Sal M430 2.0 (Jun09) RMA **',val:'VCUSal_0609_R'},
-{txt:'VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **',val:'VCUEtvsSal_0609_R'},
-{txt:'IoP Affy MOE 430v2 Spleen (May09) RMA',val:'IoP_SPL_RMA_0509'},
-{txt:'NCI Mammary M430v2 (Apr09) RMA',val:'NCI_Mam_Tum_RMA_0409'},
-{txt:'NCI Mammary LMT miRNA v2 (Apr09) RMA',val:'NCI_Agil_Mam_Tum_RMA_0409'},
-{txt:'MDC/CAS/UCL Liver 230v2 (Dec08) RMA',val:'HXB_Liver_1208'},
-{txt:'MDC/CAS/UCL Heart 230_V2 (Dec08) RMA',val:'HXB_Heart_1208'},
-{txt:'MDC/CAS/UCL Adrenal 230A (Dec08) RMA',val:'HXB_Adrenal_1208'},
-{txt:'UWA Illumina PBL (Nov08) RSN **',val:'Illum_BXD_PBL_1108'},
-{txt:'UWA Illumina Thymus (Nov08) RSN **',val:'Illum_BXD_Thy_1108'},
-{txt:'UWA Illumina Spleen (Nov08) RSN **',val:'Illum_BXD_Spl_1108'},
-{txt:'Monks CEPH B-cells Agilent (Dec04) Log10Ratio',val:'Human_1008'},
-{txt:'UTK Spleen ILM6.1 (Jan10) VST',val:'UTK_BXDSpl_VST_0110'},
-{txt:'Eye AXBXA Illumina V6.2(Oct08) RankInv Beta',val:'Eye_AXBXA_1008_RankInv'},
-{txt:'Eye M430v2 (Sep08) RMA',val:'Eye_M2_0908_R'},
-{txt:'Eye M430v2 Mutant Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_NB'},
-{txt:'Eye M430v2 WT Gpnmb (Sep08) RMA **',val:'Eye_M2_0908_R_ND'},
-{txt:'Eye M430v2 Mutant Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_MT'},
-{txt:'Eye M430v2 WT WT (Sep08) RMA **',val:'Eye_M2_0908_WTWT'},
-{txt:'Eye M430v2 WT Tyrp1 (Sep08) RMA **',val:'Eye_M2_0908_R_WT'},
-{txt:'BXD Glaucoma Affy M430 2.0 Trial (Sep11) RMA **',val:'BXD_GLA_0911'},
-{txt:'UCLA BXH and BXD Cartilage v2',val:'UCLA_BXHBXD_CARTILAGE_V2'},
-{txt:'UCLA BXD and BXH Cartilage v2',val:'UCLA_BXDBXH_CARTILAGE_V2'},
-{txt:'UCLA BXD and BXH Cartilage',val:'UCLA_BXDBXH_CARTILAGE'},
-{txt:'UCLA BXH and BXD Cartilage',val:'UCLA_BXHBXD_CARTILAGE'},
-{txt:'UCLA BHF2 Brain Male mlratio',val:'UCLA_BHF2_BRAIN_MALE'},
-{txt:'UCLA BHF2 Brain Female mlratio',val:'UCLA_BHF2_BRAIN_FEMALE'},
-{txt:'UCLA BHF2 Adipose Female mlratio',val:'UCLA_BHF2_ADIPOSE_FEMALE'},
-{txt:'UCLA BHF2 Adipose Male mlratio',val:'UCLA_BHF2_ADIPOSE_MALE'},
-{txt:'UCLA CTB6B6CTF2 Muscle Male mlratio **',val:'UCLA_CTB6B6CTF2_MUSCLE_MALE'},
-{txt:'UCLA CTB6B6CTF2 Liver Male mlratio **',val:'UCLA_CTB6B6CTF2_LIVER_MALE'},
-{txt:'UCLA CTB6B6CTF2 Brain Male mlratio **',val:'UCLA_CTB6B6CTF2_BRAIN_MALE'},
-{txt:'UCLA CTB6B6CTF2 Adipose Male mlratio **',val:'UCLA_CTB6B6CTF2_ADIPOSE_MALE'},
-{txt:'UCLA BHF2 Liver Male mlratio',val:'UCLA_BHF2_LIVER_MALE'},
-{txt:'UCLA BHF2 Liver Female mlratio',val:'UCLA_BHF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Brain Female Only',val:'UCLA_BHHBF2_BRAIN_FEMALE'},
-{txt:'UCLA BHHBF2 Liver Female Only',val:'UCLA_BHHBF2_LIVER_FEMALE'},
-{txt:'UCLA BHHBF2 Muscle Male Only',val:'UCLA_BHHBF2_MUSCLE_MALE'},
-{txt:'UCLA BHHBF2 Muscle Female Only',val:'UCLA_BHHBF2_MUSCLE_FEMALE'},
-{txt:'UCLA BHHBF2 Liver Male Only',val:'UCLA_BHHBF2_LIVER_MALE'},
-{txt:'UCLA BHHBF2 Brain Male Only',val:'UCLA_BHHBF2_BRAIN_MALE'},
-{txt:'UCLA BHHBF2 Adipose Female Only',val:'UCLA_BHHBF2_ADIPOSE_FEMALE'},
-{txt:'UCLA BHHBF2 Adipose Male Only',val:'UCLA_BHHBF2_ADIPOSE_MALE'},
-{txt:'UCLA BHF2 Muscle Female mlratio **',val:'UCLA_BHF2_MUSCLE_FEMALE'},
-{txt:'UCLA BHF2 Muscle Male mlratio **',val:'UCLA_BHF2_MUSCLE_MALE'},
-{txt:'UCLA BXH Cartilage',val:'UCLA_BXH_CARTILAGE'},
-{txt:'UCLA BXD Cartilage',val:'UCLA_BXD_CARTILAGE'},
-{txt:'UCLA BHHBF2 Adipose (2005) mlratio **',val:'UCLA_BHHBF2_ADIPOSE_2005'},
-{txt:'UCLA BHHBF2 Brain (2005) mlratio **',val:'UCLA_BHHBF2_BRAIN_2005'},
-{txt:'UCLA BHHBF2 Liver (2005) mlratio **',val:'UCLA_BHHBF2_LIVER_2005'},
-{txt:'UCLA BHHBF2 Muscle (2005) mlratio **',val:'UCLA_BHHBF2_MUSCLE_2005'},
-{txt:'UCLA BHF2 Adipose (June05) mlratio',val:'UCLA_BHF2_ADIPOSE_0605'},
-{txt:'UCLA BDF2 Liver (1999) mlratio',val:'UCLA_BDF2_LIVER_1999'},
-{txt:'UCLA BHF2 Muscle (June05) mlratio **',val:'UCLA_BHF2_MUSCLE_0605'},
-{txt:'UCLA BHF2 Brain (June05) mlratio',val:'UCLA_BHF2_BRAIN_0605'},
-{txt:'UCLA BHF2 Liver (June05) mlratio',val:'UCLA_BHF2_LIVER_0605'},
-{txt:'HZI Lung M430v2 (Apr08) RMA',val:'HZI_0408_R'},
-{txt:'HZI Lung M430v2 (Apr08) MAS5',val:'HZI_0408_M'},
-{txt:'HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv',val:'HQFNeoc_0208_RankInv'},
-{txt:'VCU BXD NA Sal M430 2.0 (Oct07) RMA',val:'VCUSalo_1007_R'},
-{txt:'VCU BXD NA EtOH M430 2.0 (Oct07) RMA **',val:'VCUEtOH_1007_R'},
-{txt:'VCU BXD NA Et vs Sal M430 2.0 (Oct07) Sscore **',val:'VCUSal_1007_R'},
-{txt:'Stuart Spleen M430v2 (Nov07) RMA',val:'STSPL_1107_R'},
-{txt:'HQF BXD Striatum ILM6.1 (Nov07) RankInv',val:'UTHSC_1107_RankInv'},
-{txt:'Hippocampus Illumina (Aug07) LOESS',val:'Illum_LXS_Hipp_loess0807'},
-{txt:'Hippocampus Illumina (Aug07) LOESS_NB',val:'Illum_LXS_Hipp_loess_nb0807'},
-{txt:'Hippocampus Illumina (Aug07) QUANT',val:'Illum_LXS_Hipp_quant0807'},
-{txt:'Hippocampus Illumina (Aug07) QUANT_NB',val:'Illum_LXS_Hipp_quant_nb0807'},
-{txt:'Hippocampus Illumina (Aug07) RSN',val:'Illum_LXS_Hipp_rsn0807'},
-{txt:'Hippocampus Illumina (Aug07) RSN_NB',val:'Illum_LXS_Hipp_rsn_nb0807'},
-{txt:'VCU BXD PFC EtOH M430 2.0 (Dec06) RMA',val:'VCUEtOH_1206_R'},
-{txt:'VCU BXD PFC Sal M430 2.0 (Dec06) RMA',val:'VCUSal_1206_R'},
-{txt:'VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore',val:'VCUSal_1006_R'},
-{txt:'VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **',val:'VCU_PF_Air_0111_R'},
-{txt:'VCU BXD PFC CIE EtOH M430 2.0 (Jan11) RMA **',val:'VCU_PF_Et_0111_R'},
-{txt:'VCU BXD PFC EtOH vs CIE Air M430 2.0 (Jan11) Sscore **',val:'VCU_PF_AvE_0111_Ss'},
-{txt:'Hippocampus Illumina (May07) RankInv',val:'Hipp_Illumina_RankInv_0507'},
-{txt:'VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **',val:'VCUEtOH_0806_R'},
-{txt:'VCU LXS PFC Sal M430A 2.0 (Aug06) RMA',val:'VCUSal_0806_R'},
-{txt:'VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **',val:'VCUEt_vs_Sal_0806_R'},
-{txt:'Barley1 Embryo gcRMA SCRI (Dec06)',val:'B139_K_1206_R'},
-{txt:'Barley1 Leaf MAS 5.0 SCRI (Dec06)',val:'B30_K_1206_M'},
-{txt:'Barley1 Leaf gcRMAn SCRI (Dec06)',val:'B30_K_1206_Rn'},
-{txt:'Barley1 Leaf gcRMA SCRI (Dec06)',val:'B30_K_1206_R'},
-{txt:'Barley1 Embryo MAS 5.0 SCRI (Dec06)',val:'B139_K_1206_M'},
-{txt:'UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA',val:'BR_M2_1106_R'},
-{txt:'HZI Treg M430v2 (Feb11) RMA',val:'RTC_1106_R'},
-{txt:'UIOWA Eye mRNA RAE230v2 (Sep06) RMA',val:'UIOWA_Eye_RMA_0906'},
-{txt:'Mouse kidney M430v2 Sex Balanced (Aug06) RMA',val:'MA_M2_0806_R'},
-{txt:'Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN',val:'MA_M2_0806_P'},
-{txt:'Mouse Kidney M430v2 (Jul06) PDNN',val:'MA_M2_0706_P'},
-{txt:'Mouse Kidney M430v2 (Jul06) RMA',val:'MA_M2_0706_R'},
-{txt:'Barley1 Embryo0 gcRMA SCRI (Apr06)',val:'B150_K_0406_R'},
-{txt:'INIA Brain mRNA M430 (Jun06) RMA',val:'IBR_M_0606_R'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) PDNN',val:'HC_M2_0606_P'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) MAS5',val:'HC_M2_0606_M'},
-{txt:'Hippocampus Consortium M430v2 (Jun06) RMA',val:'HC_M2_0606_R'},
-{txt:'INIA Brain mRNA M430 (Jan06) RMA',val:'IBR_M_0106_R'},
-{txt:'INIA Brain mRNA M430 (Jan06) PDNN',val:'IBR_M_0106_P'},
-{txt:'Hippocampus Consortium M430v2 CXB (Dec05) RMA',val:'HC_M2CB_1205_R'},
-{txt:'Hippocampus Consortium M430v2 CXB (Dec05) PDNN',val:'HC_M2CB_1205_P'},
-{txt:'UTHSC Brain mRNA U74Av2 (Nov05) PDNN',val:'BR_U_1105_P'},
-{txt:'UMUTAffy Hippocampus Exon (Feb09) RMA',val:'UMUTAffyExon_0209_RMA'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NON_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOS_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_NOE_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSS_0909'},
-{txt:'UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv',val:'UT_ILM_BXD_hipp_RSE_0909'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN',val:'SA_M2_0905_P'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA',val:'SA_M2_0905_R'},
-{txt:'OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5',val:'SA_M2_0905_M'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) RMA',val:'BR_U_0805_R'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) PDNN',val:'BR_U_0805_P'},
-{txt:'UTHSC Brain mRNA U74Av2 (Aug05) MAS5',val:'BR_U_0805_M'},
-{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5',val:'FT_2A_0805_M'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA',val:'BRF2_M_0805_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN',val:'BRF2_M_0805_P'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5',val:'BRF2_M_0805_M'},
-{txt:'MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8',val:'FT_2A_0605_Rz'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean',val:'SA_M2_0405_MC'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN',val:'GCB_M2_0505_P'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA',val:'GCB_M2_0505_R'},
-{txt:'GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5',val:'GCB_M2_0505_M'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) MAS5',val:'KI_2A_0405_M'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Clean',val:'SA_M2_0405_RC'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) PDNN Clean',val:'SA_M2_0405_PC'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) SScore',val:'SA_M2_0405_SS'},
-{txt:'HBP Rosen Striatum M430V2 (Apr05) RMA Orig',val:'SA_M2_0405_RR'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8',val:'KI_2A_0405_Rz'},
-{txt:'MDC/CAS/ICL Kidney 230A (Apr05) RMA',val:'KI_2A_0405_R'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) PDNN',val:'CB_M_0305_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) MAS5',val:'CB_M_0305_M'},
-{txt:'SJUT Cerebellum mRNA M430 (Mar05) RMA',val:'CB_M_0305_R'},
-{txt:'HQF Striatum Exon (Feb09) RMA',val:'Striatum_Exon_0209'},
-{txt:'BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P14RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P14RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov10) RankInv **',val:'DevStriatum_ILM6.2P3RInv_1110'},
-{txt:'BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv',val:'DevNeocortex_ILM6.2P3RInv_1110'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) MAS5',val:'CB_M_1004_M'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) PDNN',val:'CB_M_1004_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct04) RMA',val:'CB_M_1004_R'},
-{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5',val:'LVF2_M_0704_M'},
-{txt:'(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA',val:'LVF2_M_0704_R'},
-{txt:'NCI Mammary mRNA M430 (July04) MAS5',val:'MA_M_0704_M'},
-{txt:'NCI Mammary mRNA M430 (July04) RMA',val:'MA_M_0704_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN',val:'BRF2_M_0304_P'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA',val:'BRF2_M_0304_R'},
-{txt:'OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5',val:'BRF2_M_0304_M'},
-{txt:'GNF Stem Cells U74Av2 (Mar04) RMA',val:'HC_U_0304_R'},
-{txt:'INIA Brain mRNA M430 (Feb04) PDNN',val:'CB_M_0204_P'},
-{txt:'SJUT Cerebellum mRNA M430 (Oct03) MAS5',val:'CB_M_1003_M'},
-{txt:'Hippocampus Illumina NOS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOS_1008'},
-{txt:'Hippocampus Illumina RSE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSE_1008'},
-{txt:'GSE9588 Human Liver Normal (Mar11) Females',val:'HLCF_0311'},
-{txt:'Hippocampus Illumina RSS (Oct08) RankInv beta',val:'Illum_LXS_Hipp_RSS_1008'},
-{txt:'Hippocampus Illumina NOE (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NOE_1008'},
-{txt:'Hippocampus Illumina NON (Oct08) RankInv beta',val:'Illum_LXS_Hipp_NON_1008'},
-{txt:'CANDLE Published Phenotypes',val:'CANDLEPublish'},
-{txt:'HLC Published Phenotypes',val:'HLCPublish'},
-{txt:'AKXD Genotypes',val:'AKXDGeno'},
-{txt:'AXBXA Published Phenotypes',val:'AXBXAPublish'},
-{txt:'AXBXA Genotypes',val:'AXBXAGeno'},
-{txt:'B6BTBRF2 Published Phenotypes',val:'B6BTBRF2Publish'},
-{txt:'B6BTBRF2 Genotypes',val:'B6BTBRF2Geno'},
-{txt:'B6D2F2 Genotypes',val:'B6D2F2Geno'},
-{txt:'BDF2-1999 Genotypes',val:'BDF2-1999Geno'},
-{txt:'BDF2-2005 Genotypes',val:'BDF2-2005Geno'},
-{txt:'BHF2 Genotypes',val:'BHF2Geno'},
-{txt:'BHHBF2 Genotypes',val:'BHHBF2Geno'},
-{txt:'BXD Published Phenotypes',val:'BXDPublish'},
-{txt:'BXD Genotypes',val:'BXDGeno'},
-{txt:'BXH Published Phenotypes',val:'BXHPublish'},
-{txt:'BXH Genotypes',val:'BXHGeno'},
-{txt:'CTB6F2 Published Phenotypes',val:'CTB6F2Publish'},
-{txt:'CTB6F2 Genotypes',val:'CTB6F2Geno'},
-{txt:'CXB Published Phenotypes',val:'CXBPublish'},
-{txt:'CXB Genotypes',val:'CXBGeno'},
-{txt:'LXS Published Phenotypes',val:'LXSPublish'},
-{txt:'LXS Genotypes',val:'LXSGeno'},
-{txt:'Mouse Phenome Database',val:'MDPPublish'},
-{txt:'MDP Genotypes',val:'MDPGeno'},
-{txt:'NZBXFVB-N2 Published Phenotypes',val:'NZBXFVB-N2Publish'},
-{txt:'HXBBXH Published Phenotypes',val:'HXBBXHPublish'},
-{txt:'HXBBXH Genotypes',val:'HXBBXHGeno'},
-{txt:'BayXSha Published Phenotypes',val:'BayXShaPublish'},
-{txt:'BayXSha Genotypes',val:'BayXShaGeno'},
-{txt:'ColXBur Published Phenotypes',val:'ColXBurPublish'},
-{txt:'ColXBur Genotypes',val:'ColXBurGeno'},
-{txt:'ColXCvi Published Phenotypes',val:'ColXCviPublish'},
-{txt:'ColXCvi Genotypes',val:'ColXCviGeno'},
-{txt:'SXM Published Phenotypes',val:'SXMPublish'},
-{txt:'SXM Genotypes',val:'SXMGeno'},
-{txt:'J12XJ58F2 Published Phenotypes',val:'J12XJ58F2Publish'},
-{txt:'LXP Published Phenotypes',val:'LXPPublish'},
-{txt:'All Phenotypes',val:'_allPublish'}];
-
-window.lArr = [
- null,
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-
-
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
index df891826..a58efe2e 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.coffee
@@ -7,7 +7,7 @@ $ ->
populate_species()
apply_default()
- $.ajax '/static/new/javascript/dataset_menu_structure',
+ $.ajax '/static/new/javascript/dataset_menu_structure.json',
dataType: 'json'
success: process_json
@@ -15,6 +15,7 @@ $ ->
species_list = @jdata.species
redo_dropdown($('#species'), species_list)
populate_group()
+ window.populate_species = populate_species
populate_group = ->
console.log("in populate group")
@@ -22,6 +23,7 @@ $ ->
group_list = @jdata.groups[species]
redo_dropdown($('#group'), group_list)
populate_type()
+ window.populate_group = populate_group
populate_type = ->
species = $('#species').val()
@@ -29,6 +31,7 @@ $ ->
type_list = @jdata.types[species][group]
redo_dropdown($('#type'), type_list)
populate_dataset()
+ window.populate_type = populate_type
populate_dataset = ->
species = $('#species').val()
@@ -38,6 +41,7 @@ $ ->
dataset_list = @jdata.datasets[species][group][type]
console.log("pop_dataset:", dataset_list)
redo_dropdown($('#dataset'), dataset_list)
+ window.populate_dataset = populate_dataset
redo_dropdown = (dropdown, items) ->
console.log("in redo:", dropdown, items)
@@ -99,7 +103,9 @@ $ ->
$("##{item[0]}").val(defaults[item[0]])
if item[1]
- window["populate_" + item[1]]
+ populate_function = "populate_" + item[1]
+ console.log("Calling:", populate_function)
+ window[populate_function]()
diff --git a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
index 655aac15..681e4301 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
+++ b/wqflask/wqflask/static/new/javascript/dataset_select_menu.js
@@ -9,7 +9,7 @@
populate_species();
return apply_default();
};
- $.ajax('/static/new/javascript/dataset_menu_structure', {
+ $.ajax('/static/new/javascript/dataset_menu_structure.json', {
dataType: 'json',
success: process_json
});
@@ -19,6 +19,7 @@
redo_dropdown($('#species'), species_list);
return populate_group();
};
+ window.populate_species = populate_species;
populate_group = function() {
var group_list, species;
console.log("in populate group");
@@ -27,6 +28,7 @@
redo_dropdown($('#group'), group_list);
return populate_type();
};
+ window.populate_group = populate_group;
populate_type = function() {
var group, species, type_list;
species = $('#species').val();
@@ -35,6 +37,7 @@
redo_dropdown($('#type'), type_list);
return populate_dataset();
};
+ window.populate_type = populate_type;
populate_dataset = function() {
var dataset_list, group, species, type;
species = $('#species').val();
@@ -45,6 +48,7 @@
console.log("pop_dataset:", dataset_list);
return redo_dropdown($('#dataset'), dataset_list);
};
+ window.populate_dataset = populate_dataset;
redo_dropdown = function(dropdown, items) {
var item, _i, _len, _results;
console.log("in redo:", dropdown, items);
@@ -99,7 +103,7 @@
});
};
apply_default = function() {
- var defaults, item, _i, _len, _ref, _results;
+ var defaults, item, populate_function, _i, _len, _ref, _results;
defaults = $.cookie('search_defaults');
if (!defaults) {
return;
@@ -111,7 +115,9 @@
item = _ref[_i];
$("#" + item[0]).val(defaults[item[0]]);
if (item[1]) {
- _results.push(window["populate_" + item[1]]);
+ populate_function = "populate_" + item[1];
+ console.log("Calling:", populate_function);
+ _results.push(window[populate_function]());
} else {
_results.push(void 0);
}