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-rw-r--r--wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py7
1 files changed, 4 insertions, 3 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
index d374407e..173bae2e 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/convertlmm.py
@@ -16,6 +16,7 @@
# You should have received a copy of the GNU Affero General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
+from __future__ import print_function
from optparse import OptionParser
import sys
import os
@@ -144,10 +145,10 @@ if options.geno:
snps = plink.readbim(options.geno+'.bim')
msg("Converting geno "+options.geno+'.bed')
- def out(i,x):
- print i,x
+ # def out(i,x):
+ # print i,x
- snps = plink.readbed(options.geno+'.bed',num_inds, out)
+ snps = plink.readbed(options.geno+'.bed',num_inds, lambda i,x: print(i,x))
msg(str(count)+" geno lines written (with "+str(snps)+" snps)")
msg("Converting done")