diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/db_info.py | 31 |
1 files changed, 21 insertions, 10 deletions
diff --git a/wqflask/wqflask/db_info.py b/wqflask/wqflask/db_info.py index 45a4c96e..f420b472 100644 --- a/wqflask/wqflask/db_info.py +++ b/wqflask/wqflask/db_info.py @@ -1,10 +1,14 @@ -import http.client, urllib.request, urllib.error, urllib.parse +import http.client +import urllib.request +import urllib.error +import urllib.parse import re from flask import Flask, g from utility.logger import getLogger -logger = getLogger(__name__ ) +logger = getLogger(__name__) + class InfoPage(object): def __init__(self, start_vars): @@ -38,12 +42,15 @@ class InfoPage(object): "LEFT JOIN DatasetStatus USING (DatasetStatusId) WHERE ") if self.gn_accession_id: - final_query = query_base + "GN_AccesionId = {}".format(self.gn_accession_id) + final_query = query_base + \ + "GN_AccesionId = {}".format(self.gn_accession_id) results = g.db.execute(final_query).fetchone() if self.info_page_name and not results: - final_query = query_base + "InfoPageName={}".format(self.info_page_name) + final_query = query_base + \ + "InfoPageName={}".format(self.info_page_name) elif self.info_page_name: - final_query = query_base + "InfoPageName={}".format(self.info_page_name) + final_query = query_base + \ + "InfoPageName={}".format(self.info_page_name) results = g.db.execute(final_query).fetchone() else: raise 'No correct parameter found' @@ -52,18 +59,20 @@ class InfoPage(object): self.info = process_query_results(results) if (not results or len(results) < 1) and self.info_page_name and create: - insert_sql = "INSERT INTO InfoFiles SET InfoFiles.InfoPageName={}".format(self.info_page_name) + insert_sql = "INSERT INTO InfoFiles SET InfoFiles.InfoPageName={}".format( + self.info_page_name) return self.get_info() if not self.gn_accession_id and self.info: self.gn_accession_id = self.info['accession_id'] if not self.info_page_name and self.info: - self.info_page_name = self.info['info_page_name'] + self.info_page_name = self.info['info_page_name'] def get_datasets_list(self): self.filelist = [] try: - response = urllib.request.urlopen("http://datafiles.genenetwork.org/download/GN%s" % self.gn_accession_id) + response = urllib.request.urlopen( + "http://datafiles.genenetwork.org/download/GN%s" % self.gn_accession_id) data = response.read() matches = re.findall(r"<tr>.+?</tr>", data, re.DOTALL) @@ -71,10 +80,11 @@ class InfoPage(object): if i == 0: continue cells = re.findall(r"<td.+?>.+?</td>", match, re.DOTALL) - full_filename = re.search(r"<a href=\"(.+?)\"", cells[1], re.DOTALL).group(1).strip() + full_filename = re.search( + r"<a href=\"(.+?)\"", cells[1], re.DOTALL).group(1).strip() filename = full_filename.split("/")[-1] filesize = re.search(r">(.+?)<", cells[2]).group(1).strip() - filedate = "N/A" #ZS: Since we can't get it for now + filedate = "N/A" # ZS: Since we can't get it for now self.filelist.append([filename, filedate, filesize]) except Exception as e: @@ -125,3 +135,4 @@ def process_query_results(results): return info_ob + |