diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/gemma_mapping.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py index efd8bba8..623ab87f 100644 --- a/wqflask/wqflask/marker_regression/gemma_mapping.py +++ b/wqflask/wqflask/marker_regression/gemma_mapping.py @@ -129,7 +129,7 @@ def run_gemma(this_trait, this_dataset, samples, vals, covariates, use_loco, def gen_pheno_txt_file(this_dataset, genofile_name, vals): """Generates phenotype file for GEMMA""" - filename = "PHENO_" + generate_hash_of_string(this_dataset.name + str(vals)) + filename = "PHENO_" + generate_hash_of_string(this_dataset.name + str(vals)).replace("/", "_") with open(f"{TEMPDIR}/gn2/{filename}.txt", "w") as outfile: for value in vals: @@ -169,7 +169,7 @@ def gen_covariates_file(this_dataset, covariates, samples): this_covariate_data.append("-9") covariate_data_object.append(this_covariate_data) - filename = "COVAR_" + generate_hash_of_string(this_dataset.name + str(covariate_data_object)) + filename = "COVAR_" + generate_hash_of_string(this_dataset.name + str(covariate_data_object)).replace("/", "_") with open((f"{flat_files('mapping')}/" f"{filename}.txt"), |