diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/show_trait/SampleList.py | 13 |
1 files changed, 5 insertions, 8 deletions
diff --git a/wqflask/wqflask/show_trait/SampleList.py b/wqflask/wqflask/show_trait/SampleList.py index 9e5be0e8..356db7bc 100644 --- a/wqflask/wqflask/show_trait/SampleList.py +++ b/wqflask/wqflask/show_trait/SampleList.py @@ -40,17 +40,16 @@ class SampleList(object): for counter, sample_name in enumerate(sample_names, 1): sample_name = sample_name.replace("_2nd_", "") - if type(self.this_trait) is list: #ZS: self.this_trait will be a list if it is a Temp trait + if type(self.this_trait) is list: # ZS: self.this_trait will be a list if it is a Temp trait if counter <= len(self.this_trait) and str(self.this_trait[counter-1]).upper() != 'X': sample = webqtlCaseData.webqtlCaseData(name=sample_name, value=float(self.this_trait[counter-1])) else: sample = webqtlCaseData.webqtlCaseData(name=sample_name) else: - #ZS - If there's no value for the sample/strain, create the sample object (so samples with no value are still displayed in the table) + # ZS - If there's no value for the sample/strain, create the sample object (so samples with no value are still displayed in the table) try: sample = self.this_trait.data[sample_name] except KeyError: - #logger.debug("No sample %s, let's create it now" % sample_name) sample = webqtlCaseData.webqtlCaseData(name=sample_name) sample.extra_info = {} @@ -60,10 +59,9 @@ class SampleList(object): sample.this_id = str(counter) - #### For extra attribute columns; currently only used by several datasets - Zach + # ZS: For extra attribute columns; currently only used by several datasets if self.sample_attribute_values: sample.extra_attributes = self.sample_attribute_values.get(sample_name, {}) - #logger.debug("sample.extra_attributes is", pf(sample.extra_attributes)) self.sample_list.append(sample) @@ -100,7 +98,6 @@ class SampleList(object): self.attributes = {} for attr, values in itertools.groupby(results.fetchall(), lambda row: (row.Id, row.Name)): key, name = attr - #logger.debug("radish: %s - %s" % (key, name)) self.attributes[key] = Bunch() self.attributes[key].name = name self.attributes[key].distinct_values = [item.Value for item in values] @@ -137,8 +134,8 @@ class SampleList(object): for item in items: attribute_value = item.Value - #ZS: If it's an int, turn it into one for sorting - #(for example, 101 would be lower than 80 if they're strings instead of ints) + # ZS: If it's an int, turn it into one for sorting + # (for example, 101 would be lower than 80 if they're strings instead of ints) try: attribute_value = int(attribute_value) except ValueError: |