diff options
Diffstat (limited to 'wqflask')
12 files changed, 534 insertions, 817 deletions
diff --git a/wqflask/wqflask/static/new/css/bar_chart.css b/wqflask/wqflask/static/new/css/bar_chart.css index 0dda47c4..4da090b9 100755 --- a/wqflask/wqflask/static/new/css/bar_chart.css +++ b/wqflask/wqflask/static/new/css/bar_chart.css @@ -13,7 +13,11 @@ #legend-left, #legend-right {
font-size: 20px;
}
-/*
-.x.axis path {
+
+.nvd3 .nv-group {
+ fill-opacity: .9 !important;
+}
+
+.nvtooltip table td.legend-color-guide div {
display: none;
-}*/
\ No newline at end of file +}
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/bar_chart.coffee b/wqflask/wqflask/static/new/javascript/bar_chart.coffee index 7a2b38f3..6ae14e0f 100755 --- a/wqflask/wqflask/static/new/javascript/bar_chart.coffee +++ b/wqflask/wqflask/static/new/javascript/bar_chart.coffee @@ -1,135 +1,61 @@ root = exports ? this class Bar_Chart - constructor: (@sample_list) -> - @sort_by = "name" - @get_samples() - console.log("sample names:", @sample_names) - if @sample_attr_vals.length > 0 - @get_distinct_attr_vals() - @get_attr_color_dict(@distinct_attr_vals) - - #Used to calculate the bottom margin so sample names aren't cut off - longest_sample_name = d3.max(sample.name.length for sample in @sample_list) - - @margin = {top: 20, right: 20, bottom: longest_sample_name * 7, left: 40} - @plot_width = @sample_vals.length * 20 - @plot_height = 500 - @margin.top - @margin.bottom - - @x_buffer = @plot_width/20 - @y_buffer = @plot_height/20 - - @y_min = d3.min(@sample_vals) - @y_max = d3.max(@sample_vals) * 1.1 - - @svg = @create_svg() - - @plot_height -= @y_buffer - @create_scales(@sample_names) - @create_graph() - - d3.select("#color_attribute").on("change", => - @attribute = $("#color_attribute").val() + constructor: (sample_lists) -> + @sample_lists = {} + l1 = @sample_lists['samples_primary'] = sample_lists[0] or [] + l2 = @sample_lists['samples_other'] = sample_lists[1] or [] + + l1_names = (x.name for x in l1) + l3 = l1.concat((x for x in l2 when x.name not in l1_names)) + @sample_lists['samples_all'] = l3 + longest_sample_name_len = d3.max(sample.name.length for sample in l3) + @margin = { + top: 20, + right: 20, + bottom: longest_sample_name_len * 6, + left: 40 + } + + @attributes = (key for key of sample_lists[0][0]["extra_attributes"]) + @sample_attr_vals = (@extra(s) for s in @sample_lists['samples_all']\ + when s.value != null) + @get_distinct_attr_vals() + @get_attr_color_dict(@distinct_attr_vals) + @attribute_name = "None" - console.log("attr_color_dict:", @attr_color_dict) + @sort_by = "name" + @chart = null - @svg.selectAll(".bar") - .data(if @sort_by == "name" then @samples else @sorted_samples()) - .transition() - .duration(1000) - .style("fill", (d) => - if @attribute == "None" - return "steelblue" - else - return @attr_color_dict[@attribute][d[2][@attribute]] - ) - .select("title") - .text((d) => - return d[1] - ) + @select_attribute_box = $ "#color_attribute" - $(".legend").remove() - if @attribute == "None" or @is_discrete[@attribute] - $("#legend-left,#legend-right,#legend-colors").empty() - if @attribute != "None" - @add_legend(@attribute, @distinct_attr_vals[@attribute]) - else - @draw_legend() + d3.select("#color_attribute").on("change", => + @attribute_name = @select_attribute_box.val() + @rebuild_bar_graph() ) $(".sort_by_value").on("click", => console.log("sorting by value") @sort_by = "value" - if @attributes.length > 0 - @attribute = $("#color_attribute").val() - #sortItems = (a, b) -> - # return a[1] - b[1] - @rebuild_bar_graph(@sorted_samples()) - #@svg.selectAll(".bar") - # .data(@sorted_samples()) - # .transition() - # .duration(1000) - # .attr("y", (d) => - # return @y_scale(d[1]) - # ) - # .attr("height", (d) => - # return @plot_height - @y_scale(d[1]) - # ) - # .select("title") - # .text((d) => - # return d[1] - # ) - # #.style("fill", (d) => - # # if @attributes.length > 0 - # # return @attr_color_dict[attribute][d[2][attribute]] - # # else - # # return "steelblue" - # #) - #sorted_sample_names = (sample[0] for sample in @sorted_samples()) - #x_scale = d3.scale.ordinal() - # .domain(sorted_sample_names) - # .rangeBands([0, @plot_width], .1) - #$('.x.axis').remove() - #@add_x_axis(x_scale) + @rebuild_bar_graph() ) - + $(".sort_by_name").on("click", => console.log("sorting by name") @sort_by = "name" - if @attributes.length > 0 - @attribute = $("#color_attribute").val() - @rebuild_bar_graph(@samples) - #@svg.selectAll(".bar") - # .data(@samples) - # .transition() - # .duration(1000) - # .attr("y", (d) => - # return @y_scale(d[1]) - # ) - # .attr("height", (d) => - # return @plot_height - @y_scale(d[1]) - # ) - # .select("title") - # .text((d) => - # return d[1] - # ) - # .style("fill", (d) => - # if @attributes.length > 0 - # return @attr_color_dict[attribute][d[2][attribute]] - # else - # return "steelblue" - # ) - #x_scale = d3.scale.ordinal() - # .domain(@sample_names) - # .rangeBands([0, @plot_width], .1) - #$('.x.axis').remove() - #@add_x_axis(x_scale) + @rebuild_bar_graph() ) d3.select("#color_by_trait").on("click", => @open_trait_selection() ) + value: (sample) -> + @value_dict[sample.name].value + + variance: (sample) -> + @value_dict[sample.name].variance + extra: (sample) -> attr_vals = {} for attribute in @attributes @@ -137,68 +63,84 @@ class Bar_Chart attr_vals # takes a dict: name -> value and rebuilds the graph - redraw: (samples_dict) -> - curr = (x for x in @sample_list when\ - x.name of samples_dict and samples_dict[x.name] != null) - @sample_names = (x.name for x in curr) - @sample_vals = (samples_dict[x.name] for x in curr) - @sample_attr_vals = (@extra(x) for x in curr) - @samples = _.zip(@sample_names, @sample_vals, @sample_attr_vals) - - @rebuild_bar_graph(if @sort_by == 'name' then @samples else @sorted_samples()) - - rebuild_bar_graph: (samples) -> - console.log("samples:", samples) - @attribute = $("#color_attribute").val() - - # recompute sizes - vals = (x[1] for x in samples) - @y_min = d3.min(vals) - @y_max = d3.max(vals) * 1.1 - @plot_width = samples.length * 20 - - $("svg.bar_chart").attr("width", @plot_width + @margin.left + @margin.right) - - names = (x[0] for x in samples) - @create_scales(names) - $('.bar_chart').find('.x.axis').remove() - $('.bar_chart').find('.y.axis').remove() - @add_x_axis() - @add_y_axis() - - bars = @update_bars(samples) - - bars.transition() - .duration(1000) - .style("fill", (d) => - if @attributes.length == 0 and @trait_color_dict? - console.log("SAMPLE:", d[0]) - console.log("CHECKING:", @trait_color_dict[d[0]]) - #return "steelblue" - return @trait_color_dict[d[0]] - else if @attributes.length > 0 and @attribute != "None" - console.log("@attribute:", @attribute) - console.log("d[2]", d[2]) - console.log("the_color:", @attr_color_dict[@attribute][d[2][@attribute]]) - return @attr_color_dict[@attribute][d[2][@attribute]] - else - return "steelblue" - ) - .attr("x", (d) => return @x_scale(d[0])) - .attr("y", (d) => - return @y_scale(d[1]) + redraw: (samples_dict, selected_group) -> + @value_dict = samples_dict[selected_group] + @raw_data = (x for x in @sample_lists[selected_group] when\ + x.name of @value_dict and @value(x) != null) + @rebuild_bar_graph() + + rebuild_bar_graph: -> + raw_data = @raw_data.slice() + if @sort_by == 'value' + raw_data = raw_data.sort((x, y) => @value(x) - @value(y)) + console.log("raw_data: ", raw_data) + + h = 600 + container = $("#bar_chart_container") + container.height(h + @margin.top + @margin.bottom) + if @chart is null + @chart = nv.models.multiBarChart() + .height(h) + .errorBarColor(=> 'red') + .reduceXTicks(false) + .staggerLabels(false) + .showControls(false) + .showLegend(false) + + # show value, sd, and attributes in tooltip + @chart.multibar.dispatch.on('elementMouseover.tooltip', + (evt) => + evt.value = @chart.x()(evt.data); + evt['series'] = [{ + key: 'Value', + value: evt.data.y, + color: evt.color + }]; + if evt.data.yErr + evt['series'].push({key: 'SD', value: evt.data.yErr}) + if evt.data.attr + for k, v of evt.data.attr + evt['series'].push({key: k, value: v}) + @chart.tooltip.data(evt).hidden(false); ) - .attr("height", (d) => - return @plot_height - @y_scale(d[1]) - ) - .select("title") - .text((d) => - return d[1] + + @chart.tooltip.valueFormatter((d, i) -> d) + + nv.addGraph(() => + @remove_legend() + values = ({x: s.name, y: @value(s), yErr: @variance(s) or 0,\ + attr: s.extra_attributes}\ + for s in raw_data) + + if @attribute_name != "None" + @color_dict = @attr_color_dict[@attribute_name] + @chart.barColor((d) => @color_dict[d.attr[@attribute_name]]) + @add_legend() + else + @chart.barColor(=> 'steelblue') + + @chart.width(raw_data.length * 20) + @chart.yDomain([0.9 * _.min((d.y - 1.5 * d.yErr for d in values)), + 1.05 * _.max((d.y + 1.5 * d.yErr for d in values))]) + console.log("values: ", values) + d3.select("#bar_chart_container svg") + .datum([{values: values}]) + .style('width', raw_data.length * 20 + 'px') + .transition().duration(1000) + .call(@chart) + + d3.select("#bar_chart_container .nv-x") + .selectAll('.tick text') + .style("font-size", "12px") + .style("text-anchor", "end") + .attr("dx", "-.8em") + .attr("dy", "-.3em") + .attr("transform", (d) => + return "rotate(-90)" + ) + + return @chart ) - #.style("fill", (d) => - # return @trait_color_dict[d[0]] - # #return @attr_color_dict["collection_trait"][trimmed_samples[d[0]]] - #) get_attr_color_dict: (vals) -> @attr_color_dict = {} @@ -237,71 +179,6 @@ class Bar_Chart @is_discrete[key] = discrete @minimum_values[key] = @min_val @maximum_values[key] = @max_val - - - - draw_legend: () -> - $('#legend-left').html(@minimum_values[@attribute]) - $('#legend-right').html(@maximum_values[@attribute]) - svg_html = '<svg height="15" width="120"> \ - <rect x="0" width="20" height="15" style="fill: rgb(0, 0, 0);"></rect> \ - <rect x="20" width="20" height="15" style="fill: rgb(50, 0, 0);"></rect> \ - <rect x="40" width="20" height="15" style="fill: rgb(100, 0, 0);"></rect> \ - <rect x="60" width="20" height="15" style="fill: rgb(150, 0, 0);"></rect> \ - <rect x="80" width="20" height="15" style="fill: rgb(200, 0, 0);"></rect> \ - <rect x="100" width="20" height="15" style="fill: rgb(255, 0, 0);"></rect> \ - </svg>' - console.log("svg_html:", svg_html) - $('#legend-colors').html(svg_html) - - get_trait_color_dict: (samples, vals) -> - @trait_color_dict = {} - console.log("vals:", vals) - for own key, distinct_vals of vals - this_color_dict = {} - @min_val = d3.min(distinct_vals) - @max_val = d3.max(distinct_vals) - if distinct_vals.length < 10 - color = d3.scale.category10() - for value, i in distinct_vals - this_color_dict[value] = color(i) - else - console.log("distinct_values:", distinct_vals) - #Check whether all values are numbers, and if they are get a corresponding - #color gradient - if _.every(distinct_vals, (d) => - if isNaN(d) - return false - else - return true - ) - color_range = d3.scale.linear() - .domain([d3.min(distinct_vals), - d3.max(distinct_vals)]) - .range([0,255]) - for value, i in distinct_vals - console.log("color_range(value):", parseInt(color_range(value))) - this_color_dict[value] = d3.rgb(parseInt(color_range(value)),0, 0) - for own sample, value of samples - @trait_color_dict[sample] = this_color_dict[value] - - convert_into_colors: (values) -> - color_range = d3.scale.linear() - .domain([d3.min(values), - d3.max(values)]) - .range([0,255]) - for value, i in values - console.log("color_range(value):", color_range(parseInt(value))) - this_color_dict[value] = d3.rgb(color_range(parseInt(value)),0, 0) - #this_color_dict[value] = d3.rgb("lightblue").darker(color_range(parseInt(value))) - - get_samples: () -> - @sample_names = (sample.name for sample in @sample_list when sample.value != null) - @sample_vals = (sample.value for sample in @sample_list when sample.value != null) - @attributes = (key for key of @sample_list[0]["extra_attributes"]) - console.log("attributes:", @attributes) - @sample_attr_vals = (@extra(sample) for sample in @sample_list when sample.value != null) - @samples = _.zip(@sample_names, @sample_vals, @sample_attr_vals) get_distinct_attr_vals: () -> # FIXME: this has quadratic behaviour, may cause issues with many samples and continuous attributes @@ -313,111 +190,41 @@ class Bar_Chart if sample[attribute] not in @distinct_attr_vals[attribute] @distinct_attr_vals[attribute].push(sample[attribute]) #console.log("distinct_attr_vals:", @distinct_attr_vals) - - create_svg: () -> - svg = d3.select("#bar_chart") - .append("svg") - .attr("class", "bar_chart") - .attr("width", @plot_width + @margin.left + @margin.right) - .attr("height", @plot_height + @margin.top + @margin.bottom) - .append("g") - .attr("transform", "translate(" + @margin.left + "," + @margin.top + ")") - - return svg - - create_scales: (sample_names) -> - @x_scale = d3.scale.ordinal() - .domain(sample_names) - .rangeRoundBands([0, @plot_width], 0.1, 0) - - @y_scale = d3.scale.linear() - .domain([@y_min * 0.75, @y_max]) - .range([@plot_height, @y_buffer]) - - create_graph: () -> - - #@add_border() - @add_x_axis() - @add_y_axis() - - @update_bars(@samples) - - add_x_axis: (scale) -> - xAxis = d3.svg.axis() - .scale(@x_scale) - .orient("bottom"); - - @svg.append("g") - .attr("class", "x axis") - .attr("transform", "translate(0," + @plot_height + ")") - .call(xAxis) - .selectAll("text") - .style("text-anchor", "end") - .style("font-size", "12px") - .attr("dx", "-.8em") - .attr("dy", "-.3em") - .attr("transform", (d) => - return "rotate(-90)" - ) - add_y_axis: () -> - yAxis = d3.svg.axis() - .scale(@y_scale) - .orient("left") - .ticks(5) - - @svg.append("g") - .attr("class", "y axis") - .call(yAxis) - .append("text") - .attr("transform", "rotate(-90)") - .attr("y", 6) - .attr("dy", ".71em") - .style("text-anchor", "end") - - update_bars: (samples) -> - bars = @svg.selectAll(".bar").data(samples, (d) => return d[0]) - bars.enter().append("rect") - .style("fill", "steelblue") - .attr("class", "bar") - .attr("x", (d) => - return @x_scale(d[0]) - ) - .attr("width", @x_scale.rangeBand()) - .attr("y", (d) => - return @y_scale(d[1]) - ) - .attr("height", (d) => - return @plot_height - @y_scale(d[1]) - ) - .append("svg:title") - .text((d) => - return d[1] - ) - bars.exit().remove() - return bars - - sorted_samples: () -> - #if @sample_attr_vals.length > 0 - sample_list = _.zip(@sample_names, @sample_vals, @sample_attr_vals) - #else - # sample_list = _.zip(@sample_names, @sample_vals) - sorted = _.sortBy(sample_list, (sample) => - return sample[1] - ) - console.log("sorted:", sorted) - return sorted + add_legend: => + if @is_discrete[@attribute_name] + @add_legend_discrete() + else + @add_legend_continuous() - add_legend: (attribute, distinct_vals) -> + remove_legend: => + $(".legend").remove() + $("#legend-left,#legend-right,#legend-colors").empty() + + add_legend_continuous: => + $('#legend-left').html(@minimum_values[@attribute_name]) + $('#legend-right').html(@maximum_values[@attribute_name]) + svg_html = '<svg height="15" width="120"> \ + <rect x="0" width="20" height="15" style="fill: rgb(0, 0, 0);"></rect> \ + <rect x="20" width="20" height="15" style="fill: rgb(50, 0, 0);"></rect> \ + <rect x="40" width="20" height="15" style="fill: rgb(100, 0, 0);"></rect> \ + <rect x="60" width="20" height="15" style="fill: rgb(150, 0, 0);"></rect> \ + <rect x="80" width="20" height="15" style="fill: rgb(200, 0, 0);"></rect> \ + <rect x="100" width="20" height="15" style="fill: rgb(255, 0, 0);"></rect> \ + </svg>' + console.log("svg_html:", svg_html) + $('#legend-colors').html(svg_html) + + add_legend_discrete: => legend_span = d3.select('#bar_chart_legend') .append('div').style('word-wrap', 'break-word') .attr('class', 'legend').selectAll('span') - .data(distinct_vals) + .data(@distinct_attr_vals[@attribute_name]) .enter().append('span').style({'word-wrap': 'normal', 'display': 'inline-block'}) legend_span.append('span') .style("background-color", (d) => - return @attr_color_dict[attribute][d] + return @attr_color_dict[@attribute_name][d] ) .style({'display': 'inline-block', 'width': '15px', 'height': '15px',\ 'margin': '0px 5px 0px 15px'}) @@ -436,7 +243,7 @@ class Bar_Chart # console.log("contents:", $(element).contents()) # $(element).contents().unwrap() ) - + color_by_trait: (trait_sample_data) -> console.log("BXD1:", trait_sample_data["BXD1"]) console.log("trait_sample_data:", trait_sample_data) @@ -447,34 +254,7 @@ class Bar_Chart @get_trait_color_dict(trimmed_samples, distinct_values) console.log("TRAIT_COLOR_DICT:", @trait_color_dict) console.log("SAMPLES:", @samples) - if @sort_by = "value" - @svg.selectAll(".bar") - .data(@samples) - .transition() - .duration(1000) - .style("fill", (d) => - console.log("this color:", @trait_color_dict[d[0]]) - return @trait_color_dict[d[0]] - ) - .select("title") - .text((d) => - return d[1] - ) - @draw_legend() - else - @svg.selectAll(".bar") - .data(@sorted_samples()) - .transition() - .duration(1000) - .style("fill", (d) => - console.log("this color:", @trait_color_dict[d[0]]) - return @trait_color_dict[d[0]] - ) - .select("title") - .text((d) => - return d[1] - ) - @draw_legend() + # TODO trim_values: (trait_sample_data) -> trimmed_samples = {} diff --git a/wqflask/wqflask/static/new/javascript/bar_chart.js b/wqflask/wqflask/static/new/javascript/bar_chart.js index cc21550e..f288123e 100755 --- a/wqflask/wqflask/static/new/javascript/bar_chart.js +++ b/wqflask/wqflask/static/new/javascript/bar_chart.js @@ -1,90 +1,102 @@ // Generated by CoffeeScript 1.9.2 (function() { var Bar_Chart, root, - hasProp = {}.hasOwnProperty, - indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; }; + bind = function(fn, me){ return function(){ return fn.apply(me, arguments); }; }, + indexOf = [].indexOf || function(item) { for (var i = 0, l = this.length; i < l; i++) { if (i in this && this[i] === item) return i; } return -1; }, + hasProp = {}.hasOwnProperty; root = typeof exports !== "undefined" && exports !== null ? exports : this; Bar_Chart = (function() { - function Bar_Chart(sample_list1) { - var longest_sample_name, sample; - this.sample_list = sample_list1; - this.sort_by = "name"; - this.get_samples(); - console.log("sample names:", this.sample_names); - if (this.sample_attr_vals.length > 0) { - this.get_distinct_attr_vals(); - this.get_attr_color_dict(this.distinct_attr_vals); - } - longest_sample_name = d3.max((function() { + function Bar_Chart(sample_lists) { + this.add_legend_discrete = bind(this.add_legend_discrete, this); + this.add_legend_continuous = bind(this.add_legend_continuous, this); + this.remove_legend = bind(this.remove_legend, this); + this.add_legend = bind(this.add_legend, this); + var key, l1, l1_names, l2, l3, longest_sample_name_len, s, sample, x; + this.sample_lists = {}; + l1 = this.sample_lists['samples_primary'] = sample_lists[0] || []; + l2 = this.sample_lists['samples_other'] = sample_lists[1] || []; + l1_names = (function() { + var j, len, results; + results = []; + for (j = 0, len = l1.length; j < len; j++) { + x = l1[j]; + results.push(x.name); + } + return results; + })(); + l3 = l1.concat((function() { var j, len, ref, results; - ref = this.sample_list; results = []; - for (j = 0, len = ref.length; j < len; j++) { - sample = ref[j]; + for (j = 0, len = l2.length; j < len; j++) { + x = l2[j]; + if (ref = x.name, indexOf.call(l1_names, ref) < 0) { + results.push(x); + } + } + return results; + })()); + this.sample_lists['samples_all'] = l3; + longest_sample_name_len = d3.max((function() { + var j, len, results; + results = []; + for (j = 0, len = l3.length; j < len; j++) { + sample = l3[j]; results.push(sample.name.length); } return results; - }).call(this)); + })()); this.margin = { top: 20, right: 20, - bottom: longest_sample_name * 7, + bottom: longest_sample_name_len * 6, left: 40 }; - this.plot_width = this.sample_vals.length * 20; - this.plot_height = 500 - this.margin.top - this.margin.bottom; - this.x_buffer = this.plot_width / 20; - this.y_buffer = this.plot_height / 20; - this.y_min = d3.min(this.sample_vals); - this.y_max = d3.max(this.sample_vals) * 1.1; - this.svg = this.create_svg(); - this.plot_height -= this.y_buffer; - this.create_scales(this.sample_names); - this.create_graph(); + this.attributes = (function() { + var results; + results = []; + for (key in sample_lists[0][0]["extra_attributes"]) { + results.push(key); + } + return results; + })(); + this.sample_attr_vals = (function() { + var j, len, ref, results; + ref = this.sample_lists['samples_all']; + results = []; + for (j = 0, len = ref.length; j < len; j++) { + s = ref[j]; + if (s.value !== null) { + results.push(this.extra(s)); + } + } + return results; + }).call(this); + this.get_distinct_attr_vals(); + this.get_attr_color_dict(this.distinct_attr_vals); + this.attribute_name = "None"; + this.sort_by = "name"; + this.chart = null; + this.select_attribute_box = $("#color_attribute"); d3.select("#color_attribute").on("change", (function(_this) { return function() { - _this.attribute = $("#color_attribute").val(); - console.log("attr_color_dict:", _this.attr_color_dict); - _this.svg.selectAll(".bar").data(_this.sort_by === "name" ? _this.samples : _this.sorted_samples()).transition().duration(1000).style("fill", function(d) { - if (_this.attribute === "None") { - return "steelblue"; - } else { - return _this.attr_color_dict[_this.attribute][d[2][_this.attribute]]; - } - }).select("title").text(function(d) { - return d[1]; - }); - $(".legend").remove(); - if (_this.attribute === "None" || _this.is_discrete[_this.attribute]) { - $("#legend-left,#legend-right,#legend-colors").empty(); - if (_this.attribute !== "None") { - return _this.add_legend(_this.attribute, _this.distinct_attr_vals[_this.attribute]); - } - } else { - return _this.draw_legend(); - } + _this.attribute_name = _this.select_attribute_box.val(); + return _this.rebuild_bar_graph(); }; })(this)); $(".sort_by_value").on("click", (function(_this) { return function() { console.log("sorting by value"); _this.sort_by = "value"; - if (_this.attributes.length > 0) { - _this.attribute = $("#color_attribute").val(); - } - return _this.rebuild_bar_graph(_this.sorted_samples()); + return _this.rebuild_bar_graph(); }; })(this)); $(".sort_by_name").on("click", (function(_this) { return function() { console.log("sorting by name"); _this.sort_by = "name"; - if (_this.attributes.length > 0) { - _this.attribute = $("#color_attribute").val(); - } - return _this.rebuild_bar_graph(_this.samples); + return _this.rebuild_bar_graph(); }; })(this)); d3.select("#color_by_trait").on("click", (function(_this) { @@ -94,6 +106,14 @@ })(this)); } + Bar_Chart.prototype.value = function(sample) { + return this.value_dict[sample.name].value; + }; + + Bar_Chart.prototype.variance = function(sample) { + return this.value_dict[sample.name].variance; + }; + Bar_Chart.prototype.extra = function(sample) { var attr_vals, attribute, j, len, ref; attr_vals = {}; @@ -105,119 +125,143 @@ return attr_vals; }; - Bar_Chart.prototype.redraw = function(samples_dict) { - var curr, x; - curr = (function() { + Bar_Chart.prototype.redraw = function(samples_dict, selected_group) { + var x; + this.value_dict = samples_dict[selected_group]; + this.raw_data = (function() { var j, len, ref, results; - ref = this.sample_list; + ref = this.sample_lists[selected_group]; results = []; for (j = 0, len = ref.length; j < len; j++) { x = ref[j]; - if (x.name in samples_dict && samples_dict[x.name] !== null) { + if (x.name in this.value_dict && this.value(x) !== null) { results.push(x); } } return results; }).call(this); - this.sample_names = (function() { - var j, len, results; - results = []; - for (j = 0, len = curr.length; j < len; j++) { - x = curr[j]; - results.push(x.name); - } - return results; - })(); - this.sample_vals = (function() { - var j, len, results; - results = []; - for (j = 0, len = curr.length; j < len; j++) { - x = curr[j]; - results.push(samples_dict[x.name]); - } - return results; - })(); - this.sample_attr_vals = (function() { - var j, len, results; - results = []; - for (j = 0, len = curr.length; j < len; j++) { - x = curr[j]; - results.push(this.extra(x)); - } - return results; - }).call(this); - this.samples = _.zip(this.sample_names, this.sample_vals, this.sample_attr_vals); - return this.rebuild_bar_graph(this.sort_by === 'name' ? this.samples : this.sorted_samples()); + return this.rebuild_bar_graph(); }; - Bar_Chart.prototype.rebuild_bar_graph = function(samples) { - var bars, names, vals, x; - console.log("samples:", samples); - this.attribute = $("#color_attribute").val(); - vals = (function() { - var j, len, results; - results = []; - for (j = 0, len = samples.length; j < len; j++) { - x = samples[j]; - results.push(x[1]); - } - return results; - })(); - this.y_min = d3.min(vals); - this.y_max = d3.max(vals) * 1.1; - this.plot_width = samples.length * 20; - $("svg.bar_chart").attr("width", this.plot_width + this.margin.left + this.margin.right); - names = (function() { - var j, len, results; - results = []; - for (j = 0, len = samples.length; j < len; j++) { - x = samples[j]; - results.push(x[0]); - } - return results; - })(); - this.create_scales(names); - $('.bar_chart').find('.x.axis').remove(); - $('.bar_chart').find('.y.axis').remove(); - this.add_x_axis(); - this.add_y_axis(); - bars = this.update_bars(samples); - return bars.transition().duration(1000).style("fill", (function(_this) { - return function(d) { - if (_this.attributes.length === 0 && (_this.trait_color_dict != null)) { - console.log("SAMPLE:", d[0]); - console.log("CHECKING:", _this.trait_color_dict[d[0]]); - return _this.trait_color_dict[d[0]]; - } else if (_this.attributes.length > 0 && _this.attribute !== "None") { - console.log("@attribute:", _this.attribute); - console.log("d[2]", d[2]); - console.log("the_color:", _this.attr_color_dict[_this.attribute][d[2][_this.attribute]]); - return _this.attr_color_dict[_this.attribute][d[2][_this.attribute]]; + Bar_Chart.prototype.rebuild_bar_graph = function() { + var container, h, raw_data; + raw_data = this.raw_data.slice(); + if (this.sort_by === 'value') { + raw_data = raw_data.sort((function(_this) { + return function(x, y) { + return _this.value(x) - _this.value(y); + }; + })(this)); + } + console.log("raw_data: ", raw_data); + h = 600; + container = $("#bar_chart_container"); + container.height(h + this.margin.top + this.margin.bottom); + if (this.chart === null) { + this.chart = nv.models.multiBarChart().height(h).errorBarColor((function(_this) { + return function() { + return 'red'; + }; + })(this)).reduceXTicks(false).staggerLabels(false).showControls(false).showLegend(false); + this.chart.multibar.dispatch.on('elementMouseover.tooltip', (function(_this) { + return function(evt) { + var k, ref, v; + evt.value = _this.chart.x()(evt.data); + evt['series'] = [ + { + key: 'Value', + value: evt.data.y, + color: evt.color + } + ]; + if (evt.data.yErr) { + evt['series'].push({ + key: 'SD', + value: evt.data.yErr + }); + } + if (evt.data.attr) { + ref = evt.data.attr; + for (k in ref) { + v = ref[k]; + evt['series'].push({ + key: k, + value: v + }); + } + } + return _this.chart.tooltip.data(evt).hidden(false); + }; + })(this)); + this.chart.tooltip.valueFormatter(function(d, i) { + return d; + }); + } + return nv.addGraph((function(_this) { + return function() { + var d, s, values; + _this.remove_legend(); + values = (function() { + var j, len, results; + results = []; + for (j = 0, len = raw_data.length; j < len; j++) { + s = raw_data[j]; + results.push({ + x: s.name, + y: this.value(s), + yErr: this.variance(s) || 0, + attr: s.extra_attributes + }); + } + return results; + }).call(_this); + if (_this.attribute_name !== "None") { + _this.color_dict = _this.attr_color_dict[_this.attribute_name]; + _this.chart.barColor(function(d) { + return _this.color_dict[d.attr[_this.attribute_name]]; + }); + _this.add_legend(); } else { - return "steelblue"; + _this.chart.barColor(function() { + return 'steelblue'; + }); } - }; - })(this)).attr("x", (function(_this) { - return function(d) { - return _this.x_scale(d[0]); - }; - })(this)).attr("y", (function(_this) { - return function(d) { - return _this.y_scale(d[1]); - }; - })(this)).attr("height", (function(_this) { - return function(d) { - return _this.plot_height - _this.y_scale(d[1]); - }; - })(this)).select("title").text((function(_this) { - return function(d) { - return d[1]; + _this.chart.width(raw_data.length * 20); + _this.chart.yDomain([ + 0.9 * _.min((function() { + var j, len, results; + results = []; + for (j = 0, len = values.length; j < len; j++) { + d = values[j]; + results.push(d.y - 1.5 * d.yErr); + } + return results; + })()), 1.05 * _.max((function() { + var j, len, results; + results = []; + for (j = 0, len = values.length; j < len; j++) { + d = values[j]; + results.push(d.y + 1.5 * d.yErr); + } + return results; + })()) + ]); + console.log("values: ", values); + d3.select("#bar_chart_container svg").datum([ + { + values: values + } + ]).style('width', raw_data.length * 20 + 'px').transition().duration(1000).call(_this.chart); + d3.select("#bar_chart_container .nv-x").selectAll('.tick text').style("font-size", "12px").style("text-anchor", "end").attr("dx", "-.8em").attr("dy", "-.3em").attr("transform", function(d) { + return "rotate(-90)"; + }); + return _this.chart; }; })(this)); }; Bar_Chart.prototype.get_attr_color_dict = function(vals) { - var color, color_range, discrete, distinct_vals, i, j, k, key, len, len1, results, this_color_dict, value; + var color, color_range, discrete, distinct_vals, i, j, key, l, len, len1, results, this_color_dict, value; this.attr_color_dict = {}; this.is_discrete = {}; this.minimum_values = {}; @@ -249,7 +293,7 @@ }; })(this))) { color_range = d3.scale.linear().domain([this.min_val, this.max_val]).range([0, 255]); - for (i = k = 0, len1 = distinct_vals.length; k < len1; i = ++k) { + for (i = l = 0, len1 = distinct_vals.length; l < len1; i = ++l) { value = distinct_vals[i]; console.log("color_range(value):", parseInt(color_range(value))); this_color_dict[value] = d3.rgb(parseInt(color_range(value)), 0, 0); @@ -264,122 +308,6 @@ return results; }; - Bar_Chart.prototype.draw_legend = function() { - var svg_html; - $('#legend-left').html(this.minimum_values[this.attribute]); - $('#legend-right').html(this.maximum_values[this.attribute]); - svg_html = '<svg height="15" width="120"> <rect x="0" width="20" height="15" style="fill: rgb(0, 0, 0);"></rect> <rect x="20" width="20" height="15" style="fill: rgb(50, 0, 0);"></rect> <rect x="40" width="20" height="15" style="fill: rgb(100, 0, 0);"></rect> <rect x="60" width="20" height="15" style="fill: rgb(150, 0, 0);"></rect> <rect x="80" width="20" height="15" style="fill: rgb(200, 0, 0);"></rect> <rect x="100" width="20" height="15" style="fill: rgb(255, 0, 0);"></rect> </svg>'; - console.log("svg_html:", svg_html); - return $('#legend-colors').html(svg_html); - }; - - Bar_Chart.prototype.get_trait_color_dict = function(samples, vals) { - var color, color_range, distinct_vals, i, j, k, key, len, len1, results, sample, this_color_dict, value; - this.trait_color_dict = {}; - console.log("vals:", vals); - for (key in vals) { - if (!hasProp.call(vals, key)) continue; - distinct_vals = vals[key]; - this_color_dict = {}; - this.min_val = d3.min(distinct_vals); - this.max_val = d3.max(distinct_vals); - if (distinct_vals.length < 10) { - color = d3.scale.category10(); - for (i = j = 0, len = distinct_vals.length; j < len; i = ++j) { - value = distinct_vals[i]; - this_color_dict[value] = color(i); - } - } else { - console.log("distinct_values:", distinct_vals); - if (_.every(distinct_vals, (function(_this) { - return function(d) { - if (isNaN(d)) { - return false; - } else { - return true; - } - }; - })(this))) { - color_range = d3.scale.linear().domain([d3.min(distinct_vals), d3.max(distinct_vals)]).range([0, 255]); - for (i = k = 0, len1 = distinct_vals.length; k < len1; i = ++k) { - value = distinct_vals[i]; - console.log("color_range(value):", parseInt(color_range(value))); - this_color_dict[value] = d3.rgb(parseInt(color_range(value)), 0, 0); - } - } - } - } - results = []; - for (sample in samples) { - if (!hasProp.call(samples, sample)) continue; - value = samples[sample]; - results.push(this.trait_color_dict[sample] = this_color_dict[value]); - } - return results; - }; - - Bar_Chart.prototype.convert_into_colors = function(values) { - var color_range, i, j, len, results, value; - color_range = d3.scale.linear().domain([d3.min(values), d3.max(values)]).range([0, 255]); - results = []; - for (i = j = 0, len = values.length; j < len; i = ++j) { - value = values[i]; - console.log("color_range(value):", color_range(parseInt(value))); - results.push(this_color_dict[value] = d3.rgb(color_range(parseInt(value)), 0, 0)); - } - return results; - }; - - Bar_Chart.prototype.get_samples = function() { - var key, sample; - this.sample_names = (function() { - var j, len, ref, results; - ref = this.sample_list; - results = []; - for (j = 0, len = ref.length; j < len; j++) { - sample = ref[j]; - if (sample.value !== null) { - results.push(sample.name); - } - } - return results; - }).call(this); - this.sample_vals = (function() { - var j, len, ref, results; - ref = this.sample_list; - results = []; - for (j = 0, len = ref.length; j < len; j++) { - sample = ref[j]; - if (sample.value !== null) { - results.push(sample.value); - } - } - return results; - }).call(this); - this.attributes = (function() { - var results; - results = []; - for (key in this.sample_list[0]["extra_attributes"]) { - results.push(key); - } - return results; - }).call(this); - console.log("attributes:", this.attributes); - this.sample_attr_vals = (function() { - var j, len, ref, results; - ref = this.sample_list; - results = []; - for (j = 0, len = ref.length; j < len; j++) { - sample = ref[j]; - if (sample.value !== null) { - results.push(this.extra(sample)); - } - } - return results; - }).call(this); - return this.samples = _.zip(this.sample_names, this.sample_vals, this.sample_attr_vals); - }; - Bar_Chart.prototype.get_distinct_attr_vals = function() { var attribute, j, len, ref, results, sample; this.distinct_attr_vals = {}; @@ -406,88 +334,37 @@ return results; }; - Bar_Chart.prototype.create_svg = function() { - var svg; - svg = d3.select("#bar_chart").append("svg").attr("class", "bar_chart").attr("width", this.plot_width + this.margin.left + this.margin.right).attr("height", this.plot_height + this.margin.top + this.margin.bottom).append("g").attr("transform", "translate(" + this.margin.left + "," + this.margin.top + ")"); - return svg; - }; - - Bar_Chart.prototype.create_scales = function(sample_names) { - this.x_scale = d3.scale.ordinal().domain(sample_names).rangeRoundBands([0, this.plot_width], 0.1, 0); - return this.y_scale = d3.scale.linear().domain([this.y_min * 0.75, this.y_max]).range([this.plot_height, this.y_buffer]); - }; - - Bar_Chart.prototype.create_graph = function() { - this.add_x_axis(); - this.add_y_axis(); - return this.update_bars(this.samples); - }; - - Bar_Chart.prototype.add_x_axis = function(scale) { - var xAxis; - xAxis = d3.svg.axis().scale(this.x_scale).orient("bottom"); - return this.svg.append("g").attr("class", "x axis").attr("transform", "translate(0," + this.plot_height + ")").call(xAxis).selectAll("text").style("text-anchor", "end").style("font-size", "12px").attr("dx", "-.8em").attr("dy", "-.3em").attr("transform", (function(_this) { - return function(d) { - return "rotate(-90)"; - }; - })(this)); + Bar_Chart.prototype.add_legend = function() { + if (this.is_discrete[this.attribute_name]) { + return this.add_legend_discrete(); + } else { + return this.add_legend_continuous(); + } }; - Bar_Chart.prototype.add_y_axis = function() { - var yAxis; - yAxis = d3.svg.axis().scale(this.y_scale).orient("left").ticks(5); - return this.svg.append("g").attr("class", "y axis").call(yAxis).append("text").attr("transform", "rotate(-90)").attr("y", 6).attr("dy", ".71em").style("text-anchor", "end"); + Bar_Chart.prototype.remove_legend = function() { + $(".legend").remove(); + return $("#legend-left,#legend-right,#legend-colors").empty(); }; - Bar_Chart.prototype.update_bars = function(samples) { - var bars; - bars = this.svg.selectAll(".bar").data(samples, (function(_this) { - return function(d) { - return d[0]; - }; - })(this)); - bars.enter().append("rect").style("fill", "steelblue").attr("class", "bar").attr("x", (function(_this) { - return function(d) { - return _this.x_scale(d[0]); - }; - })(this)).attr("width", this.x_scale.rangeBand()).attr("y", (function(_this) { - return function(d) { - return _this.y_scale(d[1]); - }; - })(this)).attr("height", (function(_this) { - return function(d) { - return _this.plot_height - _this.y_scale(d[1]); - }; - })(this)).append("svg:title").text((function(_this) { - return function(d) { - return d[1]; - }; - })(this)); - bars.exit().remove(); - return bars; - }; - - Bar_Chart.prototype.sorted_samples = function() { - var sample_list, sorted; - sample_list = _.zip(this.sample_names, this.sample_vals, this.sample_attr_vals); - sorted = _.sortBy(sample_list, (function(_this) { - return function(sample) { - return sample[1]; - }; - })(this)); - console.log("sorted:", sorted); - return sorted; + Bar_Chart.prototype.add_legend_continuous = function() { + var svg_html; + $('#legend-left').html(this.minimum_values[this.attribute_name]); + $('#legend-right').html(this.maximum_values[this.attribute_name]); + svg_html = '<svg height="15" width="120"> <rect x="0" width="20" height="15" style="fill: rgb(0, 0, 0);"></rect> <rect x="20" width="20" height="15" style="fill: rgb(50, 0, 0);"></rect> <rect x="40" width="20" height="15" style="fill: rgb(100, 0, 0);"></rect> <rect x="60" width="20" height="15" style="fill: rgb(150, 0, 0);"></rect> <rect x="80" width="20" height="15" style="fill: rgb(200, 0, 0);"></rect> <rect x="100" width="20" height="15" style="fill: rgb(255, 0, 0);"></rect> </svg>'; + console.log("svg_html:", svg_html); + return $('#legend-colors').html(svg_html); }; - Bar_Chart.prototype.add_legend = function(attribute, distinct_vals) { + Bar_Chart.prototype.add_legend_discrete = function() { var legend_span; - legend_span = d3.select('#bar_chart_legend').append('div').style('word-wrap', 'break-word').attr('class', 'legend').selectAll('span').data(distinct_vals).enter().append('span').style({ + legend_span = d3.select('#bar_chart_legend').append('div').style('word-wrap', 'break-word').attr('class', 'legend').selectAll('span').data(this.distinct_attr_vals[this.attribute_name]).enter().append('span').style({ 'word-wrap': 'normal', 'display': 'inline-block' }); legend_span.append('span').style("background-color", (function(_this) { return function(d) { - return _this.attr_color_dict[attribute][d]; + return _this.attr_color_dict[_this.attribute_name][d]; }; })(this)).style({ 'display': 'inline-block', @@ -523,32 +400,7 @@ distinct_values["collection_trait"] = this.get_distinct_values(trimmed_samples); this.get_trait_color_dict(trimmed_samples, distinct_values); console.log("TRAIT_COLOR_DICT:", this.trait_color_dict); - console.log("SAMPLES:", this.samples); - if (this.sort_by = "value") { - this.svg.selectAll(".bar").data(this.samples).transition().duration(1000).style("fill", (function(_this) { - return function(d) { - console.log("this color:", _this.trait_color_dict[d[0]]); - return _this.trait_color_dict[d[0]]; - }; - })(this)).select("title").text((function(_this) { - return function(d) { - return d[1]; - }; - })(this)); - return this.draw_legend(); - } else { - this.svg.selectAll(".bar").data(this.sorted_samples()).transition().duration(1000).style("fill", (function(_this) { - return function(d) { - console.log("this color:", _this.trait_color_dict[d[0]]); - return _this.trait_color_dict[d[0]]; - }; - })(this)).select("title").text((function(_this) { - return function(d) { - return d[1]; - }; - })(this)); - return this.draw_legend(); - } + return console.log("SAMPLES:", this.samples); }; Bar_Chart.prototype.trim_values = function(trait_sample_data) { diff --git a/wqflask/wqflask/static/new/javascript/draw_probability_plot.coffee b/wqflask/wqflask/static/new/javascript/draw_probability_plot.coffee index fab53b1d..09ab3bc4 100644 --- a/wqflask/wqflask/static/new/javascript/draw_probability_plot.coffee +++ b/wqflask/wqflask/static/new/javascript/draw_probability_plot.coffee @@ -50,9 +50,9 @@ redraw_prob_plot = (samples, sample_group) -> )
all_samples = samples[sample_group]
- names = (x for x in _.keys(all_samples) when samples[x] != null)
- sorted_names = names.sort((x, y) => all_samples[x] - all_samples[y])
- sorted_values = (all_samples[x] for x in sorted_names)
+ names = (x for x in _.keys(all_samples) when all_samples[x] != null)
+ sorted_names = names.sort((x, y) => all_samples[x].value - all_samples[y].value)
+ sorted_values = (all_samples[x].value for x in sorted_names)
sw_result = ShapiroWilkW(sorted_values)
W = sw_result.w.toFixed(3)
pvalue = sw_result.p.toFixed(3)
diff --git a/wqflask/wqflask/static/new/javascript/draw_probability_plot.js b/wqflask/wqflask/static/new/javascript/draw_probability_plot.js index b301b97f..3eb6295f 100644 --- a/wqflask/wqflask/static/new/javascript/draw_probability_plot.js +++ b/wqflask/wqflask/static/new/javascript/draw_probability_plot.js @@ -57,21 +57,21 @@ results = []; for (j = 0, len = ref.length; j < len; j++) { x = ref[j]; - if (samples[x] !== null) { + if (all_samples[x] !== null) { results.push(x); } } return results; })(); sorted_names = names.sort(function(x, y) { - return all_samples[x] - all_samples[y]; + return all_samples[x].value - all_samples[y].value; }); sorted_values = (function() { var j, len, results; results = []; for (j = 0, len = sorted_names.length; j < len; j++) { x = sorted_names[j]; - results.push(all_samples[x]); + results.push(all_samples[x].value); } return results; })(); diff --git a/wqflask/wqflask/static/new/javascript/show_trait.coffee b/wqflask/wqflask/static/new/javascript/show_trait.coffee index 3caa16d9..3dedd7d5 100755 --- a/wqflask/wqflask/static/new/javascript/show_trait.coffee +++ b/wqflask/wqflask/static/new/javascript/show_trait.coffee @@ -133,10 +133,10 @@ $ -> change_stats_value(sample_sets, category, row.vn, row.digits, show_effects) redraw_histogram = -> - root.histogram.redraw(_.values(root.selected_samples[root.histogram_group])) + root.histogram.redraw((x.value for x in _.values(root.selected_samples[root.histogram_group]))) redraw_bar_chart = -> - root.bar_chart.redraw(root.selected_samples[root.bar_chart_group]) + root.bar_chart.redraw(root.selected_samples, root.bar_chart_group) redraw_prob_plot = -> root.redraw_prob_plot_impl(root.selected_samples, root.prob_plot_group) @@ -219,12 +219,20 @@ $ -> real_value = parseFloat(real_value) sample_sets[table].add_value(real_value) - root.selected_samples[table][name] = real_value + + real_variance = $(row).find('.edit_sample_se').val() + if (is_number(real_variance)) + real_variance = parseFloat(real_variance) + else + real_variance = null + real_dict = {value: real_value, variance: real_variance} + root.selected_samples[table][name] = real_dict + #console.log("checking name of:", name) if not (name of already_seen) #console.log("haven't seen") sample_sets['samples_all'].add_value(real_value) - root.selected_samples['samples_all'][name] = real_value + root.selected_samples['samples_all'][name] = real_dict already_seen[name] = true console.log("towards end:", sample_sets) update_stat_values(sample_sets) @@ -433,7 +441,7 @@ $ -> redraw_histogram() root.bar_chart_group = 'samples_primary' - root.bar_chart = new Bar_Chart(sample_lists[0]) + root.bar_chart = new Bar_Chart(sample_lists) $('.bar_chart_samples_group').val(root.bar_chart_group) $('.bar_chart_samples_group').change -> root.bar_chart_group = $(this).val() @@ -445,20 +453,6 @@ $ -> root.prob_plot_group = $(this).val() redraw_prob_plot() - # new Box_Plot(sample_lists[0]) - - # $('.box_plot_samples_group').change -> - # $('#box_plot').remove() - # $('#box_plot_container').append('<div id="box_plot"></div>') - # group = $(this).val() - # if group == "samples_primary" - # new Box_Plot(sample_lists[0]) - # else if group == "samples_other" - # new Box_Plot(sample_lists[1]) - # else if group == "samples_all" - # all_samples = sample_lists[0].concat sample_lists[1] - # new Box_Plot(all_samples) - make_table() edit_data_change() # Set the values at the beginning diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index 1cd07155..7311d0a8 100755 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -144,10 +144,20 @@ return results; }; redraw_histogram = function() { - return root.histogram.redraw(_.values(root.selected_samples[root.histogram_group])); + var x; + return root.histogram.redraw((function() { + var i, len, ref, results; + ref = _.values(root.selected_samples[root.histogram_group]); + results = []; + for (i = 0, len = ref.length; i < len; i++) { + x = ref[i]; + results.push(x.value); + } + return results; + })()); }; redraw_bar_chart = function() { - return root.bar_chart.redraw(root.selected_samples[root.bar_chart_group]); + return root.bar_chart.redraw(root.selected_samples, root.bar_chart_group); }; redraw_prob_plot = function() { return root.redraw_prob_plot_impl(root.selected_samples, root.prob_plot_group); @@ -214,7 +224,7 @@ return processed; }; edit_data_change = function() { - var already_seen, checkbox, checked, i, j, len, len1, name, real_value, row, rows, sample_sets, table, tables; + var already_seen, checkbox, checked, i, j, len, len1, name, real_dict, real_value, real_variance, row, rows, sample_sets, table, tables; already_seen = {}; sample_sets = { samples_primary: new Stats([]), @@ -241,10 +251,20 @@ if (checked && is_number(real_value) && real_value !== "") { real_value = parseFloat(real_value); sample_sets[table].add_value(real_value); - root.selected_samples[table][name] = real_value; + real_variance = $(row).find('.edit_sample_se').val(); + if (is_number(real_variance)) { + real_variance = parseFloat(real_variance); + } else { + real_variance = null; + } + real_dict = { + value: real_value, + variance: real_variance + }; + root.selected_samples[table][name] = real_dict; if (!(name in already_seen)) { sample_sets['samples_all'].add_value(real_value); - root.selected_samples['samples_all'][name] = real_value; + root.selected_samples['samples_all'][name] = real_dict; already_seen[name] = true; } } @@ -459,7 +479,7 @@ return redraw_histogram(); }); root.bar_chart_group = 'samples_primary'; - root.bar_chart = new Bar_Chart(sample_lists[0]); + root.bar_chart = new Bar_Chart(sample_lists); $('.bar_chart_samples_group').val(root.bar_chart_group); $('.bar_chart_samples_group').change(function() { root.bar_chart_group = $(this).val(); diff --git a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.css b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.css index b03d0593..726f76c3 100644 --- a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.css +++ b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.css @@ -1,4 +1,4 @@ -/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-22 */ +/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-25 */ .nvd3 .nv-axis {
pointer-events:none;
opacity: 1;
diff --git a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.js b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.js index 1c1cd113..b11ce58f 100644 --- a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.js +++ b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.js @@ -1,4 +1,4 @@ -/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-22 */ +/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-25 */ (function(){ // set up main nv object @@ -2731,6 +2731,7 @@ nv.models.bulletChart = function() { , width = null , height = 55 , tickFormat = null + , ticks = null , noData = null , dispatch = d3.dispatch('tooltipShow', 'tooltipHide') ; @@ -2812,7 +2813,7 @@ nv.models.bulletChart = function() { // Update the tick groups. var tick = g.selectAll('g.nv-tick') - .data(x1.ticks( availableWidth / 50 ), function(d) { + .data(x1.ticks( ticks ? ticks : (availableWidth / 50) ), function(d) { return this.textContent || format(d); }); @@ -2894,6 +2895,7 @@ nv.models.bulletChart = function() { width: {get: function(){return width;}, set: function(_){width=_;}}, height: {get: function(){return height;}, set: function(_){height=_;}}, tickFormat: {get: function(){return tickFormat;}, set: function(_){tickFormat=_;}}, + ticks: {get: function(){return ticks;}, set: function(_){ticks=_;}}, noData: {get: function(){return noData;}, set: function(_){noData=_;}}, // deprecated options @@ -7600,7 +7602,6 @@ nv.models.lineWithFocusChart = function() { return chart; }; - nv.models.multiBar = function() { "use strict"; @@ -7617,11 +7618,13 @@ nv.models.multiBar = function() { , container = null , getX = function(d) { return d.x } , getY = function(d) { return d.y } + , getYerr = function(d) { return d.yErr } , forceY = [0] // 0 is forced by default.. this makes sense for the majority of bar graphs... user can always do chart.forceY([]) to remove , clipEdge = true , stacked = false , stackOffset = 'zero' // options include 'silhouette', 'wiggle', 'expand', 'zero', or a custom function , color = nv.utils.defaultColor() + , errorBarColor = nv.utils.defaultColor() , hideable = false , barColor = null // adding the ability to set the color for each rather than the whole group , disabled // used in conjunction with barColor to communicate from multiBarHorizontalChart what series are disabled @@ -7728,25 +7731,36 @@ nv.models.multiBar = function() { var seriesData = (xDomain && yDomain) ? [] : // if we know xDomain and yDomain, no need to calculate data.map(function(d, idx) { return d.values.map(function(d,i) { - return { x: getX(d,i), y: getY(d,i), y0: d.y0, y1: d.y1, idx:idx } + return { x: getX(d,i), y: getY(d,i), y0: d.y0, y1: d.y1, idx:idx, yErr: getYerr(d,i)} }) }); x.domain(xDomain || d3.merge(seriesData).map(function(d) { return d.x })) .rangeBands(xRange || [0, availableWidth], groupSpacing); - y.domain(yDomain || d3.extent(d3.merge(seriesData).map(function(d) { - var domain = d.y; - // increase the domain range if this series is stackable - if (stacked && !data[d.idx].nonStackable) { - if (d.y > 0){ - domain = d.y1 + y.domain(yDomain || d3.extent(d3.merge( + d3.merge(seriesData).map(function(d) { + var domain = d.y; + // increase the domain range if this series is stackable + if (stacked && !data[d.idx].nonStackable) { + if (d.y > 0){ + domain = d.y1 + } else { + domain = d.y1 + d.y + } + } + var yerr = d.yErr; + if (yerr) { + if (yerr.length) { + return [domain + yerr[0], domain + yerr[1]]; + } else { + yerr = Math.abs(yerr) + return [domain - yerr, domain + yerr]; + } } else { - domain = d.y1 + d.y + return [domain]; } - } - return domain; - }).concat(forceY))) + })).concat(forceY))) .range(yRange || [availableHeight, 0]); // If scale's domain don't have a range, slightly adjust to make one... so a chart can show a single data point @@ -7789,7 +7803,7 @@ nv.models.multiBar = function() { .style('fill-opacity', 1e-6); var exitTransition = renderWatch - .transition(groups.exit().selectAll('rect.nv-bar'), 'multibarExit', Math.min(100, duration)) + .transition(groups.exit().selectAll('g.nv-bar'), 'multibarExit', Math.min(100, duration)) .attr('y', function(d, i, j) { var yVal = y0(0) || 0; if (stacked) { @@ -7815,23 +7829,26 @@ nv.models.multiBar = function() { .style('stroke-opacity', 1) .style('fill-opacity', 0.75); - var bars = groups.selectAll('rect.nv-bar') + var bars = groups.selectAll('g.nv-bar') .data(function(d) { return (hideable && !data.length) ? hideable.values : d.values }); bars.exit().remove(); - var barsEnter = bars.enter().append('rect') + var barsEnter = bars.enter().append('g') .attr('class', function(d,i) { return getY(d,i) < 0 ? 'nv-bar negative' : 'nv-bar positive'}) - .attr('x', function(d,i,j) { - return stacked && !data[j].nonStackable ? 0 : (j * x.rangeBand() / data.length ) + .attr('transform', function(d,i,j) { + var _x = stacked && !data[j].nonStackable ? 0 : (j * x.rangeBand() / data.length ); + var _y = y0(stacked && !data[j].nonStackable ? d.y0 : 0) || 0; + return 'translate(' + _x + ',' + _y + ')'; }) - .attr('y', function(d,i,j) { return y0(stacked && !data[j].nonStackable ? d.y0 : 0) || 0 }) + ; + + barsEnter.append('rect') .attr('height', 0) .attr('width', function(d,i,j) { return x.rangeBand() / (stacked && !data[j].nonStackable ? 1 : data.length) }) - .attr('transform', function(d,i) { return 'translate(' + x(getX(d,i)) + ',0)'; }) + .style('fill', function(d,i,j){ return color(d, j, i); }) + .style('stroke', function(d,i,j){ return color(d, j, i); }) ; bars - .style('fill', function(d,i,j){ return color(d, j, i); }) - .style('stroke', function(d,i,j){ return color(d, j, i); }) .on('mouseover', function(d,i) { //TODO: figure out why j works above, but not here d3.select(this).classed('hover', true); dispatch.elementMouseover({ @@ -7871,13 +7888,34 @@ nv.models.multiBar = function() { }); d3.event.stopPropagation(); }); + + if (getYerr(data[0].values[0], 0)) { + barsEnter.append('polyline'); + + bars.select('polyline') + .attr('fill', 'none') + .attr('stroke', function(d, i, j) { return errorBarColor(d, j, i); }) + .attr('points', function(d,i) { + var yerr = getYerr(d,i) + , mid = 0.8 * x.rangeBand() / ((stacked ? 1 : data.length) * 2); + yerr = yerr.length ? yerr : [-Math.abs(yerr), Math.abs(yerr)]; + yerr = yerr.map(function(e) { return y(e) - y(0); }); + var a = [[-mid, yerr[0]], [mid, yerr[0]], [0, yerr[0]], [0, yerr[1]], [-mid, yerr[1]], [mid, yerr[1]]]; + return a.map(function (path) { return path.join(',') }).join(' '); + }) + .attr('transform', function(d, i) { + var xOffset = x.rangeBand() / ((stacked ? 1 : data.length) * 2); + var yOffset = getY(d,i) < 0 ? y(getY(d, i)) - y(0) : 0; + return 'translate(' + xOffset + ', ' + yOffset + ')'; + }) + } + bars .attr('class', function(d,i) { return getY(d,i) < 0 ? 'nv-bar negative' : 'nv-bar positive'}) - .attr('transform', function(d,i) { return 'translate(' + x(getX(d,i)) + ',0)'; }) if (barColor) { if (!disabled) disabled = data.map(function() { return true }); - bars + bars.select('rect') .style('fill', function(d,i,j) { return d3.rgb(barColor(d,i)).darker( disabled.map(function(d,i) { return i }).filter(function(d,i){ return !disabled[i] })[j] ).toString(); }) .style('stroke', function(d,i,j) { return d3.rgb(barColor(d,i)).darker( disabled.map(function(d,i) { return i }).filter(function(d,i){ return !disabled[i] })[j] ).toString(); }); } @@ -7889,7 +7927,7 @@ nv.models.multiBar = function() { }); if (stacked){ barSelection - .attr('y', function(d,i,j) { + .attr('transform', function(d,i,j) { var yVal = 0; // if stackable, stack it on top of the previous series if (!data[j].nonStackable) { @@ -7905,16 +7943,6 @@ nv.models.multiBar = function() { } } } - return yVal; - }) - .attr('height', function(d,i,j) { - if (!data[j].nonStackable) { - return Math.max(Math.abs(y(d.y+d.y0) - y(d.y0)), 1); - } else { - return Math.max(Math.abs(y(getY(d,i)) - y(0)),1) || 0; - } - }) - .attr('x', function(d,i,j) { var width = 0; if (data[j].nonStackable) { width = d.series * x.rangeBand() / data.length; @@ -7922,7 +7950,16 @@ nv.models.multiBar = function() { width = data[j].nonStackableSeries * x.rangeBand()/(nonStackableCount*2); } } - return width; + var xVal = width + x(getX(d, i)); + return 'translate(' + xVal + ',' + yVal + ')'; + }) + .select('rect') + .attr('height', function(d,i,j) { + if (!data[j].nonStackable) { + return Math.max(Math.abs(y(d.y+d.y0) - y(d.y0)), 1); + } else { + return Math.max(Math.abs(y(getY(d,i)) - y(0)),1) || 0; + } }) .attr('width', function(d,i,j){ if (!data[j].nonStackable) { @@ -7940,18 +7977,17 @@ nv.models.multiBar = function() { }); } else { - barSelection - .attr('x', function(d,i) { - return d.series * x.rangeBand() / data.length; - }) - .attr('width', x.rangeBand() / data.length) - .attr('y', function(d,i) { - return getY(d,i) < 0 ? + barSelection.attr('transform', function(d,i) { + var xVal = d.series * x.rangeBand() / data.length + x(getX(d, i)); + var yVal = getY(d,i) < 0 ? y(0) : y(0) - y(getY(d,i)) < 1 ? y(0) - 1 : y(getY(d,i)) || 0; + return 'translate(' + xVal + ',' + yVal + ')'; }) + .select('rect') + .attr('width', x.rangeBand() / data.length) .attr('height', function(d,i) { return Math.max(Math.abs(y(getY(d,i)) - y(0)),1) || 0; }); @@ -7987,6 +8023,7 @@ nv.models.multiBar = function() { height: {get: function(){return height;}, set: function(_){height=_;}}, x: {get: function(){return getX;}, set: function(_){getX=_;}}, y: {get: function(){return getY;}, set: function(_){getY=_;}}, + yErr: {get: function(){return getYerr;}, set: function(_){getYerr=_;}}, xScale: {get: function(){return x;}, set: function(_){x=_;}}, yScale: {get: function(){return y;}, set: function(_){y=_;}}, xDomain: {get: function(){return xDomain;}, set: function(_){xDomain=_;}}, @@ -8018,6 +8055,9 @@ nv.models.multiBar = function() { }}, barColor: {get: function(){return barColor;}, set: function(_){ barColor = _ ? nv.utils.getColor(_) : null; + }}, + errorBarColor: {get: function(){return errorBarColor;}, set: function(_){ + errorBarColor = _ ? nv.utils.getColor(_) : null; }} }); @@ -8025,6 +8065,7 @@ nv.models.multiBar = function() { return chart; }; + nv.models.multiBarChart = function() { "use strict"; @@ -8473,6 +8514,7 @@ nv.models.multiBarHorizontal = function() { , forceY = [0] // 0 is forced by default.. this makes sense for the majority of bar graphs... user can always do chart.forceY([]) to remove , color = nv.utils.defaultColor() , barColor = null // adding the ability to set the color for each rather than the whole group + , errorBarColor = nv.utils.defaultColor() , disabled // used in conjunction with barColor to communicate from multiBarHorizontalChart what series are disabled , stacked = false , showValues = false @@ -8543,14 +8585,35 @@ nv.models.multiBarHorizontal = function() { var seriesData = (xDomain && yDomain) ? [] : // if we know xDomain and yDomain, no need to calculate data.map(function(d) { return d.values.map(function(d,i) { - return { x: getX(d,i), y: getY(d,i), y0: d.y0, y1: d.y1 } + return { x: getX(d,i), y: getY(d,i), y0: d.y0, y1: d.y1, yErr: getYerr(d,i) } }) }); x.domain(xDomain || d3.merge(seriesData).map(function(d) { return d.x })) .rangeBands(xRange || [0, availableHeight], groupSpacing); - y.domain(yDomain || d3.extent(d3.merge(seriesData).map(function(d) { return stacked ? (d.y > 0 ? d.y1 + d.y : d.y1 ) : d.y }).concat(forceY))) + y.domain(yDomain || d3.extent(d3.merge( + d3.merge(seriesData).map(function(d) { + var domain = d.y; + if (stacked) { + if (d.y > 0){ + domain = d.y1 + d.y + } else { + domain = d.y1 + } + } + var yerr = d.yErr; + if (yerr) { + if (yerr.length) { + return [domain + yerr[0], domain + yerr[1]]; + } else { + yerr = Math.abs(yerr) + return [domain - yerr, domain + yerr]; + } + } else { + return [domain]; + } + })).concat(forceY))) if (showValues && !stacked) y.range(yRange || [(y.domain()[0] < 0 ? valuePadding : 0), availableWidth - (y.domain()[1] > 0 ? valuePadding : 0) ]); @@ -8649,11 +8712,12 @@ nv.models.multiBarHorizontal = function() { d3.event.stopPropagation(); }); - if (getYerr(data[0],0)) { + if (getYerr(data[0].values[0], 0)) { barsEnter.append('polyline'); bars.select('polyline') .attr('fill', 'none') + .attr('stroke', function(d,i,j) { return errorBarColor(d, j, i); }) .attr('points', function(d,i) { var xerr = getYerr(d,i) , mid = 0.8 * x.rangeBand() / ((stacked ? 1 : data.length) * 2); @@ -8802,6 +8866,9 @@ nv.models.multiBarHorizontal = function() { }}, barColor: {get: function(){return barColor;}, set: function(_){ barColor = _ ? nv.utils.getColor(_) : null; + }}, + errorBarColor: {get: function(){return errorBarColor;}, set: function(_){ + errorBarColor = _ ? nv.utils.getColor(_) : null; }} }); diff --git a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.min.js b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.min.js index 7fdf54d5..ab17e9fe 100644 --- a/wqflask/wqflask/static/new/packages/nvd3/nv.d3.min.js +++ b/wqflask/wqflask/static/new/packages/nvd3/nv.d3.min.js @@ -1,8 +1,8 @@ -/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-22 */ +/* nvd3 version 1.8.1 (https://github.com/novus/nvd3) 2015-05-25 */ !function(){var a={};a.dev=!1,a.tooltip=a.tooltip||{},a.utils=a.utils||{},a.models=a.models||{},a.charts={},a.logs={},a.dom={},a.dispatch=d3.dispatch("render_start","render_end"),Function.prototype.bind||(Function.prototype.bind=function(a){if("function"!=typeof this)throw new TypeError("Function.prototype.bind - what is trying to be bound is not callable");var b=Array.prototype.slice.call(arguments,1),c=this,d=function(){},e=function(){return c.apply(this instanceof d&&a?this:a,b.concat(Array.prototype.slice.call(arguments)))};return d.prototype=this.prototype,e.prototype=new d,e}),a.dev&&(a.dispatch.on("render_start",function(b){a.logs.startTime=+new Date}),a.dispatch.on("render_end",function(b){a.logs.endTime=+new Date,a.logs.totalTime=a.logs.endTime-a.logs.startTime,a.log("total",a.logs.totalTime)})),a.log=function(){if(a.dev&&window.console&&console.log&&console.log.apply)console.log.apply(console,arguments);else if(a.dev&&window.console&&"function"==typeof console.log&&Function.prototype.bind){var b=Function.prototype.bind.call(console.log,console);b.apply(console,arguments)}return arguments[arguments.length-1]},a.deprecated=function(a,b){console&&console.warn&&console.warn("nvd3 warning: `"+a+"` has been deprecated. ",b||"")},a.render=function(b){b=b||1,a.render.active=!0,a.dispatch.render_start();var c=function(){for(var d,e,f=0;b>f&&(e=a.render.queue[f]);f++)d=e.generate(),typeof e.callback==typeof Function&&e.callback(d);a.render.queue.splice(0,f),a.render.queue.length?setTimeout(c):(a.dispatch.render_end(),a.render.active=!1)};setTimeout(c)},a.render.active=!1,a.render.queue=[],a.addGraph=function(b){typeof arguments[0]==typeof Function&&(b={generate:arguments[0],callback:arguments[1]}),a.render.queue.push(b),a.render.active||a.render()},"undefined"!=typeof module&&"undefined"!=typeof exports&&(module.exports=a),"undefined"!=typeof window&&(window.nv=a),a.dom.write=function(a){return void 0!==window.fastdom?fastdom.write(a):a()},a.dom.read=function(a){return void 0!==window.fastdom?fastdom.read(a):a()},a.interactiveGuideline=function(){"use strict";function b(l){l.each(function(l){function m(){var a=d3.mouse(this),d=a[0],e=a[1],i=!0,j=!1;if(k&&(d=d3.event.offsetX,e=d3.event.offsetY,"svg"!==d3.event.target.tagName&&(i=!1),d3.event.target.className.baseVal.match("nv-legend")&&(j=!0)),i&&(d-=f.left,e-=f.top),0>d||0>e||d>o||e>p||d3.event.relatedTarget&&void 0===d3.event.relatedTarget.ownerSVGElement||j){if(k&&d3.event.relatedTarget&&void 0===d3.event.relatedTarget.ownerSVGElement&&(void 0===d3.event.relatedTarget.className||d3.event.relatedTarget.className.match(c.nvPointerEventsClass)))return;return h.elementMouseout({mouseX:d,mouseY:e}),b.renderGuideLine(null),void c.hidden(!0)}c.hidden(!1);var l=g.invert(d);h.elementMousemove({mouseX:d,mouseY:e,pointXValue:l}),"dblclick"===d3.event.type&&h.elementDblclick({mouseX:d,mouseY:e,pointXValue:l}),"click"===d3.event.type&&h.elementClick({mouseX:d,mouseY:e,pointXValue:l})}var n=d3.select(this),o=d||960,p=e||400,q=n.selectAll("g.nv-wrap.nv-interactiveLineLayer").data([l]),r=q.enter().append("g").attr("class"," nv-wrap 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a.left?a.left:f.left,b):f},b.width=function(a){return arguments.length?(d=a,b):d},b.height=function(a){return arguments.length?(e=a,b):e},b.xScale=function(a){return arguments.length?(g=a,b):g},b.showGuideLine=function(a){return arguments.length?(i=a,b):i},b.svgContainer=function(a){return arguments.length?(j=a,b):j},b},a.interactiveBisect=function(a,b,c){"use strict";if(!(a instanceof Array))return null;var d;d="function"!=typeof c?function(a){return a.x}:c;var e=function(a,b){return d(a)-b},f=d3.bisector(e).left,g=d3.max([0,f(a,b)-1]),h=d(a[g]);if("undefined"==typeof h&&(h=g),h===b)return g;var i=d3.min([g+1,a.length-1]),j=d(a[i]);return"undefined"==typeof j&&(j=i),Math.abs(j-b)>=Math.abs(h-b)?g:i},a.nearestValueIndex=function(a,b,c){"use strict";var d=1/0,e=null;return a.forEach(function(a,f){var g=Math.abs(b-a);null!=a&&d>=g&&c>g&&(d=g,e=f)}),e},function(){"use strict";a.models.tooltip=function(){function b(){if(k){var a=d3.select(k);"svg"!==a.node().tagName&&(a=a.select("svg"));var b=a.node()?a.attr("viewBox"):null;if(b){b=b.split(" ");var c=parseInt(a.style("width"),10)/b[2];p.left=p.left*c,p.top=p.top*c}}}function c(){if(!n){var a;a=k?k:document.body,n=d3.select(a).append("div").attr("class","nvtooltip "+(j?j:"xy-tooltip")).attr("id",v),n.style("top",0).style("left",0),n.style("opacity",0),n.selectAll("div, table, td, tr").classed(w,!0),n.classed(w,!0),o=n.node()}}function d(){if(r&&B(e)){b();var f=p.left,g=null!==i?i:p.top;return a.dom.write(function(){c();var b=A(e);b&&(o.innerHTML=b),k&&u?a.dom.read(function(){var a=k.getElementsByTagName("svg")[0],b={left:0,top:0};if(a){var c=a.getBoundingClientRect(),d=k.getBoundingClientRect(),e=c.top;if(0>e){var i=k.getBoundingClientRect();e=Math.abs(e)>i.height?0:e}b.top=Math.abs(e-d.top),b.left=Math.abs(c.left-d.left)}f+=k.offsetLeft+b.left-2*k.scrollLeft,g+=k.offsetTop+b.top-2*k.scrollTop,h&&h>0&&(g=Math.floor(g/h)*h),C([f,g])}):C([f,g])}),d}}var e=null,f="w",g=25,h=0,i=null,j=null,k=null,l=!0,m=400,n=null,o=null,p={left:null,top:null},q={left:0,top:0},r=!0,s=100,t=!0,u=!1,v="nvtooltip-"+Math.floor(1e5*Math.random()),w="nv-pointer-events-none",x=function(a,b){return a},y=function(a){return a},z=function(a,b){return a},A=function(a){if(null===a)return"";var b=d3.select(document.createElement("table"));if(t){var c=b.selectAll("thead").data([a]).enter().append("thead");c.append("tr").append("td").attr("colspan",3).append("strong").classed("x-value",!0).html(y(a.value))}var d=b.selectAll("tbody").data([a]).enter().append("tbody"),e=d.selectAll("tr").data(function(a){return a.series}).enter().append("tr").classed("highlight",function(a){return a.highlight});e.append("td").classed("legend-color-guide",!0).append("div").style("background-color",function(a){return a.color}),e.append("td").classed("key",!0).html(function(a,b){return z(a.key,b)}),e.append("td").classed("value",!0).html(function(a,b){return 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d.nvPointerEventsClass=w,d.options=a.utils.optionsFunc.bind(d),d._options=Object.create({},{duration:{get:function(){return s},set:function(a){s=a}},gravity:{get:function(){return f},set:function(a){f=a}},distance:{get:function(){return g},set:function(a){g=a}},snapDistance:{get:function(){return h},set:function(a){h=a}},classes:{get:function(){return j},set:function(a){j=a}},chartContainer:{get:function(){return k},set:function(a){k=a}},fixedTop:{get:function(){return i},set:function(a){i=a}},enabled:{get:function(){return r},set:function(a){r=a}},hideDelay:{get:function(){return m},set:function(a){m=a}},contentGenerator:{get:function(){return A},set:function(a){A=a}},valueFormatter:{get:function(){return x},set:function(a){x=a}},headerFormatter:{get:function(){return y},set:function(a){y=a}},keyFormatter:{get:function(){return z},set:function(a){z=a}},headerEnabled:{get:function(){return t},set:function(a){t=a}},_isInteractiveLayer:{get:function(){return u},set:function(a){u=!!a}},position:{get:function(){return p},set:function(a){p.left=void 0!==a.left?a.left:p.left,p.top=void 0!==a.top?a.top:p.top}},offset:{get:function(){return q},set:function(a){q.left=void 0!==a.left?a.left:q.left,q.top=void 0!==a.top?a.top:q.top}},hidden:{get:function(){return l},set:function(a){l!=a&&(l=!!a,d())}},data:{get:function(){return e},set:function(a){a.point&&(a.value=a.point.x,a.series=a.series||{},a.series.value=a.point.y,a.series.color=a.point.color||a.series.color),e=a}},tooltipElem:{get:function(){return o},set:function(a){}},id:{get:function(){return v},set:function(a){}}}),a.utils.initOptions(d),d}}(),a.utils.windowSize=function(){var a={width:640,height:480};return window.innerWidth&&window.innerHeight?(a.width=window.innerWidth,a.height=window.innerHeight,a):"CSS1Compat"==document.compatMode&&document.documentElement&&document.documentElement.offsetWidth?(a.width=document.documentElement.offsetWidth,a.height=document.documentElement.offsetHeight,a):document.body&&document.body.offsetWidth?(a.width=document.body.offsetWidth,a.height=document.body.offsetHeight,a):a},a.utils.windowResize=function(b){return window.addEventListener?window.addEventListener("resize",b):a.log("ERROR: Failed to bind to window.resize with: ",b),{callback:b,clear:function(){window.removeEventListener("resize",b)}}},a.utils.getColor=function(b){if(void 0===b)return a.utils.defaultColor();if(Array.isArray(b)){var c=d3.scale.ordinal().range(b);return function(a,b){var d=void 0===b?a:b;return a.color||c(d)}}return b},a.utils.defaultColor=function(){return a.utils.getColor(d3.scale.category20().range())},a.utils.customTheme=function(a,b,c){b=b||function(a){return a.key},c=c||d3.scale.category20().range();var d=c.length;return function(e,f){var g=b(e);return"function"==typeof a[g]?a[g]():void 0!==a[g]?a[g]:(d||(d=c.length),d-=1,c[d])}},a.utils.pjax=function(b,c){var d=function(d){d3.html(d,function(d){var e=d3.select(c).node();e.parentNode.replaceChild(d3.select(d).select(c).node(),e),a.utils.pjax(b,c)})};d3.selectAll(b).on("click",function(){history.pushState(this.href,this.textContent,this.href),d(this.href),d3.event.preventDefault()}),d3.select(window).on("popstate",function(){d3.event.state&&d(d3.event.state)})},a.utils.calcApproxTextWidth=function(a){if("function"==typeof a.style&&"function"==typeof a.text){var b=parseInt(a.style("font-size").replace("px",""),10),c=a.text().length;return c*b*.5}return 0},a.utils.NaNtoZero=function(a){return"number"!=typeof a||isNaN(a)||null===a||a===1/0||a===-(1/0)?0:a},d3.selection.prototype.watchTransition=function(a){var b=[this].concat([].slice.call(arguments,1));return a.transition.apply(a,b)},a.utils.renderWatch=function(b,c){if(!(this instanceof a.utils.renderWatch))return new a.utils.renderWatch(b,c);var d=void 0!==c?c:250,e=[],f=this;this.models=function(a){return a=[].slice.call(arguments,0),a.forEach(function(a){a.__rendered=!1,function(a){a.dispatch.on("renderEnd",function(b){a.__rendered=!0,f.renderEnd("model")})}(a),e.indexOf(a)<0&&e.push(a)}),this},this.reset=function(a){void 0!==a&&(d=a),e=[]},this.transition=function(a,b,c){if(b=arguments.length>1?[].slice.call(arguments,1):[],c=b.length>1?b.pop():void 0!==d?d:250,a.__rendered=!1,e.indexOf(a)<0&&e.push(a),0===c)return a.__rendered=!0,a.delay=function(){return this},a.duration=function(){return this},a;0===a.length?a.__rendered=!0:a.every(function(a){return!a.length})?a.__rendered=!0:a.__rendered=!1;var g=0;return a.transition().duration(c).each(function(){++g}).each("end",function(c,d){0===--g&&(a.__rendered=!0,f.renderEnd.apply(this,b))})},this.renderEnd=function(){e.every(function(a){return a.__rendered})&&(e.forEach(function(a){a.__rendered=!1}),b.renderEnd.apply(this,arguments))}},a.utils.deepExtend=function(b){var c=arguments.length>1?[].slice.call(arguments,1):[];c.forEach(function(c){for(var d in c){var e=b[d]instanceof Array,f="object"==typeof b[d],g="object"==typeof c[d];f&&!e&&g?a.utils.deepExtend(b[d],c[d]):b[d]=c[d]}})},a.utils.state=function(){if(!(this instanceof a.utils.state))return new a.utils.state;var b={},c=function(){},d=function(){return{}},e=null,f=null;this.dispatch=d3.dispatch("change","set"),this.dispatch.on("set",function(a){c(a,!0)}),this.getter=function(a){return d=a,this},this.setter=function(a,b){return b||(b=function(){}),c=function(c,d){a(c),d&&b()},this},this.init=function(b){e=e||{},a.utils.deepExtend(e,b)};var g=function(){var a=d();if(JSON.stringify(a)===JSON.stringify(b))return!1;for(var c in a)void 0===b[c]&&(b[c]={}),b[c]=a[c],f=!0;return!0};this.update=function(){e&&(c(e,!1),e=null),g.call(this)&&this.dispatch.change(b)}},a.utils.optionsFunc=function(a){return a&&d3.map(a).forEach(function(a,b){"function"==typeof this[a]&&this[a](b)}.bind(this)),this},a.utils.calcTicksX=function(b,c){var d=1,e=0;for(e;e<c.length;e+=1){var f=c[e]&&c[e].values?c[e].values.length:0;d=f>d?f:d}return a.log("Requested number of ticks: ",b),a.log("Calculated max values to be: ",d),b=b>d?b=d-1:b,b=1>b?1:b,b=Math.floor(b),a.log("Calculating tick count as: ",b),b},a.utils.calcTicksY=function(b,c){return a.utils.calcTicksX(b,c)},a.utils.initOption=function(a,b){a._calls&&a._calls[b]?a[b]=a._calls[b]:(a[b]=function(c){return arguments.length?(a._overrides[b]=!0,a._options[b]=c,a):a._options[b]},a["_"+b]=function(c){return arguments.length?(a._overrides[b]||(a._options[b]=c),a):a._options[b]})},a.utils.initOptions=function(b){b._overrides=b._overrides||{};var c=Object.getOwnPropertyNames(b._options||{}),d=Object.getOwnPropertyNames(b._calls||{});c=c.concat(d);for(var e in c)a.utils.initOption(b,c[e])},a.utils.inheritOptionsD3=function(a,b,c){a._d3options=c.concat(a._d3options||[]),c.unshift(b),c.unshift(a),d3.rebind.apply(this,c)},a.utils.arrayUnique=function(a){return a.sort().filter(function(b,c){return!c||b!=a[c-1]})},a.utils.symbolMap=d3.map(),a.utils.symbol=function(){function b(b,e){var f=c.call(this,b,e),g=d.call(this,b,e);return-1!==d3.svg.symbolTypes.indexOf(f)?d3.svg.symbol().type(f).size(g)():a.utils.symbolMap.get(f)(g)}var c,d=64;return b.type=function(a){return arguments.length?(c=d3.functor(a),b):c},b.size=function(a){return arguments.length?(d=d3.functor(a),b):d},b},a.utils.inheritOptions=function(b,c){var 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T;if(T="wiggle"===e.offset()?0:a.utils.calcTicksY(L/36,k),g.scale(d)._ticks(T).tickSize(-K,0),"expand"===e.style()||"stack_percent"===e.style()){var U=g.tickFormat();D&&U===J||(D=U),g.tickFormat(J)}else D&&(g.tickFormat(D),D=null);P.select(".nv-y.nv-axis").transition().duration(0).call(g)}e.dispatch.on("areaClick.toggle",function(a){1===k.filter(function(a){return!a.disabled}).length?k.forEach(function(a){a.disabled=!1}):k.forEach(function(b,c){b.disabled=c!=a.seriesIndex}),v.disabled=k.map(function(a){return!!a.disabled}),y.stateChange(v),b.update()}),h.dispatch.on("stateChange",function(a){for(var c in a)v[c]=a[c];y.stateChange(v),b.update()}),i.dispatch.on("legendClick",function(a,c){a.disabled&&(R=R.map(function(a){return a.disabled=!0,a}),a.disabled=!1,e.style(a.style),v.style=e.style(),y.stateChange(v),b.update())}),j.dispatch.on("elementMousemove",function(c){e.clearHighlights();var d,g,h,i=[];if(k.filter(function(a,b){return 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e.dispatch.on("elementMouseover.tooltip",function(a){a.value=b.x()(a.data),a.series={key:a.data.key,value:b.y()(a.data),color:a.color},j.data(a).hidden(!1)}),e.dispatch.on("elementMouseout.tooltip",function(a){j.hidden(!0)}),e.dispatch.on("elementMousemove.tooltip",function(a){j.position({top:d3.event.pageY,left:d3.event.pageX})()}),b.dispatch=x,b.multibar=e,b.legend=h,b.controls=i,b.xAxis=f,b.yAxis=g,b.state=u,b.tooltip=j,b.options=a.utils.optionsFunc.bind(b),b._options=Object.create({},{width:{get:function(){return l},set:function(a){l=a}},height:{get:function(){return m},set:function(a){m=a}},showLegend:{get:function(){return q},set:function(a){q=a}},showControls:{get:function(){return o},set:function(a){o=a}},controlLabels:{get:function(){return p},set:function(a){p=a}},showXAxis:{get:function(){return r},set:function(a){r=a}},showYAxis:{get:function(){return s},set:function(a){s=a}},defaultState:{get:function(){return v},set:function(a){v=a}},noData:{get:function(){return 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T;if(T="wiggle"===e.offset()?0:a.utils.calcTicksY(L/36,k),g.scale(d)._ticks(T).tickSize(-K,0),"expand"===e.style()||"stack_percent"===e.style()){var U=g.tickFormat();D&&U===J||(D=U),g.tickFormat(J)}else D&&(g.tickFormat(D),D=null);P.select(".nv-y.nv-axis").transition().duration(0).call(g)}e.dispatch.on("areaClick.toggle",function(a){1===k.filter(function(a){return!a.disabled}).length?k.forEach(function(a){a.disabled=!1}):k.forEach(function(b,c){b.disabled=c!=a.seriesIndex}),v.disabled=k.map(function(a){return!!a.disabled}),y.stateChange(v),b.update()}),h.dispatch.on("stateChange",function(a){for(var c in a)v[c]=a[c];y.stateChange(v),b.update()}),i.dispatch.on("legendClick",function(a,c){a.disabled&&(R=R.map(function(a){return a.disabled=!0,a}),a.disabled=!1,e.style(a.style),v.style=e.style(),y.stateChange(v),b.update())}),j.dispatch.on("elementMousemove",function(c){e.clearHighlights();var d,g,h,i=[];if(k.filter(function(a,b){return 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nv-chart-"+k),B=A.selectAll("nv-sunburst");z.attr("transform","translate("+w/2+","+x/2+")"),l.on("click",function(a,b){o.chartClick({data:a,index:b,pos:d3.event,id:k})}),q.range([0,y]),c=c||b,e=b[0],r.value(j[i]||j.count),v=B.data(r.nodes).enter().append("path").attr("d",s).style("fill",function(a){return m((a.children?a:a.parent).name)}).style("stroke","#FFF").on("click",function(a){d!==c&&c!==a&&(d=c),c=a,v.transition().duration(n).attrTween("d",u(a))}).each(t).on("dblclick",function(a){d.parent==a&&v.transition().duration(n).attrTween("d",u(e))}).each(t).on("mouseover",function(a,b){d3.select(this).classed("hover",!0).style("opacity",.8),o.elementMouseover({data:a,color:d3.select(this).style("fill")})}).on("mouseout",function(a,b){d3.select(this).classed("hover",!1).style("opacity",1),o.elementMouseout({data:a})}).on("mousemove",function(a,b){o.elementMousemove({data:a})})}),t.renderEnd("sunburst immediate"),b}var c,d,e,f={top:0,right:0,bottom:0,left:0},g=null,h=null,i="count",j={count:function(a){return 1},size:function(a){return a.size}},k=Math.floor(1e4*Math.random()),l=null,m=a.utils.defaultColor(),n=500,o=d3.dispatch("chartClick","elementClick","elementDblClick","elementMousemove","elementMouseover","elementMouseout","renderEnd"),p=d3.scale.linear().range([0,2*Math.PI]),q=d3.scale.sqrt(),r=d3.layout.partition().sort(null).value(function(a){return 1}),s=d3.svg.arc().startAngle(function(a){return Math.max(0,Math.min(2*Math.PI,p(a.x)))}).endAngle(function(a){return Math.max(0,Math.min(2*Math.PI,p(a.x+a.dx)))}).innerRadius(function(a){return Math.max(0,q(a.y))}).outerRadius(function(a){return Math.max(0,q(a.y+a.dy))}),t=a.utils.renderWatch(o);return b.dispatch=o,b.options=a.utils.optionsFunc.bind(b),b._options=Object.create({},{width:{get:function(){return g},set:function(a){g=a}},height:{get:function(){return h},set:function(a){h=a}},mode:{get:function(){return i},set:function(a){i=a}},id:{get:function(){return k},set:function(a){k=a}},duration:{get:function(){return n},set:function(a){n=a}},margin:{get:function(){return f},set:function(a){f.top=void 0!=a.top?a.top:f.top,f.right=void 0!=a.right?a.right:f.right,f.bottom=void 0!=a.bottom?a.bottom:f.bottom,f.left=void 0!=a.left?a.left:f.left}},color:{get:function(){return m},set:function(b){m=a.utils.getColor(b)}}}),a.utils.initOptions(b),b},a.models.sunburstChart=function(){"use strict";function b(d){return m.reset(),m.models(c),d.each(function(d){var h=d3.select(this);a.utils.initSVG(h);var i=a.utils.availableWidth(f,h,e),j=a.utils.availableHeight(g,h,e);if(b.update=function(){0===k?h.call(b):h.transition().duration(k).call(b)},b.container=this,!d||!d.length)return a.utils.noData(b,h),b;h.selectAll(".nv-noData").remove();var l=h.selectAll("g.nv-wrap.nv-sunburstChart").data(d),m=l.enter().append("g").attr("class","nvd3 nv-wrap nv-sunburstChart").append("g"),n=l.select("g");m.append("g").attr("class","nv-sunburstWrap"),l.attr("transform","translate("+e.left+","+e.top+")"),c.width(i).height(j);var o=n.select(".nv-sunburstWrap").datum(d);d3.transition(o).call(c)}),m.renderEnd("sunburstChart immediate"),b}var c=a.models.sunburst(),d=a.models.tooltip(),e={top:30,right:20,bottom:20,left:20},f=null,g=null,h=a.utils.defaultColor(),i=(Math.round(1e5*Math.random()),null),j=null,k=250,l=d3.dispatch("tooltipShow","tooltipHide","stateChange","changeState","renderEnd"),m=a.utils.renderWatch(l);return d.headerEnabled(!1).duration(0).valueFormatter(function(a,b){return a}),c.dispatch.on("elementMouseover.tooltip",function(a){a.series={key:a.data.name,value:a.data.size,color:a.color},d.data(a).hidden(!1)}),c.dispatch.on("elementMouseout.tooltip",function(a){d.hidden(!0)}),c.dispatch.on("elementMousemove.tooltip",function(a){d.position({top:d3.event.pageY,left:d3.event.pageX})()}),b.dispatch=l,b.sunburst=c,b.tooltip=d,b.options=a.utils.optionsFunc.bind(b),b._options=Object.create({},{noData:{get:function(){return j},set:function(a){j=a}},defaultState:{get:function(){return i},set:function(a){i=a}},color:{get:function(){return h},set:function(a){h=a,c.color(h)}},duration:{get:function(){return k},set:function(a){k=a,m.reset(k),c.duration(k)}},margin:{get:function(){return e},set:function(a){e.top=void 0!==a.top?a.top:e.top,e.right=void 0!==a.right?a.right:e.right,e.bottom=void 0!==a.bottom?a.bottom:e.bottom,e.left=void 0!==a.left?a.left:e.left}}}),a.utils.inheritOptions(b,c),a.utils.initOptions(b),b},a.version="1.8.1"}();
\ No newline at end of file diff --git a/wqflask/wqflask/templates/show_trait.html b/wqflask/wqflask/templates/show_trait.html index 560e23e9..559650f3 100755 --- a/wqflask/wqflask/templates/show_trait.html +++ b/wqflask/wqflask/templates/show_trait.html @@ -146,7 +146,7 @@ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script> <script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script> <script language="javascript" type="text/javascript" src="/static/packages/TableTools/media/js/TableTools.min.js"></script> - +"></script> <script type="text/javascript" charset="utf-8"> function getValue(x) { diff --git a/wqflask/wqflask/templates/show_trait_statistics_new.html b/wqflask/wqflask/templates/show_trait_statistics_new.html index 15fc2cf7..4eb74e5a 100755 --- a/wqflask/wqflask/templates/show_trait_statistics_new.html +++ b/wqflask/wqflask/templates/show_trait_statistics_new.html @@ -79,15 +79,15 @@ </button> </div> </div> - <div class="row" style="height: 0px"> - <div id="bar_chart_legend" style="margin-left: 150px; margin-top:50px; positive: relative;"> + <div class="row" style="position:relative"> + <div id="bar_chart_legend" style="margin-left: 150px; margin-top:20px; position: absolute;"> <span id="legend-left"></span> <span id="legend-colors"></span> <span id="legend-right"></span> </div> </div> <div style="margin-left: 20px; margin-right: 20px;" class="row" id="bar_chart_container"> - <div id="bar_chart" class="barchart"></div> + <svg></svg> </div> </div> <div class="tab-pane" id="probability_plot"> |