diff options
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/base/data_set.py | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 40 |
2 files changed, 16 insertions, 25 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 7088913c..8ced1528 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -41,7 +41,6 @@ from pprint import pformat as pf DS_NAME_MAP = {} def create_dataset(dataset_name): - #cursor = db_conn.cursor() print("dataset_name:", dataset_name) query = """ diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index ae1cadd0..1be1185c 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -26,7 +26,6 @@ from utility.THCell import THCell from utility.TDCell import TDCell from base.data_set import create_dataset from base.trait import GeneralTrait -from base.templatePage import templatePage from wqflask import parser from wqflask import do_search from utility import webqtlUtil @@ -37,22 +36,18 @@ from utility import formatting #from base.JinjaPage import JinjaEnv, JinjaPage -class SearchResultPage(templatePage): +class SearchResultPage(): #maxReturn = 3000 - def __init__(self, fd): + def __init__(self, kw): print("initing SearchResultPage") #import logging_tree #logging_tree.printout() - self.fd = fd - templatePage.__init__(self, fd) + #self.fd = fd + #templatePage.__init__(self, fd) #assert self.openMysql(), "Couldn't open MySQL" - print("fd is:", pf(fd)) - print("fd.dict is:", pf(fd['dataset'])) - self.dataset = fd['dataset'] - # change back to self.dataset #if not self.dataset or self.dataset == 'spacer': # #Error, No dataset selected @@ -62,20 +57,17 @@ class SearchResultPage(templatePage): ########################################### # All Phenotypes is a special case we'll deal with later - if self.dataset == "All Phenotypes": - self.cursor.execute(""" - select PublishFreeze.Name, InbredSet.Name, InbredSet.Id from PublishFreeze, - InbredSet where PublishFreeze.Name not like 'BXD300%' and InbredSet.Id = - PublishFreeze.InbredSetId""") - results = self.cursor.fetchall() - self.dataset = map(lambda x: DataSet(x[0], self.cursor), results) - self.dataset_groups = map(lambda x: x[1], results) - self.dataset_group_ids = map(lambda x: x[2], results) - else: - print("self.dataset is:", pf(self.dataset)) - # Replaces a string with an object - self.dataset = create_dataset(self.dataset) - print("self.dataset is now:", pf(self.dataset)) + #if kw['dataset'] == "All Phenotypes": + # self.cursor.execute(""" + # select PublishFreeze.Name, InbredSet.Name, InbredSet.Id from PublishFreeze, + # InbredSet where PublishFreeze.Name not like 'BXD300%' and InbredSet.Id = + # PublishFreeze.InbredSetId""") + # results = self.cursor.fetchall() + # self.dataset = map(lambda x: DataSet(x[0], self.cursor), results) + # self.dataset_groups = map(lambda x: x[1], results) + # self.dataset_group_ids = map(lambda x: x[2], results) + #else: + self.dataset = create_dataset(kw['dataset']) self.search() self.gen_search_result() @@ -110,7 +102,7 @@ class SearchResultPage(templatePage): def search(self): - self.search_terms = parser.parse(self.fd['search_terms']) + self.search_terms = parser.parse(self.kw['search_terms']) print("After parsing:", self.search_terms) self.results = [] |