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-rw-r--r--wqflask/wqflask/marker_regression/run_mapping.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index cf217a96..35678df9 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -238,7 +238,7 @@ class RunMapping:
self.method = "em"
self.model = start_vars['mapmodel_rqtl']
self.pair_scan = False
- if 'pair_scan' in start_vars:
+ if start_vars['pair_scan'] == "true":
self.pair_scan = True
if self.permCheck and self.num_perm > 0:
self.perm_output, self.suggestive, self.significant, results = rqtl_mapping.run_rqtl(