diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/plink_mapping.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/marker_regression/plink_mapping.py b/wqflask/wqflask/marker_regression/plink_mapping.py index 9571015e..38ef7190 100644 --- a/wqflask/wqflask/marker_regression/plink_mapping.py +++ b/wqflask/wqflask/marker_regression/plink_mapping.py @@ -111,7 +111,7 @@ def parse_plink_output(output_filename, species): line_list = build_line_list(line=line) # only keep the records whose chromosome name is in db - if species.chromosomes.chromosomes.has_key(int(line_list[0])) and line_list[-1] and line_list[-1].strip()!='NA': + if int(line_list[0]) in species.chromosomes.chromosomes and line_list[-1] and line_list[-1].strip()!='NA': chr_name = species.chromosomes.chromosomes[int(line_list[0])] snp = line_list[1] @@ -121,7 +121,7 @@ def parse_plink_output(output_filename, species): if p_value < threshold_p_value: p_value_dict[snp] = float(p_value) - if plink_results.has_key(chr_name): + if chr_name in plink_results: value_list = plink_results[chr_name] # pvalue range is [0,1] |