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-rw-r--r--wqflask/wqflask/static/new/javascript/show_trait.js103
1 files changed, 64 insertions, 39 deletions
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js
index 8b9a57a3..092c890f 100644
--- a/wqflask/wqflask/static/new/javascript/show_trait.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait.js
@@ -667,54 +667,92 @@ $('#block_outliers').click(block_outliers);
reset_samples_table = function() {
$('input[name="transform"]').val("");
$('span[name="transform_text"]').text("")
- return $('.trait_value_input').each((function(_this) {
- return function(_index, element) {
- $(element).val($(element).data('value'));
- return $(element).parents('.value_se').show();
- };
- })(this));
+
+ tables = ['samples_primary', 'samples_other'];
+ for (_i = 0, _len = tables.length; _i < _len; _i++) {
+ table = tables[_i];
+ if ($('#' + table).length) {
+ table_api = $('#' + table).DataTable();
+ val_nodes = table_api.column(3).nodes().to$();
+ for (i = 0; i < val_nodes.length; i++) {
+ this_node = val_nodes[i].childNodes[0];
+ this_node.value = this_node.attributes["data-value"].value;
+ }
+ if (js_data.se_exists){
+ se_nodes = table_api.column(5).nodes().to$();
+ for (i = 0; i < val_nodes.length; i++) {
+ this_node = val_nodes[i].childNodes[0];
+ this_node.value = this_node.attributes["data-value"].value;
+ }
+ }
+ }
+ }
};
$('.reset').click(function() {
reset_samples_table();
edit_data_change();
});
+check_for_zero_to_one_vals = function() {
+ tables = ['samples_primary', 'samples_other'];
+ for (_i = 0, _len = tables.length; _i < _len; _i++) {
+ table = tables[_i];
+ if ($('#' + table).length) {
+ table_api = $('#' + table).DataTable();
+ val_nodes = table_api.column(3).nodes().to$();
+ for (i = 0; i < val_nodes.length; i++) {
+ this_node = val_nodes[i].childNodes[0];
+ if(!isNaN(this_node.value)) {
+ if (0 <= this_node.value && this_node.value < 1){
+ return true
+ }
+ }
+ }
+ }
+ }
+ return false
+}
+
log2_data = function(this_node) {
current_value = this_node.value;
- if(!isNaN(current_value)) {
+ original_value = this_node.attributes['data-value'].value;
+ if(!isNaN(current_value) && !isNaN(original_value)) {
if (zero_to_one_vals_exist){
- current_value = parseFloat(current_value) + 1;
+ original_value = parseFloat(original_value) + 1;
}
- this_node.value = Math.log2(current_value).toFixed(3);
+ this_node.value = Math.log2(original_value).toFixed(3);
}
};
log10_data = function() {
current_value = this_node.value;
- if(!isNaN(current_value)) {
+ original_value = this_node.attributes['data-value'].value;
+ if(!isNaN(current_value) && !isNaN(original_value)) {
if (zero_to_one_vals_exist){
- current_value = parseFloat(current_value) + 1;
+ original_value = parseFloat(original_value) + 1;
}
- this_node.value = Math.log10(current_value).toFixed(3);
+ this_node.value = Math.log10(original_value).toFixed(3);
}
};
-
sqrt_data = function() {
current_value = this_node.value;
- if(!isNaN(current_value)) {
- this_node.value = Math.sqrt(current_value).toFixed(3);
+ original_value = this_node.attributes['data-value'].value;
+ if(!isNaN(current_value) && !isNaN(original_value)) {
+ if (zero_to_one_vals_exist){
+ original_value = parseFloat(original_value) + 1;
+ }
+ this_node.value = Math.sqrt(original_value).toFixed(3);
}
};
invert_data = function() {
current_value = this_node.value;
if(!isNaN(current_value)) {
- this_node.value = -(current_value);
+ this_node.value = parseFloat(-(current_value)).toFixed(3);
}
};
-
qnorm_data = function() {
current_value = this_node.value;
qnorm_value = this_node.attributes['data-qnorm'].value;
@@ -725,29 +763,12 @@ qnorm_data = function() {
zscore_data = function() {
current_value = this_node.value;
- qnorm_value = this_node.attributes['data-zscore'].value;
+ zscore_value = this_node.attributes['data-zscore'].value;
if(!isNaN(current_value)) {
- this_node.value = qnorm_value;
+ this_node.value = zscore_value;
}
};
-check_for_zero_to_one_vals = function() {
- zero_to_one_vals_exist = false
- $('.trait_value_input').each(function() {
- current_value = $(this).data("value")
- if(isNaN(current_value)) {
- return true;
- } else {
- current_value = parseFloat(current_value)
- if (0 <= current_value && current_value < 1){
- zero_to_one_vals_exist = true
- return false
- }
- }
- });
- return zero_to_one_vals_exist
-}
-
do_transform = function(transform_type) {
tables = ['samples_primary', 'samples_other'];
for (_i = 0, _len = tables.length; _i < _len; _i++) {
@@ -804,7 +825,12 @@ normalize_data = function() {
else if ($('#norm_method option:selected').val() == 'invert'){
do_transform("invert")
$('input[name="transform"]').val("inverted")
- $('span[name="transform_text"]').text(" - Inverted")
+ if ($('span[name="transform_text"]:eq(0)').text() != ""){
+ current_text = $('span[name="transform_text"]:eq(0)').text();
+ $('span[name="transform_text"]').text(current_text + " + Inverted");
+ } else {
+ $('span[name="transform_text"]').text(" - Inverted")
+ }
}
else if ($('#norm_method option:selected').val() == 'qnorm'){
if ($('input[name="transform"]').val() != "qnorm") {
@@ -822,11 +848,10 @@ normalize_data = function() {
}
}
-zero_to_one_vals_exist = false
+zero_to_one_vals_exist = check_for_zero_to_one_vals();
show_transform_warning = function() {
transform_type = $('#norm_method option:selected').val()
- zero_to_one_vals_exist = check_for_zero_to_one_vals();
if (transform_type == "log2" || transform_type == "log10"){
if (zero_to_one_vals_exist){
$('#transform_alert').css("display", "block")