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-rwxr-xr-xwqflask/base/data_set.py8
-rw-r--r--wqflask/maintenance/generate_probesetfreeze_file.py123
-rw-r--r--wqflask/wqflask/static/new/javascript/dataset_menu_structure.json664
3 files changed, 476 insertions, 319 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 0b3b5248..c6d67e68 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -29,8 +29,6 @@ import itertools
from flask import Flask, g
-from htmlgen import HTMLgen2 as HT
-
import reaper
from base import webqtlConfig
@@ -252,11 +250,7 @@ class DataSet(object):
#self.cursor.execute(query)
#self.id, self.name, self.fullname, self.shortname = self.cursor.fetchone()
-
-
- #def genHTML(self, Class='c0dd'):
- # return HT.Href(text = HT.Span('%s Database' % self.fullname, Class= "fwb " + Class),
- # url= webqtlConfig.INFOPAGEHREF % self.name,target="_blank")
+
class PhenotypeDataSet(DataSet):
DS_NAME_MAP['Publish'] = 'PhenotypeDataSet'
diff --git a/wqflask/maintenance/generate_probesetfreeze_file.py b/wqflask/maintenance/generate_probesetfreeze_file.py
new file mode 100644
index 00000000..95515cea
--- /dev/null
+++ b/wqflask/maintenance/generate_probesetfreeze_file.py
@@ -0,0 +1,123 @@
+#!/usr/bin/python
+
+from __future__ import absolute_import, print_function, division
+
+import sys
+
+sys.path.insert(0, "..")
+
+import os
+import collections
+import csv
+
+import MySQLdb
+
+from base import webqtlConfig
+
+from pprint import pformat as pf
+
+
+def get_cursor():
+ con = MySQLdb.Connect(db=webqtlConfig.DB_UPDNAME,
+ host=webqtlConfig.MYSQL_UPDSERVER,
+ user=webqtlConfig.DB_UPDUSER,
+ passwd=webqtlConfig.DB_UPDPASSWD)
+ cursor = con.cursor()
+ return cursor
+
+def show_progress(process, counter):
+ if counter % 1000 == 0:
+ print("{}: {}".format(process, counter))
+
+def get_strains(cursor):
+ cursor.execute("""select Strain.Name
+ from Strain, StrainXRef, InbredSet
+ where Strain.Id = StrainXRef.StrainId and
+ StrainXRef.InbredSetId = InbredSet.Id
+ and InbredSet.Name=%s;
+ """, "BXD")
+
+ strains = [strain[0] for strain in cursor.fetchall()]
+ print("strains:", pf(strains))
+ for strain in strains:
+ print(" -", strain)
+
+ return strains
+
+def get_probeset_vals(cursor, dataset_name):
+ cursor.execute(""" select ProbeSet.Id, ProbeSet.Name
+ from ProbeSetXRef,
+ ProbeSetFreeze,
+ ProbeSet
+ where ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and
+ ProbeSetFreeze.Name = %s and
+ ProbeSetXRef.ProbeSetId = ProbeSet.Id;
+ """, dataset_name)
+
+ probesets = cursor.fetchall()
+
+ print("Fetched probesets")
+
+ probeset_vals = collections.OrderedDict()
+
+ for counter, probeset in enumerate(probesets):
+ cursor.execute(""" select Strain.Name, ProbeSetData.value
+ from ProbeSetData, ProbeSetXRef, ProbeSetFreeze, Strain
+ where ProbeSetData.Id = ProbeSetXRef.DataId
+ and ProbeSetData.StrainId = Strain.Id
+ and ProbeSetXRef.ProbeSetId = %s
+ and ProbeSetFreeze.Id = ProbeSetXRef.ProbeSetFreezeId
+ and ProbeSetFreeze.Name = %s;
+ """, (probeset[0], dataset_name))
+ val_dic = collections.OrderedDict()
+ vals = cursor.fetchall()
+ for val in vals:
+ val_dic[val[0]] = val[1]
+
+ probeset_vals[probeset[1]] = val_dic
+ show_progress("Querying DB", counter)
+
+ return probeset_vals
+
+def trim_strains(strains, probeset_vals):
+ trimmed_strains = []
+ #print("probeset_vals is:", pf(probeset_vals))
+ first_probeset = list(probeset_vals.itervalues())[0]
+ for strain in strains:
+ print("\n**** strain is:", pf(strain))
+ print("\n**** first_probeset is:", pf(first_probeset))
+ if strain in first_probeset:
+ trimmed_strains.append(strain)
+ print("trimmed_strains:", pf(trimmed_strains))
+ return trimmed_strains
+
+def write_data_matrix_file(strains, probeset_vals, filename):
+ with open(filename, "wb") as fh:
+ csv_writer = csv.writer(fh, delimiter=",", quoting=csv.QUOTE_ALL)
+ #print("strains is:", pf(strains))
+ csv_writer.writerow(['ID'] + strains)
+ for counter, probeset in enumerate(probeset_vals):
+ row_data = [probeset]
+ for strain in strains:
+ #print("probeset is: ", pf(probeset_vals[probeset]))
+ row_data.append(probeset_vals[probeset][strain])
+ #print("row_data is: ", pf(row_data))
+ csv_writer.writerow(row_data)
+ show_progress("Writing", counter)
+
+def main():
+ filename = os.path.expanduser("~/gene/wqflask/maintenance/" +
+ "ProbeSetFreezeId_379_FullName_EPFL_LISP_BXD_CD_Muscle_Affy_Mouse_Gene_1.0_ST_" +
+ "(Dec11)_RMA_**.txt")
+ dataset_name = "EPFLMouseMuscleCDRMA1211"
+
+ cursor = get_cursor()
+ strains = get_strains(cursor)
+ print("Getting probset_vals")
+ probeset_vals = get_probeset_vals(cursor, dataset_name)
+ print("Finished getting probeset_vals")
+ trimmed_strains = trim_strains(strains, probeset_vals)
+ write_data_matrix_file(trimmed_strains, probeset_vals, filename)
+
+if __name__ == '__main__':
+ main()
diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
index 898ffa02..88bdcb11 100644
--- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
+++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
@@ -64,14 +64,14 @@
],
"Leaf": [
[
- "B1LI0809R",
- "Barley1 Leaf INOC TTKS (Aug09) RMA"
- ],
- [
"B1LI0809M5",
"Barley1 Leaf INOC TTKS (Aug09) MAS5"
],
[
+ "B1LI0809R",
+ "Barley1 Leaf INOC TTKS (Aug09) RMA"
+ ],
+ [
"B1MI0809M5",
"Barley1 Leaf MOCK TTKS (Aug09) MAS5"
],
@@ -114,12 +114,12 @@
"Barley1 Leaf MAS 5.0 SCRI (Dec06)"
],
[
- "B30_K_1206_Rn",
- "Barley1 Leaf gcRMAn SCRI (Dec06)"
- ],
- [
"B30_K_1206_R",
"Barley1 Leaf gcRMA SCRI (Dec06)"
+ ],
+ [
+ "B30_K_1206_Rn",
+ "Barley1 Leaf gcRMAn SCRI (Dec06)"
]
],
"Phenotypes": [
@@ -212,14 +212,14 @@
"AD-cases-controls-Myers": {
"Brain": [
[
- "GSE15222_F_A_RI_0409",
- "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
- ],
- [
"GSE15222_F_N_RI_0409",
"GSE15222 Human Brain Normal Myers (Apr09) RankInv"
],
[
+ "GSE15222_F_A_RI_0409",
+ "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv"
+ ],
+ [
"GSE15222_F_RI_0409",
"GSE15222 Human Brain Myers (Apr09) RankInv"
]
@@ -381,43 +381,19 @@
"Amygdala": [
[
"KIN_YSM_AMY_0711",
- "KIN/YSM Human AMY Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Caudal Ganglionic Eminence": [
- [
- "KIN_YSM_CGE_0711",
- "KIN/YSM Human CGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Cerebellar Cortex": [
[
"KIN_YSM_CBC_0711",
- "KIN/YSM Human CBC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Diencephalon": [
- [
- "KIN_YSM_DIE_0711",
- "KIN/YSM Human DIE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Dorsal Thalamus": [
- [
- "KIN_YSM_DTH_0711",
- "KIN/YSM Human DTH Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Dorsolateral Prefrontal Cortex": [
[
"KIN_YSM_DFC_0711",
- "KIN/YSM Human DFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Frontal Cerebral Wall": [
- [
- "KIN_YSM_FC_0711",
- "KIN/YSM Human FC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Genotypes": [
@@ -429,55 +405,31 @@
"Hippocampus": [
[
"KIN_YSM_HIP_0711",
- "KIN/YSM Human HIP Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Inferior Temporal Cortex": [
[
"KIN_YSM_ITC_0711",
- "KIN/YSM Human ITC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Lateral Ganglionic Eminence": [
- [
- "KIN_YSM_LGE_0711",
- "KIN/YSM Human LGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Medial Ganglionic Eminence": [
- [
- "KIN_YSM_MGE_0711",
- "KIN/YSM Human MGE Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Medial Prefrontal Cortex": [
[
"KIN_YSM_MFC_0711",
- "KIN/YSM Human MFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Mediodorsal Nucleus of Thalamus": [
[
"KIN_YSM_MD_0711",
- "KIN/YSM Human MD Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Occipital Cerebral Wall": [
- [
- "KIN_YSM_OC_0711",
- "KIN/YSM Human OC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Orbital Prefrontal Cortex": [
[
"KIN_YSM_OFC_0711",
- "KIN/YSM Human OFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Parietal Cerebral Wall": [
- [
- "KIN_YSM_PC_0711",
- "KIN/YSM Human PC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Phenotypes": [
@@ -489,67 +441,49 @@
"Posterior Inferior Parietal Cortex": [
[
"KIN_YSM_IPC_0711",
- "KIN/YSM Human IPC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Posterior Superior Temporal Cortex": [
[
"KIN_YSM_STC_0711",
- "KIN/YSM Human STC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Primary Auditory (A1) Cortex": [
[
"KIN_YSM_A1C_0711",
- "KIN/YSM Human A1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Primary Motor (M1) Cortex": [
[
"KIN_YSM_M1C_0711",
- "KIN/YSM Human M1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Primary Somatosensory (S1) Cortex": [
[
"KIN_YSM_S1C_0711",
- "KIN/YSM Human S1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Primary Visual Cortex": [
[
"KIN_YSM_V1C_0711",
- "KIN/YSM Human V1C Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Striatum": [
[
"KIN_YSM_STR_0711",
- "KIN/YSM Human STR Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Temporal Cerebral Wall": [
- [
- "KIN_YSM_TC_0711",
- "KIN/YSM Human TC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Upper (Rostral) Rhombic Lip": [
- [
- "KIN_YSM_URL_0711",
- "KIN/YSM Human URL Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
- ]
- ],
- "Ventral Forebrain": [
- [
- "KIN_YSM_VF_0711",
- "KIN/YSM Human VF Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
],
"Ventrolateral Prefrontal Cortex": [
[
"KIN_YSM_VFC_0711",
- "KIN/YSM Human VFC Affy Hu-Exon 1.0 ST (Jul11) Quantile **"
+ "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile"
]
]
}
@@ -558,12 +492,8 @@
"Macaca-fasicularis": {
"Amygdala": [
[
- "INIA_MacFas_AMGc_RMA_0110",
- "INIA Macaca fasicularis Amygdala control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_AMGe_RMA_0110",
- "INIA Macaca fasicularis Amygdala ethanol (Jan10) RMA **"
+ "INIA_MacFas_AMG_RMA_0110",
+ "INIA Macaca fasicularis Amygdala (Jan10) RMA **"
]
],
"Brain": [
@@ -581,21 +511,13 @@
"Hippocampus": [
[
"INIA_MacFas_Hc_RMA_0110",
- "INIA Macaca fasicularis Hippocampus control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_He_RMA_0110",
- "INIA Macaca fasicularis Hippocampus ethanol (Jan10) RMA **"
+ "INIA Macaca fasicularis Hippocampus (Jan10) RMA **"
]
],
"Nucleus Accumbens": [
[
"INIA_MacFas_Ac_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_Ae_RMA_0110",
- "INIA Macaca fasicularis Nucleus Accumbens ethanol (Jan10) RMA **"
+ "INIA Macaca fasicularis Nucleus Accumbens (Jan10) RMA **"
]
],
"Phenotypes": [
@@ -607,11 +529,7 @@
"Prefrontal Cortex": [
[
"INIA_MacFas_Pf_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex control (Jan10) RMA **"
- ],
- [
- "INIA_MacFas_PfE_RMA_0110",
- "INIA Macaca fasicularis Prefrontal Cortex ethanol (Jan10) RMA **"
+ "INIA Macaca fasicularis Prefrontal Cortex (Jan10) RMA **"
]
]
}
@@ -630,12 +548,12 @@
"NCI Mammary LMT miRNA v2 (Apr09) RMA"
],
[
- "MA_M_0704_R",
- "NCI Mammary mRNA M430 (July04) RMA"
- ],
- [
"MA_M_0704_M",
"NCI Mammary mRNA M430 (July04) MAS5"
+ ],
+ [
+ "MA_M_0704_R",
+ "NCI Mammary mRNA M430 (July04) RMA"
]
],
"Phenotypes": [
@@ -658,6 +576,12 @@
"AXBXA Genotypes"
]
],
+ "Liver": [
+ [
+ "GSE16780AB_UCLA_ML0911",
+ "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA"
+ ]
+ ],
"Phenotypes": [
[
"AXBXAPublish",
@@ -674,12 +598,12 @@
],
"Liver": [
[
- "LVF2_M_0704_R",
- "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
- ],
- [
"LVF2_M_0704_M",
"(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5"
+ ],
+ [
+ "LVF2_M_0704_R",
+ "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA"
]
],
"Phenotypes": [
@@ -708,12 +632,12 @@
"OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN"
],
[
- "BRF2_M_0304_R",
- "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
- ],
- [
"BRF2_M_0304_M",
"OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5"
+ ],
+ [
+ "BRF2_M_0304_R",
+ "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA"
]
],
"Genotypes": [
@@ -729,6 +653,46 @@
]
]
},
+ "B6D2F2-PSU": {
+ "Genotypes": [
+ [
+ "B6D2F2-PSUGeno",
+ "B6D2F2-PSU Genotypes"
+ ]
+ ],
+ "Muscle": [
+ [
+ "PSU-B6D2F2_0812",
+ "PSU B6D2F2 Muscle Affy Mouse Genome 430 2.0 (Aug12) RMA **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6D2F2-PSUPublish",
+ "B6D2F2-PSU Published Phenotypes"
+ ]
+ ]
+ },
+ "B6D2RI": {
+ "Genotypes": [
+ [
+ "B6D2RIGeno",
+ "B6D2RI Genotypes"
+ ]
+ ],
+ "Hippocampus": [
+ [
+ "UTHSC_B6D2RI_H_0912",
+ "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA **"
+ ]
+ ],
+ "Phenotypes": [
+ [
+ "B6D2RIPublish",
+ "B6D2RI Published Phenotypes"
+ ]
+ ]
+ },
"BDF2-1999": {
"Genotypes": [
[
@@ -764,44 +728,44 @@
],
"Striatum": [
[
- "SA_M2_0905_R",
- "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
- ],
- [
"SA_M2_0905_M",
"OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5"
],
[
"SA_M2_0905_P",
"OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN"
+ ],
+ [
+ "SA_M2_0905_R",
+ "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA"
]
]
},
"BHF2": {
"Adipose": [
[
- "UCLA_BHF2_ADIPOSE_MALE",
- "UCLA BHF2 Adipose Male mlratio"
- ],
- [
"UCLA_BHF2_ADIPOSE_FEMALE",
"UCLA BHF2 Adipose Female mlratio"
],
[
+ "UCLA_BHF2_ADIPOSE_MALE",
+ "UCLA BHF2 Adipose Male mlratio"
+ ],
+ [
"UCLA_BHF2_ADIPOSE_0605",
"UCLA BHF2 Adipose (June05) mlratio"
]
],
"Brain": [
[
- "UCLA_BHF2_BRAIN_MALE",
- "UCLA BHF2 Brain Male mlratio"
- ],
- [
"UCLA_BHF2_BRAIN_FEMALE",
"UCLA BHF2 Brain Female mlratio"
],
[
+ "UCLA_BHF2_BRAIN_MALE",
+ "UCLA BHF2 Brain Male mlratio"
+ ],
+ [
"UCLA_BHF2_BRAIN_0605",
"UCLA BHF2 Brain (June05) mlratio"
]
@@ -814,28 +778,28 @@
],
"Liver": [
[
- "UCLA_BHF2_LIVER_MALE",
- "UCLA BHF2 Liver Male mlratio"
- ],
- [
"UCLA_BHF2_LIVER_FEMALE",
"UCLA BHF2 Liver Female mlratio"
],
[
+ "UCLA_BHF2_LIVER_MALE",
+ "UCLA BHF2 Liver Male mlratio"
+ ],
+ [
"UCLA_BHF2_LIVER_0605",
"UCLA BHF2 Liver (June05) mlratio"
]
],
"Muscle": [
[
- "UCLA_BHF2_MUSCLE_MALE",
- "UCLA BHF2 Muscle Male mlratio **"
- ],
- [
"UCLA_BHF2_MUSCLE_FEMALE",
"UCLA BHF2 Muscle Female mlratio **"
],
[
+ "UCLA_BHF2_MUSCLE_MALE",
+ "UCLA BHF2 Muscle Male mlratio **"
+ ],
+ [
"UCLA_BHF2_MUSCLE_0605",
"UCLA BHF2 Muscle (June05) mlratio **"
]
@@ -850,30 +814,30 @@
"BHHBF2": {
"Adipose": [
[
+ "UCLA_BHHBF2_ADIPOSE_2005",
+ "UCLA BHHBF2 Adipose (2005) mlratio"
+ ],
+ [
"UCLA_BHHBF2_ADIPOSE_MALE",
"UCLA BHHBF2 Adipose Male Only"
],
[
"UCLA_BHHBF2_ADIPOSE_FEMALE",
"UCLA BHHBF2 Adipose Female Only"
- ],
- [
- "UCLA_BHHBF2_ADIPOSE_2005",
- "UCLA BHHBF2 Adipose (2005) mlratio **"
]
],
"Brain": [
[
+ "UCLA_BHHBF2_BRAIN_2005",
+ "UCLA BHHBF2 Brain (2005) mlratio"
+ ],
+ [
"UCLA_BHHBF2_BRAIN_MALE",
"UCLA BHHBF2 Brain Male Only"
],
[
"UCLA_BHHBF2_BRAIN_FEMALE",
"UCLA BHHBF2 Brain Female Only"
- ],
- [
- "UCLA_BHHBF2_BRAIN_2005",
- "UCLA BHHBF2 Brain (2005) mlratio **"
]
],
"Genotypes": [
@@ -884,30 +848,30 @@
],
"Liver": [
[
+ "UCLA_BHHBF2_LIVER_2005",
+ "UCLA BHHBF2 Liver (2005) mlratio"
+ ],
+ [
"UCLA_BHHBF2_LIVER_MALE",
"UCLA BHHBF2 Liver Male Only"
],
[
"UCLA_BHHBF2_LIVER_FEMALE",
"UCLA BHHBF2 Liver Female Only"
- ],
- [
- "UCLA_BHHBF2_LIVER_2005",
- "UCLA BHHBF2 Liver (2005) mlratio **"
]
],
"Muscle": [
[
+ "UCLA_BHHBF2_MUSCLE_2005",
+ "UCLA BHHBF2 Muscle (2005) mlratio"
+ ],
+ [
"UCLA_BHHBF2_MUSCLE_MALE",
"UCLA BHHBF2 Muscle Male Only"
],
[
"UCLA_BHHBF2_MUSCLE_FEMALE",
"UCLA BHHBF2 Muscle Female Only"
- ],
- [
- "UCLA_BHHBF2_MUSCLE_2005",
- "UCLA BHHBF2 Muscle (2005) mlratio **"
]
],
"Phenotypes": [
@@ -918,6 +882,16 @@
]
},
"BXD": {
+ "Adrenal Gland": [
+ [
+ "INIA_Adrenal_RMA_0612",
+ "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA"
+ ],
+ [
+ "INIA_Adrenal_RMA_Ex_0612",
+ "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level"
+ ]
+ ],
"Amygdala": [
[
"INIA_AmgCoh_0311",
@@ -934,6 +908,10 @@
[
"INIA_Amg_BLA_RMA_F_1110",
"INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female"
+ ],
+ [
+ "INIA_Amg_BLA_Ex-RMA_1110",
+ "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA"
]
],
"Brain": [
@@ -946,10 +924,6 @@
"UTHSC Brain mRNA U74Av2 (Nov05) PDNN"
],
[
- "BR_U_0805_M",
- "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
- ],
- [
"BR_U_0805_R",
"UTHSC Brain mRNA U74Av2 (Aug05) RMA"
],
@@ -958,6 +932,10 @@
"UTHSC Brain mRNA U74Av2 (Aug05) PDNN"
],
[
+ "BR_U_0805_M",
+ "UTHSC Brain mRNA U74Av2 (Aug05) MAS5"
+ ],
+ [
"CB_M_0204_P",
"INIA Brain mRNA M430 (Feb04) PDNN"
]
@@ -978,10 +956,6 @@
],
"Cerebellum": [
[
- "CB_M_1004_M",
- "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
- ],
- [
"CB_M_1004_R",
"SJUT Cerebellum mRNA M430 (Oct04) RMA"
],
@@ -990,6 +964,10 @@
"SJUT Cerebellum mRNA M430 (Oct04) PDNN"
],
[
+ "CB_M_1004_M",
+ "SJUT Cerebellum mRNA M430 (Oct04) MAS5"
+ ],
+ [
"CB_M_1003_M",
"SJUT Cerebellum mRNA M430 (Oct03) MAS5"
]
@@ -1000,6 +978,10 @@
"Eye M430v2 (Sep08) RMA"
],
[
+ "gn10",
+ "Eye M430v2 No Mutant/Mutant (Aug12) RMA **"
+ ],
+ [
"Eye_M2_0908_R_NB",
"Eye M430v2 Mutant Gpnmb (Sep08) RMA **"
],
@@ -1008,14 +990,14 @@
"Eye M430v2 WT Gpnmb (Sep08) RMA **"
],
[
- "Eye_M2_0908_WTWT",
- "Eye M430v2 WT WT (Sep08) RMA **"
- ],
- [
"Eye_M2_0908_R_MT",
"Eye M430v2 Mutant Tyrp1 (Sep08) RMA **"
],
[
+ "Eye_M2_0908_WTWT",
+ "Eye M430v2 WT WT (Sep08) RMA **"
+ ],
+ [
"Eye_M2_0908_R_WT",
"Eye M430v2 WT Tyrp1 (Sep08) RMA **"
],
@@ -1104,6 +1086,14 @@
[
"UT_ILM_BXD_hipp_RSE_0909",
"UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv"
+ ],
+ [
+ "UTHSC_BXD_HArev3_0912",
+ "UTHSC BXD Aged Hippocampus rev3 Affy Mouse Gene 1.0 ST (Sep12) RMA **"
+ ],
+ [
+ "UTHSC_BXD_H_0912",
+ "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA Exon Level **"
]
],
"Hypothalamus": [
@@ -1118,6 +1108,10 @@
[
"INIA_Hyp_F_RMA_1110",
"INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female"
+ ],
+ [
+ "INIA_Hyp_RMA_Ex-1110",
+ "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)"
]
],
"Kidney": [
@@ -1138,12 +1132,12 @@
"Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN"
],
[
- "MA_M2_0706_P",
- "Mouse Kidney M430v2 (Jul06) PDNN"
- ],
- [
"MA_M2_0706_R",
"Mouse Kidney M430v2 (Jul06) RMA"
+ ],
+ [
+ "MA_M2_0706_P",
+ "Mouse Kidney M430v2 (Jul06) PDNN"
]
],
"Leucocytes": [
@@ -1158,6 +1152,18 @@
"GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA"
],
[
+ "GenEx_BXD_liverEt_M5_0912",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes **"
+ ],
+ [
+ "GenEx_BXD_liverEt_M5F_0912",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females **"
+ ],
+ [
+ "GenEx_BXD_liverEt_M5M_0912",
+ "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males **"
+ ],
+ [
"GenEx_BXD_liverSal_RMA_F_0211",
"GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females **"
],
@@ -1194,18 +1200,22 @@
[
"HZI_0408_M",
"HZI Lung M430v2 (Apr08) MAS5"
+ ],
+ [
+ "HZI_PR8M_Q_0612",
+ "HZI PR8M-Infected Lungs Agilent4x44 (Apr12) Quantile Females **"
]
],
"Midbrain": [
[
- "VUBXDMouseMidBrainQ0212",
- "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (Feb12) Quantile"
+ "VUBXDMouseMidBrainQ0512",
+ "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile **"
]
],
"Muscle": [
[
"EPFLMouseMuscleRMA1211",
- "EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
+ "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA **"
],
[
"EPFLMouseMuscleHFDRMA1211",
@@ -1218,12 +1228,12 @@
],
"Neocortex": [
[
- "DevNeocortex_ILM6.2P14RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv **"
+ "DevNeocortex_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv"
],
[
- "DevNeocortex_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv **"
+ "DevNeocortex_ILM6.2P14RInv_1111",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv"
],
[
"HQFNeoc_1210v2_RankInv",
@@ -1238,12 +1248,12 @@
"HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv"
],
[
- "DevNeocortex_ILM6.2P3RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv **"
+ "DevNeocortex_ILM6.2P14RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv"
],
[
- "DevNeocortex_ILM6.2P14RInv_1110",
- "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv **"
+ "DevNeocortex_ILM6.2P3RInv_1110",
+ "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv"
]
],
"Nucleus Accumbens": [
@@ -1266,12 +1276,24 @@
"BXD Published Phenotypes"
]
],
- "Prefrontal Cortex": [
+ "Pituitary Gland": [
[
- "VCUEtOH_1206_R",
- "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ "INIA_PG_RMA_0612",
+ "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA"
],
[
+ "INIA_PG_RMA_Ex_0612",
+ "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level"
+ ]
+ ],
+ "Popliteal Lymph Node": [
+ [
+ "STJ_PLN_0912",
+ "St Jude BXD Popliteal Lymph Node Affy HT MG-430 PM (Sep12) RMA **"
+ ]
+ ],
+ "Prefrontal Cortex": [
+ [
"VCUSal_1206_R",
"VCU BXD PFC Sal M430 2.0 (Dec06) RMA"
],
@@ -1280,6 +1302,10 @@
"VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore"
],
[
+ "VCUEtOH_1206_R",
+ "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA"
+ ],
+ [
"VCU_PF_Air_0111_R",
"VCU BXD PFC CIE Air M430 2.0 (Jan11) RMA **"
],
@@ -1294,16 +1320,20 @@
],
"Retina": [
[
- "Illum_Retina_BXD_RankInv0410",
- "HEI Retina Illumina V6.2 (April 2010) RankInv"
+ "G2NEI_ILM_Retina_BXD_RI0410",
+ "Normal HEI Retina (April 2010) RankInv"
],
[
- "B6D2ONCILM_0412",
- "B6D2 ONC Illumina v6.1 (Apr12) RankInv **"
+ "Illum_Retina_BXD_RankInv0410",
+ "Full HEI Retina (April 2010) RankInv"
],
[
"ONCRetILM6_0412",
- "ONC Retina Illumina V6.2 (Apr12) RankInv **"
+ "ONC HEI Retina (April 2012) RankInv"
+ ],
+ [
+ "B6D2ONCILM_0412",
+ "B6D2 ONC Retina (April 2012) RankInv **"
],
[
"HEIONCvsCRetILM6_0911",
@@ -1312,26 +1342,6 @@
[
"G2HEIONCRetILM6_0911",
"G2 HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "HEIONCRetILM6_0911",
- "HEI ONC Retina Illumina V6.2 (Sep11) RankInv **"
- ],
- [
- "ILM_Retina_BXD_F_RankInv1210",
- "HEI Retina Females Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_M_RankInv1210",
- "HEI Retina Males Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "ILM_Retina_BXD_FM_RankInv1210",
- "HEI Retina F-M Illumina V6.2 (Dec10) RankInv **"
- ],
- [
- "G2NEI_ILM_Retina_BXD_RI0410",
- "G2NEI Retina Illumina V6.2 (April 2010) RankInv **"
]
],
"Spleen": [
@@ -1340,32 +1350,40 @@
"UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA"
],
[
+ "UTHSC_SPL_RMA_1210M",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males"
+ ],
+ [
+ "UTHSC_SPL_RMA_1210F",
+ "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females"
+ ],
+ [
"UTHSC_SPL_RMA_1010",
"UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA"
],
[
+ "UTK_BXDSpl_VST_0110",
+ "UTK Spleen ILM6.1 (Jan10) VST"
+ ],
+ [
"IoP_SPL_RMA_0509",
"IoP Affy MOE 430v2 Spleen (May09) RMA"
],
[
"Illum_BXD_Spl_1108",
"UWA Illumina Spleen (Nov08) RSN **"
- ],
- [
- "UTK_BXDSpl_VST_0110",
- "UTK Spleen ILM6.1 (Jan10) VST"
]
],
"Striatum": [
[
- "DevStriatum_ILM6.2P3RInv_1111",
- "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
- ],
- [
"DevStriatum_ILM6.2P14RInv_1111",
"BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv **"
],
[
+ "DevStriatum_ILM6.2P3RInv_1111",
+ "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv **"
+ ],
+ [
"UTHSC_Striatum_RankInv_1210",
"HQF BXD Striatum ILM6.1 (Dec10v2) RankInv"
],
@@ -1430,16 +1448,16 @@
],
"Ventral Tegmental Area": [
[
- "VCUEtOH_0609_R",
- "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
- ],
- [
"VCUSal_0609_R",
"VCU BXD VTA Sal M430 2.0 (Jun09) RMA **"
],
[
"VCUEtvsSal_0609_R",
"VCU BXD VTA Et vs Sal M430 2.0 (Jun09) Sscore **"
+ ],
+ [
+ "VCUEtOH_0609_R",
+ "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA **"
]
]
},
@@ -1464,6 +1482,12 @@
"BXH Genotypes"
]
],
+ "Liver": [
+ [
+ "GSE16780BXH_UCLA_ML0911",
+ "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA"
+ ]
+ ],
"Phenotypes": [
[
"BXHPublish",
@@ -1474,30 +1498,30 @@
"CTB6F2": {
"Adipose": [
[
- "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
- "UCLA CTB6B6CTF2 Adipose Male mlratio **"
+ "UCLA_CTB6B6CTF2_ADIPOSE_2005",
+ "UCLA CTB6/B6CTF2 Adipose (2005) mlratio"
],
[
"UCLA_CTB6B6CTF2_ADIPOSE_FEMALE",
"UCLA CTB6B6CTF2 Adipose Female mlratio **"
],
[
- "UCLA_CTB6B6CTF2_ADIPOSE_2005",
- "UCLA CTB6/B6CTF2 Adipose (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_ADIPOSE_MALE",
+ "UCLA CTB6B6CTF2 Adipose Male mlratio **"
]
],
"Brain": [
[
- "UCLA_CTB6B6CTF2_BRAIN_MALE",
- "UCLA CTB6B6CTF2 Brain Male mlratio **"
+ "UCLA_CTB6B6CTF2_BRAIN_2005",
+ "UCLA CTB6/B6CTF2 Brain (2005) mlratio"
],
[
"UCLA_CTB6B6CTF2_BRAIN_FEMALE",
"UCLA CTB6B6CTF2 Brain Female mlratio **"
],
[
- "UCLA_CTB6B6CTF2_BRAIN_2005",
- "UCLA CTB6/B6CTF2 Brain (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_BRAIN_MALE",
+ "UCLA CTB6B6CTF2 Brain Male mlratio **"
]
],
"Genotypes": [
@@ -1508,30 +1532,30 @@
],
"Liver": [
[
- "UCLA_CTB6B6CTF2_LIVER_MALE",
- "UCLA CTB6B6CTF2 Liver Male mlratio **"
+ "UCLA_CTB6B6CTF2_LIVER_2005",
+ "UCLA CTB6/B6CTF2 Liver (2005) mlratio"
],
[
"UCLA_CTB6B6CTF2_LIVER_FEMALE",
"UCLA CTB6B6CTF2 Liver Female mlratio **"
],
[
- "UCLA_CTB6B6CTF2_LIVER_2005",
- "UCLA CTB6/B6CTF2 Liver (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_LIVER_MALE",
+ "UCLA CTB6B6CTF2 Liver Male mlratio **"
]
],
"Muscle": [
[
- "UCLA_CTB6B6CTF2_MUSCLE_MALE",
- "UCLA CTB6B6CTF2 Muscle Male mlratio **"
+ "UCLA_CTB6B6CTF2_MUSCLE_2005",
+ "UCLA CTB6/B6CTF2 Muscle (2005) mlratio"
],
[
"UCLA_CTB6B6CTF2_MUSCLE_FEMALE",
"UCLA CTB6B6CTF2 Muscle Female mlratio **"
],
[
- "UCLA_CTB6B6CTF2_MUSCLE_2005",
- "UCLA CTB6/B6CTF2 Muscle (2005) mlratio **"
+ "UCLA_CTB6B6CTF2_MUSCLE_MALE",
+ "UCLA CTB6B6CTF2 Muscle Male mlratio **"
]
],
"Phenotypes": [
@@ -1550,12 +1574,12 @@
],
"Hippocampus": [
[
- "HC_M2CB_1205_R",
- "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
- ],
- [
"HC_M2CB_1205_P",
"Hippocampus Consortium M430v2 CXB (Dec05) PDNN"
+ ],
+ [
+ "HC_M2CB_1205_R",
+ "Hippocampus Consortium M430v2 CXB (Dec05) RMA"
]
],
"Phenotypes": [
@@ -1660,10 +1684,6 @@
"Hippocampus Illumina (May07) RankInv"
],
[
- "Illum_LXS_Hipp_NON_1008",
- "Hippocampus Illumina NON (Oct08) RankInv beta"
- ],
- [
"Illum_LXS_Hipp_RSE_1008",
"Hippocampus Illumina RSE (Oct08) RankInv beta"
],
@@ -1678,6 +1698,10 @@
[
"Illum_LXS_Hipp_NOS_1008",
"Hippocampus Illumina NOS (Oct08) RankInv beta"
+ ],
+ [
+ "Illum_LXS_Hipp_NON_1008",
+ "Hippocampus Illumina NON (Oct08) RankInv beta"
]
],
"Phenotypes": [
@@ -1688,16 +1712,16 @@
],
"Prefrontal Cortex": [
[
- "VCUEtOH_0806_R",
- "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
- ],
- [
"VCUSal_0806_R",
"VCU LXS PFC Sal M430A 2.0 (Aug06) RMA"
],
[
"VCUEt_vs_Sal_0806_R",
"VCU LXS PFC Et vs Sal M430A 2.0 (Aug06) Sscore **"
+ ],
+ [
+ "VCUEtOH_0806_R",
+ "VCU LXS PFC EtOH M430A 2.0 (Aug06) RMA **"
]
]
},
@@ -1710,16 +1734,20 @@
],
"Hippocampus": [
[
- "UMUTAffyExon_0209_RMA_MDP",
- "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
- ],
- [
"HC_M2_0606_MDP",
"Hippocampus Consortium M430v2 (Jun06) RMA MDP"
+ ],
+ [
+ "UMUTAffyExon_0209_RMA_MDP",
+ "UMUTAffy Hippocampus Exon (Feb09) RMA MDP"
]
],
"Liver": [
[
+ "GSE16780MDP_UCLA_ML0911",
+ "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA"
+ ],
+ [
"JAX_CSB_L_0711",
"JAX Liver Affy M430 2.0 (Jul11) MDP"
],
@@ -1921,19 +1949,19 @@
"human": [
[
"AD-cases-controls",
- "AD Cases & Controls (Liang)"
+ "Alzheimer's Disease Brain (Liang)"
],
[
"AD-cases-controls-Myers",
- "AD Cases & Controls (Myers)"
+ "Alzheimer's Disease Brain (Myers)"
],
[
"CANDLE",
- "CANDLE"
+ "CANDLE Cognitive Development (TUCI)"
],
[
"CEPH-2004",
- "CEPH Families"
+ "CEPH Families Cell Lines"
],
[
"HB",
@@ -1941,11 +1969,11 @@
],
[
"HLC",
- "Human Liver Cohort"
+ "Human Liver Cohort (Merck)"
],
[
"HSB",
- "KIN/YSM"
+ "Human Brain Transcriptome (Yale/Kavli)"
]
],
"macaque monkey": [
@@ -1972,6 +2000,14 @@
"B6D2F2"
],
[
+ "B6D2F2-PSU",
+ "B6D2F2 PSU"
+ ],
+ [
+ "B6D2RI",
+ "B6D2RI Aged"
+ ],
+ [
"BDF2-1999",
"BDF2 UCLA"
],
@@ -2301,30 +2337,14 @@
"Amygdala mRNA"
],
[
- "Caudal Ganglionic Eminence",
- "Caudal Ganglionic Eminence mRNA"
- ],
- [
"Cerebellar Cortex",
"Cerebellar Cortex mRNA"
],
[
- "Diencephalon",
- "Diencephalon mRNA"
- ],
- [
- "Dorsal Thalamus",
- "Dorsal Thalamus mRNA"
- ],
- [
"Dorsolateral Prefrontal Cortex",
"Dorsolateral Prefrontal Cortex mRNA"
],
[
- "Frontal Cerebral Wall",
- "Frontal Cerebral Wall mRNA"
- ],
- [
"Hippocampus",
"Hippocampus mRNA"
],
@@ -2333,14 +2353,6 @@
"Inferior Temporal Cortex mRNA"
],
[
- "Lateral Ganglionic Eminence",
- "Lateral Ganglionic Eminence mRNA"
- ],
- [
- "Medial Ganglionic Eminence",
- "Medial Ganglionic Eminence mRNA"
- ],
- [
"Medial Prefrontal Cortex",
"Medial Prefrontal Cortex mRNA"
],
@@ -2349,18 +2361,10 @@
"Mediodorsal Nucleus of Thalamus mRNA"
],
[
- "Occipital Cerebral Wall",
- "Occipital Cerebral Wall mRNA"
- ],
- [
"Orbital Prefrontal Cortex",
"Orbital Prefrontal Cortex mRNA"
],
[
- "Parietal Cerebral Wall",
- "Parietal Cerebral Wall mRNA"
- ],
- [
"Posterior Inferior Parietal Cortex",
"Posterior Inferior Parietal Cortex mRNA"
],
@@ -2389,18 +2393,6 @@
"Striatum mRNA"
],
[
- "Temporal Cerebral Wall",
- "Temporal Cerebral Wall mRNA"
- ],
- [
- "Upper (Rostral) Rhombic Lip",
- "Upper (Rostral) Rhombic Lip mRNA"
- ],
- [
- "Ventral Forebrain",
- "Ventral Forebrain mRNA"
- ],
- [
"Ventrolateral Prefrontal Cortex",
"Ventrolateral Prefrontal Cortex mRNA"
]
@@ -2465,6 +2457,10 @@
[
"Eye",
"Eye mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
]
],
"B6BTBRF2": [
@@ -2495,6 +2491,34 @@
"Brain mRNA"
]
],
+ "B6D2F2-PSU": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Muscle",
+ "Muscle mRNA"
+ ]
+ ],
+ "B6D2RI": [
+ [
+ "Phenotypes",
+ "Phenotypes"
+ ],
+ [
+ "Genotypes",
+ "Genotypes"
+ ],
+ [
+ "Hippocampus",
+ "Hippocampus mRNA"
+ ]
+ ],
"BDF2-1999": [
[
"Phenotypes",
@@ -2585,6 +2609,10 @@
"Genotypes"
],
[
+ "Adrenal Gland",
+ "Adrenal Gland mRNA"
+ ],
+ [
"Amygdala",
"Amygdala mRNA"
],
@@ -2649,6 +2677,14 @@
"Nucleus Accumbens mRNA"
],
[
+ "Pituitary Gland",
+ "Pituitary Gland mRNA"
+ ],
+ [
+ "Popliteal Lymph Node",
+ "Popliteal Lymph Node mRNA"
+ ],
+ [
"Prefrontal Cortex",
"Prefrontal Cortex mRNA"
],
@@ -2693,6 +2729,10 @@
[
"Cartilage",
"Cartilage mRNA"
+ ],
+ [
+ "Liver",
+ "Liver mRNA"
]
],
"CTB6F2": [
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-23 05:03:42 +0000