2 files changed, 79 insertions, 0 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/gn2.py b/wqflask/wqflask/my_pylmm/pyLMM/gn2.py
new file mode 100644
index 00000000..e0c6c8a7
--- /dev/null
+++ b/wqflask/wqflask/my_pylmm/pyLMM/gn2.py
@@ -0,0 +1,38 @@
+# Genenetwork2 specific methods and callback handler
+#
+# Copyright (C) 2015  Pjotr Prins (pjotr.prins@thebird.nl)
+#
+
+from __future__ import absolute_import, print_function, division
+
+import sys
+import logging
+
+# logging.basicConfig(level=logging.DEBUG)
+
+def progress(location, count, total):
+    print("Progress: %s %i %i @%d%%" % (location,count,total,round(count*100.0/total)))
+
+def callbacks():
+    return dict(
+        write = sys.stdout.write,
+        writeln = print,
+        debug = logging.debug,
+        info = logging.info,
+        warning = logging.warning,
+        error = logging.error,
+        critical = logging.critical,
+        progress = progress
+    )
+    
+# ----- Minor test cases:
+
+if __name__ == '__main__':
+    logging.basicConfig(level=logging.DEBUG)
+    logging.debug("Test %i" % (1))
+    d = callbacks()['debug']
+    d("TEST")
+    wrln = callbacks()['writeln']
+    wrln("Hello %i" % 34)
+    progress = callbacks()['progress']
+    progress("I am half way",50,100)
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/standalone.py b/wqflask/wqflask/my_pylmm/pyLMM/standalone.py
new file mode 100644
index 00000000..a806729e
--- /dev/null
+++ b/wqflask/wqflask/my_pylmm/pyLMM/standalone.py
@@ -0,0 +1,41 @@
+# Standalone specific methods and callback handler
+#
+# Copyright (C) 2015  Pjotr Prins (pjotr.prins@thebird.nl)
+#
+# Set the log level with
+#
+#   logging.basicConfig(level=logging.DEBUG)
+
+from __future__ import absolute_import, print_function, division
+
+import sys
+import logging
+
+logging.basicConfig(level=logging.DEBUG)
+
+def progress(location, count, total):
+    logging.info("Progress: %s %i %i @%d%%" % (location,count,total,round(count*100.0/total)))
+
+def callbacks():
+    return dict(
+        write = sys.stdout.write,
+        writeln = print,
+        debug = logging.debug,
+        info = logging.info,
+        warning = logging.warning,
+        error = logging.error,
+        critical = logging.critical,
+        progress = progress
+    )
+    
+# ----- Minor test cases:
+
+if __name__ == '__main__':
+    # logging.basicConfig(level=logging.DEBUG)
+    logging.debug("Test %i" % (1))
+    d = callbacks()['debug']
+    d("TEST")
+    wrln = callbacks()['writeln']
+    wrln("Hello %i" % 34)
+    progress = callbacks()['progress']
+    progress("I am half way",50,100)