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-rw-r--r--wqflask/maintenance/dataset/load_phenotypes.py17
1 files changed, 10 insertions, 7 deletions
diff --git a/wqflask/maintenance/dataset/load_phenotypes.py b/wqflask/maintenance/dataset/load_phenotypes.py
index 274b8593..e5a85b32 100644
--- a/wqflask/maintenance/dataset/load_phenotypes.py
+++ b/wqflask/maintenance/dataset/load_phenotypes.py
@@ -4,22 +4,25 @@ import csv
import utilities
def main(argv):
- #
+ # config
config = utilities.get_config(argv[1])
print "config:"
for item in config.items('config'):
print "\t%s" % (str(item))
#
+ inbredsetid = config.get('config', 'inbredsetid')
+ print "inbredsetid: %s" % inbredsetid
+ # datafile
datafile = open(config.get('config', 'datafile'), 'r')
phenotypedata = csv.reader(datafile, delimiter='\t', quotechar='"')
- for row in phenotypedata:
- #print row
- pass
- #
+ phenotypedata_head = phenotypedata.next()
+ print "phenotypedata head:\n\t%s" % phenotypedata_head
+ # metafile
metafile = open(config.get('config', 'metafile'), 'r')
phenotypemeta = csv.reader(metafile, delimiter='\t', quotechar='"')
- for row in phenotypemeta:
- print row[1]
+ phenotypemeta_head = phenotypemeta.next()
+ print "phenotypemeta head:\n\t%s" % phenotypemeta_head
+ #
if __name__ == "__main__":
print "command line arguments:\n\t%s" % sys.argv