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-rw-r--r--wqflask/wqflask/marker_regression/gemma_mapping.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/gemma_mapping.py b/wqflask/wqflask/marker_regression/gemma_mapping.py
index 5b34e837..3d3f26f3 100644
--- a/wqflask/wqflask/marker_regression/gemma_mapping.py
+++ b/wqflask/wqflask/marker_regression/gemma_mapping.py
@@ -214,7 +214,7 @@ def parse_loco_output(this_dataset, gwa_output_filename):
else:
marker = {}
marker['name'] = line.split("\t")[1]
- if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y":
+ if line.split("\t")[0] != "X" and line.split("\t")[0] != "X/Y" and line.split("\t")[0] != "Y" and line.split("\t")[0] != "M":
if "chr" in line.split("\t")[0]:
marker['chr'] = int(line.split("\t")[0][3:])
else: