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-rw-r--r--wqflask/wqflask/marker_regression/marker_regression.py12
1 files changed, 7 insertions, 5 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py
index 09dd7852..6d996bd3 100644
--- a/wqflask/wqflask/marker_regression/marker_regression.py
+++ b/wqflask/wqflask/marker_regression/marker_regression.py
@@ -1025,12 +1025,14 @@ def trim_markers_for_table(markers):
sorted_markers = sorted(markers, key=lambda k: k['lod_score'], reverse=True)
else:
sorted_markers = sorted(markers, key=lambda k: k['lrs_value'], reverse=True)
- trimmed_sorted_markers = sorted_markers[:int(len(sorted_markers) * 0.001)]
-
- if len(trimmed_sorted_markers) < 50:
- return sorted_markers
- else:
+
+ #ZS: So we end up with a list of just 200 markers
+ if len(sorted_markers) >= 200:
+ trimming_factor = 200 / len(sorted_markers)
+ trimmed_sorted_markers = sorted_markers[:int(len(sorted_markers) * trimming_factor)]
return trimmed_sorted_markers
+ else:
+ return sorted_markers
def get_markers_from_csv(included_markers, p_values, group_name):