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-rw-r--r--wqflask/wqflask/static/new/javascript/show_trait.js9
-rwxr-xr-xwqflask/wqflask/templates/show_trait_calculate_correlations.html16
-rwxr-xr-xwqflask/wqflask/templates/show_trait_details.html2
-rwxr-xr-xwqflask/wqflask/templates/show_trait_statistics.html4
4 files changed, 15 insertions, 16 deletions
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js
index 9e249c28..2fa77ae0 100644
--- a/wqflask/wqflask/static/new/javascript/show_trait.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait.js
@@ -296,18 +296,17 @@
};
on_corr_method_change = function() {
var corr_method;
- console.log("in beginning of on_corr_method_change");
- corr_method = $('select[name=corr_method]').val();
+ corr_method = $('select[name=corr_type]').val();
console.log("corr_method is:", corr_method);
$('.correlation_desc').hide();
$('#' + corr_method + "_r_desc").show().effect("highlight");
if (corr_method === "lit") {
- return $("#corr_sample_method_options").hide();
+ return $("#corr_sample_method").hide();
} else {
- return $("#corr_sample_method_options").show();
+ return $("#corr_sample_method").show();
}
};
- $('select[name=corr_method]').change(on_corr_method_change);
+ $('select[name=corr_type]').change(on_corr_method_change);
submit_special = function(url) {
$("#trait_data_form").attr("action", url);
diff --git a/wqflask/wqflask/templates/show_trait_calculate_correlations.html b/wqflask/wqflask/templates/show_trait_calculate_correlations.html
index ed58b32c..80fafa5e 100755
--- a/wqflask/wqflask/templates/show_trait_calculate_correlations.html
+++ b/wqflask/wqflask/templates/show_trait_calculate_correlations.html
@@ -63,7 +63,7 @@
</div>
</div>
- <div class="form-group">
+ <div id="corr_sample_method" class="form-group">
<label for="corr_sample_method" class="col-xs-1 control-label">Type</label>
<div class="col-xs-2 controls">
<select name="corr_sample_method" class="form-control">
@@ -112,30 +112,30 @@
<label for="descriptions" class="col-xs-1 control-label"></label>
<div class="col-xs-6 controls">
<span id="sample_r_desc" class="correlation_desc fs12">
- The <a href="/correlationAnnotation.html#sample_r" target="_blank">Sample Correlation</a>
+ The <a href="http://genenetwork.org/correlationAnnotation.html#genetic_r">Sample Correlation</a>
is computed
between trait data and any
other traits in the sample database selected above. Use
- <a href="/glossary.html#Correlations" target="_blank">Spearman
+ <a href="http://www.genenetwork.org/glossary.html#Correlations">Spearman
Rank</a>
when the sample size is small (&lt;20) or when there are influential outliers.
</span>
<span id="lit_r_desc" style="display: none;" class="correlation_desc fs12">
- The <a href="/correlationAnnotation.html" target="_blank">Literature Correlation</a>
+ The <a href="http://genenetwork.org/correlationAnnotation.html#literatureCorr">Literature Correlation</a>
(Lit r) between
this gene and all other genes is computed<br>
- using the <a href="https://grits.eecs.utk.edu/sgo/sgo.html" target="_blank">
+ using the <a href="https://grits.eecs.utk.edu/sgo/sgo.html">
Semantic Gene Organizer</a>
and human, rat, and mouse data from PubMed.
Values are ranked by Lit r, but Sample r and Tissue r are also displayed.<br>
- <a href="/glossary.html#Literature" target="_blank">More on using Lit r</a>
+ <a href="http://genenetwork.org/glossary.html#Literature">More on using Lit r</a>
</span>
<span id="tissue_r_desc" style="display: none;" class="correlation_desc fs12">
- The <a href="/webqtl/main.py?FormID=tissueCorrelation" target="_blank">Tissue Correlation</a>
+ The <a href="http://genenetwork.org/webqtl/main.py?FormID=tissueCorrelation">Tissue Correlation</a>
(Tissue r)
estimates the similarity of expression of two genes
or transcripts across different cells, tissues, or organs
- (<a href="/correlationAnnotation.html#tissue_r" target="_blank">glossary</a>).
+ (<a href="http://genenetwork.org/correlationAnnotation.html#tissueCorr">glossary</a>).
Tissue correlations
are generated by analyzing expression in multiple samples usually taken from single cases.<br>
<strong>Pearson</strong> and <strong>Spearman Rank</strong> correlations have been
diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html
index ccb3b51b..95a3b967 100755
--- a/wqflask/wqflask/templates/show_trait_details.html
+++ b/wqflask/wqflask/templates/show_trait_details.html
@@ -26,7 +26,7 @@
<tr>
<td>Database</td>
<td>
- <a href="{{ url_for('static', filename='dbdoc/' + dataset.fullname + '.html') }}" target="_blank">
+ <a href="http://genenetwork.org/dbdoc/{{ dataset.name }}.html">
{{ dataset.fullname }}
</a>
</td>
diff --git a/wqflask/wqflask/templates/show_trait_statistics.html b/wqflask/wqflask/templates/show_trait_statistics.html
index 242f1c26..3ee8bdea 100755
--- a/wqflask/wqflask/templates/show_trait_statistics.html
+++ b/wqflask/wqflask/templates/show_trait_statistics.html
@@ -108,8 +108,8 @@
</div>
<div>
- More about <a href="http://en.wikipedia.org/wiki/Normal_probability_plot" target="_blank">Normal Probability Plots</a> and more
- about interpreting these plots from the <a href="/glossary.html#normal_probability" target="_blank">glossary</a>
+ More about <a href="http://en.wikipedia.org/wiki/Normal_probability_plot">Normal Probability Plots</a> and more
+ about interpreting these plots from the <a href="http://genenetwork.org/glossary.html#normal_probability">glossary</a>
</div>
</div>