diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/base/trait.py | 2 | ||||
| -rw-r--r-- | wqflask/utility/Plot.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation/show_corr_results.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/correlation_matrix/show_corr_matrix.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/heatmap/heatmap.py | 2 | ||||
| -rw-r--r-- | wqflask/wqflask/network_graph/network_graph.py | 2 |
7 files changed, 1 insertions, 13 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py index 8e11c11d..ecb9dcd9 100644 --- a/wqflask/base/trait.py +++ b/wqflask/base/trait.py @@ -403,7 +403,7 @@ def retrieve_trait_info(trait, dataset, get_qtl_info=False): Publication.Month, Publication.Year, PublishXRef.Sequence, Phenotype.Units, PublishXRef.comments FROM - PublishXRef, Publication, Phenotype, PublishFreeze + PublishXRef, Publication, Phenotype, PublishFreeze, InbredSet WHERE PublishXRef.Id = %s AND Phenotype.Id = PublishXRef.PhenotypeId AND diff --git a/wqflask/utility/Plot.py b/wqflask/utility/Plot.py index cce8435d..9bc84d22 100644 --- a/wqflask/utility/Plot.py +++ b/wqflask/utility/Plot.py @@ -35,8 +35,6 @@ import sys, os from numarray import linear_algebra as la from numarray import ones, array, dot, swapaxes -import reaper - import webqtlUtil import corestats from base import webqtlConfig diff --git a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py index 5d74dc9d..09d6b9cc 100644 --- a/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py +++ b/wqflask/wqflask/comparison_bar_chart/comparison_bar_chart.py @@ -35,8 +35,6 @@ import resource from pprint import pformat as pf -import reaper - from base.trait import create_trait from base import data_set from utility import webqtlUtil, helper_functions, corr_result_helpers diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py index bc2912f2..de7a1c0c 100644 --- a/wqflask/wqflask/correlation/show_corr_results.py +++ b/wqflask/wqflask/correlation/show_corr_results.py @@ -42,8 +42,6 @@ utils = importr("utils") from pprint import pformat as pf -import reaper - from base import webqtlConfig from utility.THCell import THCell from utility.TDCell import TDCell diff --git a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py index 2b9467d1..0ac94139 100644 --- a/wqflask/wqflask/correlation_matrix/show_corr_matrix.py +++ b/wqflask/wqflask/correlation_matrix/show_corr_matrix.py @@ -41,8 +41,6 @@ import rpy2.robjects as robjects from pprint import pformat as pf -import reaper - from utility.redis_tools import get_redis_conn Redis = get_redis_conn() THIRTY_DAYS = 60 * 60 * 24 * 30 diff --git a/wqflask/wqflask/heatmap/heatmap.py b/wqflask/wqflask/heatmap/heatmap.py index e82aa0ef..5098a184 100644 --- a/wqflask/wqflask/heatmap/heatmap.py +++ b/wqflask/wqflask/heatmap/heatmap.py @@ -19,8 +19,6 @@ import numpy as np from pprint import pformat as pf -import reaper - from base.trait import GeneralTrait from base import data_set from base import species diff --git a/wqflask/wqflask/network_graph/network_graph.py b/wqflask/wqflask/network_graph/network_graph.py index f41f3017..f61c40b4 100644 --- a/wqflask/wqflask/network_graph/network_graph.py +++ b/wqflask/wqflask/network_graph/network_graph.py @@ -40,8 +40,6 @@ import rpy2.robjects as robjects from pprint import pformat as pf -import reaper - from utility.THCell import THCell from utility.TDCell import TDCell from base.trait import create_trait |