diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/ctl/gn3_ctl_analysis.py | 25 |
1 files changed, 9 insertions, 16 deletions
diff --git a/wqflask/wqflask/ctl/gn3_ctl_analysis.py b/wqflask/wqflask/ctl/gn3_ctl_analysis.py index 71e96fc7..113764a7 100644 --- a/wqflask/wqflask/ctl/gn3_ctl_analysis.py +++ b/wqflask/wqflask/ctl/gn3_ctl_analysis.py @@ -1,5 +1,4 @@ import requests -from dataclasses import dataclass from utility import genofile_parser from utility.tools import GN3_LOCAL_URL @@ -9,15 +8,6 @@ from base.trait import create_trait from base.trait import retrieve_sample_data -@dataclass -class CtlDatabase: - """class for keeping track of ctl db data""" - - dataset: dict - - trait_db_list: list - - def parse_geno_data(dataset_group_name) ->dict: """function to parse geno file data""" genofile_location = locate(dataset.group.name + ".geno", "genotype") @@ -92,18 +82,17 @@ def run_ctl(requestform): """function to make an api call to gn3 and run ctl""" - CtlObj = CtlDatabase() - ctl_api = f"{GN3_LOCAL_URL}/api/ctl/run_ctl" form_data = parse_form_data(requestform) - pheno_data = parse_geno_data(CtlObj.dataset.group.name) + trait_db_list = form_data["trait_db_list"] + dataset = data_set.create_dataset(trait_db_list[0].split(":")[1]) + pheno_data = parse_geno_data(dataset.group.name) - geno_data = parse_phenotype_data(form_data["trait_db_list"]) + geno_data = parse_phenotype_data(trait_db_list) - # refactor below pheno_data["individuals"] = geno_data["individuals"] @@ -119,4 +108,8 @@ def run_ctl(requestform): # todo check for errors - return response.json() + response_data = response.json() + + print(">>>>>>>>>>>>>>>>>>>>>>",response_data) + + return "" |