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-rw-r--r--wqflask/base/data_set.py17
-rw-r--r--wqflask/base/trait.py103
-rw-r--r--wqflask/wqflask/search_results.py6
-rw-r--r--wqflask/wqflask/static/new/javascript/create_corr_matrix.js79
-rw-r--r--wqflask/wqflask/static/packages/bootstrap/css/non-responsive.css2
-rw-r--r--wqflask/wqflask/templates/correlation_matrix.html4
-rw-r--r--wqflask/wqflask/templates/correlation_page.html4
-rw-r--r--wqflask/wqflask/templates/search_result_page.html126
8 files changed, 229 insertions, 112 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index fddfce58..04436a2e 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -271,7 +271,8 @@ class DatasetGroup(object):
self.f1list = None
self.parlist = None
self.get_f1_parent_strains()
- #logger.debug("parents/f1s: {}:{}".format(self.parlist, self.f1list))
+
+ self.accession_id = self.get_accession_id()
self.species = webqtlDatabaseFunction.retrieve_species(self.name)
@@ -279,6 +280,20 @@ class DatasetGroup(object):
self.allsamples = None
self._datasets = None
+ def get_accession_id(self):
+ results = g.db.execute("""select InfoFiles.GN_AccesionId from InfoFiles, PublishFreeze, InbredSet where
+ InbredSet.Name = %s and
+ PublishFreeze.InbredSetId = InbredSet.Id and
+ InfoFiles.InfoPageName = PublishFreeze.Name and
+ PublishFreeze.public > 0 and
+ PublishFreeze.confidentiality < 1 order by
+ PublishFreeze.CreateTime desc""", (self.name)).fetchone()
+
+ if results != None:
+ return str(results[0])
+ else:
+ return "None"
+
def get_specified_markers(self, markers = []):
self.markers = HumanMarkers(self.name, markers)
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index 276c624a..8788d983 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -91,16 +91,27 @@ class GeneralTrait(object):
additive=self.additive
)
elif self.dataset.type == "Publish":
- return dict(name=self.name,
- dataset=self.dataset.name,
- description=self.description_display,
- authors=self.authors,
- pubmed_text=self.pubmed_text,
- pubmed_link=self.pubmed_link,
- lrs_score=self.LRS_score_repr,
- lrs_location=self.LRS_location_repr,
- additive=self.additive
- )
+ if self.pubmed_id:
+ return dict(name=self.name,
+ dataset=self.dataset.name,
+ description=self.description_display,
+ authors=self.authors,
+ pubmed_text=self.pubmed_text,
+ pubmed_link=self.pubmed_link,
+ lrs_score=self.LRS_score_repr,
+ lrs_location=self.LRS_location_repr,
+ additive=self.additive
+ )
+ else:
+ return dict(name=self.name,
+ dataset=self.dataset.name,
+ description=self.description_display,
+ authors=self.authors,
+ pubmed_text=self.pubmed_text,
+ lrs_score=self.LRS_score_repr,
+ lrs_location=self.LRS_location_repr,
+ additive=self.additive
+ )
elif self.dataset.type == "Geno":
return dict(name=self.name,
dataset=self.dataset.name,
@@ -109,6 +120,62 @@ class GeneralTrait(object):
else:
return dict()
+ def jsonable_table_row(self, index, search_type):
+ """Return a list suitable for json and intended to be displayed in a table
+
+ Actual turning into json doesn't happen here though"""
+
+ if self.dataset.type == "ProbeSet":
+ if self.mean == "":
+ mean = "N/A"
+ else:
+ mean = "%.3f" % round(float(self.additive), 2)
+ if self.additive == "":
+ additive = "N/A"
+ else:
+ additive = "%.3f" % round(float(self.additive), 2)
+ return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" value="{{ data_hmac(\'{}:{}\'.format(' + str(self.name) + ',' + self.dataset.name + ')) }}">',
+ index,
+ '<a href="/show_trait?trait_id='+str(self.name)+'&dataset='+self.dataset.name+'">'+str(self.name)+'</a>',
+ self.symbol,
+ self.description_display,
+ self.location_repr,
+ mean,
+ self.LRS_score_repr,
+ self.LRS_location_repr,
+ additive]
+ elif self.dataset.type == "Publish":
+ if self.additive == "":
+ additive = "N/A"
+ else:
+ additive = "%.2f" % round(float(self.additive), 2)
+ if self.pubmed_id:
+ return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" value="{{ data_hmac(\'{}:{}\'.format(' + str(self.name) + ',' + self.dataset.name + ')) }}">',
+ index,
+ '<a href="/show_trait?trait_id='+str(self.name)+'&dataset='+self.dataset.name+'">'+str(self.name)+'</a>',
+ self.description_display,
+ self.authors,
+ '<a href="' + self.pubmed_link + '">' + self.pubmed_text + '</href>',
+ self.LRS_score_repr,
+ self.LRS_location_repr,
+ additive]
+ else:
+ return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" value="{{ data_hmac(\'{}:{}\'.format(' + str(self.name) + ',' + self.dataset.name + ')) }}">',
+ index,
+ '<a href="/show_trait?trait_id='+str(self.name)+'&dataset='+self.dataset.name+'">'+str(self.name)+'</a>',
+ self.description_display,
+ self.authors,
+ self.pubmed_text,
+ self.LRS_score_repr,
+ self.LRS_location_repr,
+ additive]
+ elif self.dataset.type == "Geno":
+ return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" value="{{ data_hmac(\'{}:{}\'.format(' + str(self.name) + ',' + self.dataset.name + ')) }}">',
+ index,
+ '<a href="/show_trait?trait_id='+str(self.name)+'&dataset='+self.dataset.name+'">'+str(self.name)+'</a>',
+ self.location_repr]
+ else:
+ return dict()
def get_name(self):
stringy = ""
@@ -418,7 +485,7 @@ class GeneralTrait(object):
self.description_display = description_display
#XZ: trait_location_value is used for sorting
- trait_location_repr = 'N/A'
+ self.location_repr = 'N/A'
trait_location_value = 1000000
if self.chr and self.mb:
@@ -438,6 +505,18 @@ class GeneralTrait(object):
self.location_repr = 'Chr%s: %.6f' % (self.chr, float(self.mb))
self.location_value = trait_location_value
+ elif self.dataset.type == "Geno":
+ self.location_repr = 'N/A'
+ trait_location_value = 1000000
+
+ if self.chr and self.mb:
+ #Checks if the chromosome number can be cast to an int (i.e. isn't "X" or "Y")
+ #This is so we can convert the location to a number used for sorting
+ trait_location_value = convert_location_to_value(self.chr, self.mb)
+
+ #ZS: Put this in function currently called "convert_location_to_value"
+ self.location_repr = 'Chr%s: %.6f' % (self.chr, float(self.mb))
+ self.location_value = trait_location_value
if get_qtl_info:
#LRS and its location
@@ -459,7 +538,7 @@ class GeneralTrait(object):
logger.sql(query)
trait_qtl = g.db.execute(query).fetchone()
if trait_qtl:
- self.locus, self.lrs, self.pvalue, self.mean, self.additive= trait_qtl
+ self.locus, self.lrs, self.pvalue, self.mean, self.additive = trait_qtl
if self.locus:
query = """
select Geno.Chr, Geno.Mb from Geno, Species
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index a924c7c9..cae6868e 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -86,12 +86,13 @@ views.py).
"""
self.trait_list = []
+ json_trait_list = []
species = webqtlDatabaseFunction.retrieve_species(self.dataset.group.name)
# result_set represents the results for each search term; a search of
# "shh grin2b" would have two sets of results, one for each term
logger.debug("self.results is:", pf(self.results))
- for result in self.results:
+ for index, result in enumerate(self.results):
if not result:
continue
@@ -101,6 +102,9 @@ views.py).
trait_id = result[0]
this_trait = GeneralTrait(dataset=self.dataset, name=trait_id, get_qtl_info=True, get_sample_info=False)
self.trait_list.append(this_trait)
+ json_trait_list.append(this_trait.jsonable_table_row(index + 1))
+
+ self.json_trait_list = json.dumps(json_trait_list)
#def get_group_species_tree(self):
# self.species_groups = collections.default_dict(list)
diff --git a/wqflask/wqflask/static/new/javascript/create_corr_matrix.js b/wqflask/wqflask/static/new/javascript/create_corr_matrix.js
index adb91295..a34fc408 100644
--- a/wqflask/wqflask/static/new/javascript/create_corr_matrix.js
+++ b/wqflask/wqflask/static/new/javascript/create_corr_matrix.js
@@ -1,48 +1,47 @@
// Generated by CoffeeScript 1.8.0
-var get_data, get_options, root;
+// var get_data, get_options, root;
-root = typeof exports !== "undefined" && exports !== null ? exports : this;
+// root = typeof exports !== "undefined" && exports !== null ? exports : this;
-$(function() {
- var chartOpts, data, mychart;
- console.log("js_data:", js_data);
- chartOpts = get_options();
- data = get_data();
- console.log(data);
- return mychart = corr_matrix(data, chartOpts);
-});
+// $(function() {
+ // var chartOpts, data, mychart;
+ // console.log("js_data:", js_data);
+ // chartOpts = get_options();
+ // data = get_data();
+ // console.log(data);
+ // return mychart = corr_matrix(data, chartOpts);
+// });
-get_options = function() {
- var chartOpts;
- chartOpts = {
- cortitle: "Correlation Matrix",
- scattitle: "Scatterplot",
- h: 450,
- w: 450,
- margin: {
- left: 100,
- top: 40,
- right: 5,
- bottom: 70,
- inner: 5
- }
- };
- return chartOpts;
-};
-
-get_data = function() {
- var data;
- data = {};
- data["var"] = js_data.traits;
- data.group = js_data.groups;
- data.indID = js_data.samples;
- data.dat = js_data.sample_data;
- data.corr = js_data.corr_results;
- data.cols = js_data.cols;
- data.rows = js_data.rows;
- return data;
-};
+// get_options = function() {
+ // var chartOpts;
+ // chartOpts = {
+ // cortitle: "Correlation Matrix",
+ // scattitle: "Scatterplot",
+ // h: 450,
+ // w: 450,
+ // margin: {
+ // left: 100,
+ // top: 40,
+ // right: 5,
+ // bottom: 70,
+ // inner: 5
+ // }
+ // };
+ // return chartOpts;
+// };
+// get_data = function() {
+ // var data;
+ // data = {};
+ // data["var"] = js_data.traits;
+ // data.group = js_data.groups;
+ // data.indID = js_data.samples;
+ // data.dat = js_data.sample_data;
+ // data.corr = js_data.corr_results;
+ // data.cols = js_data.cols;
+ // data.rows = js_data.rows;
+ // return data;
+// };
var neg_color_scale = chroma.scale(['#FF0000', 'white']).domain([-1, -0.4]);
var pos_color_scale = chroma.scale(['white', 'aqua']).domain([0.4, 1])
diff --git a/wqflask/wqflask/static/packages/bootstrap/css/non-responsive.css b/wqflask/wqflask/static/packages/bootstrap/css/non-responsive.css
index 076b6dae..9da73a8f 100644
--- a/wqflask/wqflask/static/packages/bootstrap/css/non-responsive.css
+++ b/wqflask/wqflask/static/packages/bootstrap/css/non-responsive.css
@@ -28,7 +28,7 @@ body {
/* Reset the container */
.container {
- width: 1200px;
+ width: 1400px;
max-width: none !important;
}
diff --git a/wqflask/wqflask/templates/correlation_matrix.html b/wqflask/wqflask/templates/correlation_matrix.html
index 593c7bea..d847614a 100644
--- a/wqflask/wqflask/templates/correlation_matrix.html
+++ b/wqflask/wqflask/templates/correlation_matrix.html
@@ -36,7 +36,7 @@
{% if result[0].name == trait.name %}
<td nowrap="ON" align="center" bgcolor="#cccccc"><a href="/show_trait?trait_id={{ trait.name }}&dataset={{ trait.dataset.name }}"><font style="font-size: 11px; color: #000000;" ><em>n</em><br>{{ result[2] }}</font></a></td>
{% else %}
- <td nowrap="ON" align="middle" class="corr_cell"><a href="/corr_scatter_plot?dataset_1={{ trait.dataset.name }}&dataset_2={{ result[0].dataset.name }}&trait_1={{ trait.name }}&trait_2={{ result[0].name }}"><font style="font-size: 11px; color: #000000;" ><span class="corr_value">{{ '%0.3f' % result[1] }}</span><br>{{ result[2] }}</font></a></td>
+ <td nowrap="ON" align="middle" class="corr_cell"><a href="/corr_scatter_plot?dataset_1={{ trait.dataset.name }}&dataset_2={{ result[0].dataset.name }}&trait_1={{ trait.name }}&trait_2={{ result[0].name }}"><font style="font-size: 12px; color: #000000;" ><span class="corr_value">{{ '%0.3f' % result[1] }}</span><br>{{ result[2] }}</font></a></td>
{% endif %}
{% endfor %}
</tr>
@@ -85,6 +85,7 @@
{% block js %}
<script>
+ js_data = {{ js_data | safe }}
loadings = {{ loadings_array | safe }}
</script>
@@ -98,5 +99,6 @@
<script type="text/javascript" src="/static/new/javascript/panelutil.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/js_external/chroma.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/javascript/loadings_plot.js"></script>
+ <script type="text/javascript" src="/static/new/javascript/create_corr_matrix.js"></script>
{% endblock %}
diff --git a/wqflask/wqflask/templates/correlation_page.html b/wqflask/wqflask/templates/correlation_page.html
index c5b4477b..dab196cb 100644
--- a/wqflask/wqflask/templates/correlation_page.html
+++ b/wqflask/wqflask/templates/correlation_page.html
@@ -14,8 +14,8 @@
<h1>Correlation Table</h1>
</div>
- <p>Values of record {{ this_trait.name }} in the <a href="/static/dbdoc/{{dataset.fullname}}">{{ dataset.fullname }}</a>
- dataset were compared to all records in the <a href="/static/dbdoc/{{target_dataset.fullname}}">{{ target_dataset.fullname }}</a>
+ <p>Values of record {{ this_trait.name }} in the <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ dataset.group.accession_id }}">{{ dataset.fullname }}</a>
+ dataset were compared to all records in the <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&GN_AccessionId={{ target_dataset.group.accession_id }}">{{ target_dataset.fullname }}</a>
dataset. The top {{ return_number }} correlations ranked by the {{ formatted_corr_type }} are displayed.
You can resort this list by clicking the headers. Select the Record ID to open the trait data
and analysis page.
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index 0f5e68d7..f522564d 100644
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -1,8 +1,8 @@
{% extends "base.html" %}
{% block title %}Search Results{% endblock %}
{% block css %}
- <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
- <link rel="stylesheet" type="text/css" href="//cdn.datatables.net/scroller/1.4.1/css/scroller.dataTables.min.css">
+ <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/jquery.dataTables.min.css" />
+ <link rel="stylesheet" type="text/css" href="/static/new/packages/Datatables/extensions/scroller.dataTables.min.css">
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.css" >
<link rel="stylesheet" type="text/css" href="//cdn.datatables.net/fixedcolumns/3.0.4/css/dataTables.fixedColumns.css">
{% endblock %}
@@ -11,7 +11,7 @@
{{ header("Search Results",
'GeneNetwork found {}.'.format(numify(results|count, "record", "records"))) }}
- <div class="container">
+ <div class="container" {% if dataset.type == 'Geno' %}style="width: 500px !important;"{% endif %}>
<input type="hidden" name="uc_id" id="uc_id" value="{{ uc_id }}">
<!-- Need to customize text more for other types of searches -->
@@ -44,7 +44,7 @@
{% endfor %}
</p>
- <p>To study a record, click on its ID below. Check records below and click Add button to add to selection.</p>
+ <p>To study a record click on its ID below, and to view the whole description {% if dataset.type == "Publish" %}or list of authors {% endif %} hover over the table cell. Check records below and click Add button to add to selection.</p>
<div>
<br />
@@ -79,7 +79,7 @@
-->
<div id="table_container" style="background-color: #eeeeee; border: 1px solid black;">
- <table class="table table-hover table-striped" id='trait_table' {% if dataset.type == 'Geno' %}width="400px"{% endif %} style="float: left;">
+ <table class="table table-hover table-striped nowrap" id='trait_table' {% if dataset.type == 'Geno' %}width="400px"{% endif %} style="float: left;">
<thead>
<tr>
<th style="background-color: #eeeeee;"></th>
@@ -94,46 +94,6 @@
{% endfor %}
</tr>
</thead>
-
- <tbody>
- {% for this_trait in trait_list %}
- <TR id="trait:{{ this_trait.name }}:{{ this_trait.dataset.name }}">
- <TD><INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" VALUE="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) }}">
- </TD>
- <TD data-export="{{ loop.index }}" align="right">{{ loop.index }}</TD>
- <TD data-export="{{ this_trait.name }}">
- <a href="{{ url_for('show_trait_page',
- trait_id = this_trait.name,
- dataset = dataset.name
- )}}">
- {{ this_trait.name }}
- </a>
- </TD>
- {% if dataset.type == 'ProbeSet' %}
- <TD data-export="{{ this_trait.symbol }}">{{ this_trait.symbol }}</TD>
- <TD data-export="{{ this_trait.description_display }}">{{ this_trait.description_display }}</TD>
- <TD data-export="{{ this_trait.location_repr }}">{{ this_trait.location_repr }}</TD>
- <TD data-export="{{ '%0.3f' % this_trait.mean|float }}" align="right">{{ '%0.3f' % this_trait.mean|float }}</TD>
- <TD data-export="{{ '%0.3f' % this_trait.LRS_score_repr|float }}" align="right">{{ '%0.3f' % this_trait.LRS_score_repr|float }}</TD>
- <TD data-export="{{ this_trait.LRS_location_repr }}">{{ this_trait.LRS_location_repr }}</TD>
- <TD data-export="{{ '%0.3f' % this_trait.additive|float }}" align="right">{{ '%0.3f' % this_trait.additive|float }}</TD>
- {% elif dataset.type == 'Publish' %}
- <TD data-export="{{ this_trait.description_display }}">{{ this_trait.description_display }}</TD>
- <TD data-export="{{ this_trait.authors }}">{{ this_trait.authors }}</TD>
- <TD data-export="{{ this_trait.pubmed_text }}" data-sort="{{ this_trait.pubmed_text }}">
- <a href="{{ this_trait.pubmed_link }}">
- {{ this_trait.pubmed_text }}
- </a>
- </TD>
- <TD data-export="{{ '%0.3f' % this_trait.LRS_score_repr|float }}">{{ '%0.3f' % this_trait.LRS_score_repr|float }}</TD>
- <TD data-export="{{ this_trait.LRS_location_repr }}">{{ this_trait.LRS_location_repr }}</TD>
- <TD data-export="{{ '%0.3f' % this_trait.additive|float }}">{{ '%0.3f' % this_trait.additive|float }}</TD>
- {% elif dataset.type == 'Geno' %}
- <TD data-export="{{ this_trait.location_repr }}">{{ this_trait.location_repr }}</TD>
- {% endif %}
- </TR>
- {% endfor %}
- </tbody>
{% if trait_list|length > 20 %}
<tfoot>
<tr>
@@ -171,6 +131,10 @@
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.min.js"></script>
+ <script type='text/javascript'>
+ var json_trait_list = {{ json_trait_list|safe }};
+ </script>
+
<script type="text/javascript" charset="utf-8">
$(document).ready( function () {
@@ -184,12 +148,34 @@
{% if dataset.type == 'ProbeSet' %}
//ZS: Need to make sort by symbol, also need to make sure blank symbol fields at the bottom and symbols starting with numbers below letters
$('#trait_table').DataTable( {
+ "createdRow": function ( row, data, index ) {
+ $('td', row).eq(1).attr('align', 'right');
+ $('td', row).eq(1).attr('data-export', index+1);
+ $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text());
+ $('td', row).eq(3).attr('title', $('td', row).eq(3).text());
+ $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text());
+ $('td', row).eq(4).attr('title', $('td', row).eq(4).text());
+ $('td', row).eq(4).attr('data-export', $('td', row).eq(4).text());
+ if ($('td', row).eq(4).text().length > 50) {
+ $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 50));
+ $('td', row).eq(4).text($('td', row).eq(4).text() + '...')
+ }
+ $('td', row).eq(5).attr('data-export', $('td', row).eq(5).text());
+ $('td', row).eq(6).attr('align', 'right');
+ $('td', row).eq(6).attr('data-export', $('td', row).eq(6).text());
+ $('td', row).eq(7).attr('align', 'right');
+ $('td', row).eq(7).attr('data-export', $('td', row).eq(7).text());
+ $('td', row).eq(8).attr('data-export', $('td', row).eq(8).text());
+ $('td', row).eq(9).attr('align', 'right');
+ $('td', row).eq(9).attr('data-export', $('td', row).eq(9).text());
+ },
+ "data": json_trait_list,
"columns": [
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
- { "type": "natural", "width": "40%" },
+ { "type": "natural", "width": "30%" },
{ "type": "natural", "width": "15%" },
{ "type": "natural" },
{ "type": "natural" },
@@ -199,15 +185,38 @@
"order": [[1, "asc" ]],
"sDom": "RZtir",
"iDisplayLength": -1,
- "bDeferRender": true,
+ "deferRender": true,
"bSortClasses": false,
- "scrollY": true,
+ "scrollY": "700px",
"scrollCollapse": false,
+ "scroller": true,
"paging": false
} );
{% elif dataset.type == 'Publish' %}
$('#trait_table').DataTable( {
+ "createdRow": function ( row, data, index ) {
+ $('td', row).eq(1).attr('align', 'right');
+ $('td', row).eq(1).attr('data-export', index+1);
+ $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text());
+ $('td', row).eq(3).attr('title', $('td', row).eq(3).text());
+ $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text());
+ if ($('td', row).eq(3).text().length > 40) {
+ $('td', row).eq(3).text($('td', row).eq(3).text().substring(0, 40));
+ $('td', row).eq(3).text($('td', row).eq(3).text() + '...')
+ }
+ $('td', row).eq(4).attr('title', $('td', row).eq(4).text());
+ $('td', row).eq(4).attr('data-export', $('td', row).eq(4).text());
+ $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 30));
+ $('td', row).eq(5).attr('align', 'right');
+ $('td', row).eq(5).attr('data-export', $('td', row).eq(5).text());
+ $('td', row).eq(6).attr('align', 'right');
+ $('td', row).eq(6).attr('data-export', $('td', row).eq(6).text());
+ $('td', row).eq(7).attr('data-export', $('td', row).eq(7).text());
+ $('td', row).eq(8).attr('align', 'right');
+ $('td', row).eq(8).attr('data-export', $('td', row).eq(8).text());
+ },
+ "data": json_trait_list,
"columns": [
{ "type": "natural" },
{ "type": "natural" },
@@ -216,21 +225,29 @@
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
- { "type": "natural", "width": "15%"},
+ { "type": "natural" },
{ "type": "natural" }
],
"order": [[1, "asc" ]],
"sDom": "RZtir",
"iDisplayLength": -1,
"autoWidth": false,
- "bDeferRender": true,
+ "deferRender": true,
"bSortClasses": false,
"scrollY": "700px",
- "scrollCollapse": false,
+ "scrollCollapse": true,
+ "scroller": true,
"paging": false
} );
{% elif dataset.type == 'Geno' %}
$('#trait_table').DataTable( {
+ "createdRow": function ( row, data, index ) {
+ $('td', row).eq(1).attr('align', 'right');
+ $('td', row).eq(1).attr('data-export', index+1);
+ $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text());
+ $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text());
+ },
+ "data": json_trait_list,
"columns": [
{ "type": "natural" },
{ "type": "natural" },
@@ -240,11 +257,12 @@
"order": [[1, "asc" ]],
"sDom": "RZtir",
"iDisplayLength": -1,
- "autoWidth": true,
- "bDeferRender": true,
+ "autoWidth": false,
+ "deferRender": true,
"bSortClasses": false,
"scrollY": "700px",
- "scrollCollapse": false,
+ "scrollCollapse": true,
+ "scroller": true,
"paging": false
} );
{% endif %}
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-22 23:43:09 +0000