diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/utility/tools.py | 37 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 6 |
2 files changed, 32 insertions, 11 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index d46a84ba..49e3471e 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -13,6 +13,11 @@ logger = logging.getLogger(__name__ ) OVERRIDES = {} +def app_set(command_id, value): + """Set application wide value""" + app.config.setdefault(command_id,value) + value + def get_setting(command_id,guess=None): """Resolve a setting from the environment or the global settings in app.config, with valid_path is a function checking whether the @@ -40,6 +45,7 @@ def get_setting(command_id,guess=None): def value(command): if command: # sys.stderr.write("Found "+command+"\n") + app_set(command_id,command) return command else: return None @@ -89,6 +95,18 @@ def valid_path(dir): return dir return None +def js_path(module=None): + """ + Find the JS module in the two paths + """ + try_gn = get_setting("JS_GN_PATH")+"/"+module + if valid_path(try_gn): + return try_gn + try_guix = get_setting("JS_GUIX_PATH")+"/"+module + if valid_path(try_guix): + return try_guix + raise "No JS path found for "+module+" (check JS_GN_PATH)" + def pylmm_command(guess=None): return valid_bin(get_setting("PYLMM_COMMAND",guess)) @@ -212,16 +230,19 @@ USE_REDIS = get_setting_bool('USE_REDIS') USE_GN_SERVER = get_setting_bool('USE_GN_SERVER') GENENETWORK_FILES = get_setting('GENENETWORK_FILES') -GUIX_JS_PATH = get_setting('GUIX_JS_PATH') -assert_dir(GUIX_JS_PATH) - -PYLMM_COMMAND = pylmm_command() -GEMMA_COMMAND = gemma_command() -PLINK_COMMAND = plink_command() +JS_GUIX_PATH = get_setting('JS_GUIX_PATH') +# assert_dir(JS_GUIX_PATH) - don't enforce right now +JS_GN_PATH = get_setting('JS_GN_PATH') +assert_dir(JS_GN_PATH) + +PYLMM_COMMAND = app_set("PYLMM_COMMAND",pylmm_command()) +GEMMA_COMMAND = app_set("GEMMA_COMMAND",gemma_command()) +PLINK_COMMAND = app_set("PLINK_COMMAND",plink_command()) TEMPDIR = tempdir() # defaults to UNIX TMPDIR -TWITTER_POST_FETCHER_JS_PATH = GUIX_JS_PATH + "/Twitter-Post-Fetcher" -assert_dir(TWITTER_POST_FETCHER_JS_PATH) +# ---- Handle specific JS modules +JS_TWITTER_POST_FETCHER_PATH = get_setting("JS_TWITTER_POST_FETCHER_PATH",js_path("Twitter-Post-Fetcher")) +assert_dir(JS_TWITTER_POST_FETCHER_PATH) from six import string_types diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 3882e60a..07151425 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -53,7 +53,7 @@ from wqflask.ctl import ctl_analysis #from wqflask.trait_submission import submit_trait from utility import temp_data -from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,TWITTER_POST_FETCHER_JS_PATH +from utility.tools import SQL_URI,TEMPDIR,USE_REDIS,USE_GN_SERVER,GN_SERVER_URL,GN_VERSION,JS_TWITTER_POST_FETCHER_PATH from utility.helper_functions import get_species_groups from base import webqtlFormData @@ -147,8 +147,8 @@ def tmp_page(img_path): img_base64 = bytesarray ) @app.route("/twitter/<path:filename>") -def bd_files(filename): - return send_from_directory(TWITTER_POST_FETCHER_JS_PATH, filename) +def twitter(filename): + return send_from_directory(JS_TWITTER_POST_FETCHER_PATH, filename) #@app.route("/data_sharing") #def data_sharing_page(): |