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-rw-r--r--wqflask/wqflask/static/new/javascript/show_trait.js156
1 files changed, 75 insertions, 81 deletions
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js
index cde92160..8b9a57a3 100644
--- a/wqflask/wqflask/static/new/javascript/show_trait.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait.js
@@ -654,6 +654,7 @@ hide_no_value = function() {
})(this));
};
$('#hide_no_value').click(hide_no_value);
+
block_outliers = function() {
return $('.outlier').each((function(_this) {
return function(_index, element) {
@@ -662,6 +663,7 @@ block_outliers = function() {
})(this));
};
$('#block_outliers').click(block_outliers);
+
reset_samples_table = function() {
$('input[name="transform"]').val("");
$('span[name="transform_text"]').text("")
@@ -677,96 +679,56 @@ $('.reset').click(function() {
edit_data_change();
});
-log2_normalize_data = function(zero_to_one_vals_exist) {
- return $('.trait_value_input').each((function(_this) {
- return function(_index, element) {
- current_value = $(element).data("value")
- if(isNaN(current_value)) {
- return current_value
- } else {
- if (zero_to_one_vals_exist){
- current_value = parseFloat(current_value) + 1;
- }
- $(element).val(Math.log2(current_value).toFixed(3));
- return Math.log2(current_value).toFixed(3)
- }
- };
- })(this));
+log2_data = function(this_node) {
+ current_value = this_node.value;
+ if(!isNaN(current_value)) {
+ if (zero_to_one_vals_exist){
+ current_value = parseFloat(current_value) + 1;
+ }
+ this_node.value = Math.log2(current_value).toFixed(3);
+ }
};
-log10_normalize_data = function(zero_to_one_vals_exist) {
- return $('.trait_value_input').each((function(_this) {
- return function(_index, element) {
- current_value = $(element).data("value")
- if(isNaN(current_value)) {
- return current_value
- } else {
- if (zero_to_one_vals_exist){
- current_value = parseFloat(current_value) + 1;
- }
- $(element).val(Math.log10(current_value).toFixed(3));
- return Math.log10(current_value).toFixed(3)
- }
- };
- })(this));
+log10_data = function() {
+ current_value = this_node.value;
+ if(!isNaN(current_value)) {
+ if (zero_to_one_vals_exist){
+ current_value = parseFloat(current_value) + 1;
+ }
+ this_node.value = Math.log10(current_value).toFixed(3);
+ }
};
-sqrt_normalize_data = function() {
- return $('.edit_sample_value').each((function(_this) {
- return function(_index, element) {
- current_value = parseFloat($(element).data("value")) + 1;
- if(isNaN(current_value)) {
- return current_value
- } else {
- $(element).val(Math.sqrt(current_value).toFixed(3));
- return Math.sqrt(current_value).toFixed(3)
- }
- };
- })(this));
+sqrt_data = function() {
+ current_value = this_node.value;
+ if(!isNaN(current_value)) {
+ this_node.value = Math.sqrt(current_value).toFixed(3);
+ }
};
invert_data = function() {
- return $('.edit_sample_value').each((function(_this) {
- return function(_index, element) {
- current_value = parseFloat($(element).val());
- if(isNaN(current_value)) {
- return current_value
- } else {
- $(element).val(-(current_value));
- return -(current_value)
- }
- };
- })(this));
+ current_value = this_node.value;
+ if(!isNaN(current_value)) {
+ this_node.value = -(current_value);
+ }
};
qnorm_data = function() {
- return $('.edit_sample_value').each((function(_this) {
- return function(_index, element) {
- current_value = parseFloat($(element).data("value")) + 1;
- if(isNaN(current_value)) {
- return current_value
- } else {
- $(element).val($(element).data("qnorm"));
- return $(element).data("qnorm");
- }
- };
- })(this));
+ current_value = this_node.value;
+ qnorm_value = this_node.attributes['data-qnorm'].value;
+ if(!isNaN(current_value)) {
+ this_node.value = qnorm_value;
+ }
};
zscore_data = function() {
- return $('.edit_sample_value').each((function(_this) {
- return function(_index, element) {
- current_value = parseFloat($(element).data("value")) + 1;
- if(isNaN(current_value)) {
- return current_value
- } else {
- $(element).val($(element).data("zscore"));
- return $(element).data("zscore");
- }
- };
- })(this));
+ current_value = this_node.value;
+ qnorm_value = this_node.attributes['data-zscore'].value;
+ if(!isNaN(current_value)) {
+ this_node.value = qnorm_value;
+ }
};
check_for_zero_to_one_vals = function() {
@@ -786,15 +748,47 @@ check_for_zero_to_one_vals = function() {
return zero_to_one_vals_exist
}
+do_transform = function(transform_type) {
+ tables = ['samples_primary', 'samples_other'];
+ for (_i = 0, _len = tables.length; _i < _len; _i++) {
+ table = tables[_i];
+ if ($('#' + table).length) {
+ table_api = $('#' + table).DataTable();
+ val_nodes = table_api.column(3).nodes().to$();
+ for (i = 0; i < val_nodes.length; i++) {
+ this_node = val_nodes[i].childNodes[0]
+ if (transform_type == "log2"){
+ log2_data(this_node)
+ }
+ if (transform_type == "log10"){
+ log10_data(this_node)
+ }
+ if (transform_type == "sqrt"){
+ sqrt_data(this_node)
+ }
+ if (transform_type == "invert"){
+ invert_data(this_node)
+ }
+ if (transform_type == "qnorm"){
+ qnorm_data(this_node)
+ }
+ if (transform_type == "zscore"){
+ zscore_data(this_node)
+ }
+ }
+ }
+ }
+}
+
normalize_data = function() {
if ($('#norm_method option:selected').val() == 'log2' || $('#norm_method option:selected').val() == 'log10'){
if ($('input[name="transform"]').val() != "log2" && $('#norm_method option:selected').val() == 'log2') {
- log2_normalize_data(zero_to_one_vals_exist)
+ do_transform("log2")
$('input[name="transform"]').val("log2")
$('span[name="transform_text"]').text(" - log2 transformed")
} else {
if ($('input[name="transform"]').val() != "log10" && $('#norm_method option:selected').val() == 'log10'){
- log10_normalize_data(zero_to_one_vals_exist)
+ do_transform("log10")
$('input[name="transform"]').val("log10")
$('span[name="transform_text"]').text(" - log10 transformed")
}
@@ -802,26 +796,26 @@ normalize_data = function() {
}
else if ($('#norm_method option:selected').val() == 'sqrt'){
if ($('input[name="transform"]').val() != "sqrt") {
- sqrt_normalize_data()
+ do_transform("sqrt")
$('input[name="transform"]').val("sqrt")
$('span[name="transform_text"]').text(" - Square Root transformed")
}
}
else if ($('#norm_method option:selected').val() == 'invert'){
- invert_data()
+ do_transform("invert")
$('input[name="transform"]').val("inverted")
$('span[name="transform_text"]').text(" - Inverted")
}
else if ($('#norm_method option:selected').val() == 'qnorm'){
if ($('input[name="transform"]').val() != "qnorm") {
- qnorm_data()
+ do_transform("qnorm")
$('input[name="transform"]').val("qnorm")
$('span[name="transform_text"]').text(" - Quantile Normalized")
}
}
else if ($('#norm_method option:selected').val() == 'zscore'){
if ($('input[name="transform"]').val() != "zscore") {
- zscore_data()
+ do_transform("zscore")
$('input[name="transform"]').val("zscore")
$('span[name="transform_text"]').text(" - Z-Scores")
}