diff options
Diffstat (limited to 'wqflask')
| -rwxr-xr-x | wqflask/wqflask/show_trait/DataEditingPage.py | 140 |
1 files changed, 76 insertions, 64 deletions
diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py index d07cec59..f9133f27 100755 --- a/wqflask/wqflask/show_trait/DataEditingPage.py +++ b/wqflask/wqflask/show_trait/DataEditingPage.py @@ -1584,13 +1584,6 @@ class DataEditingPage(templatePage): ########################################## def dispTraitValues(self, fd, varianceDataPage, nCols, thisTrait): print("in dispTraitValues") - #traitTableOptions = HT.Div(style="border: 3px solid #EEEEEE; -moz-border-radius: 10px; -webkit-border-radius: 10px; width: 625px; padding: 5px 5px 10px 8px; font-size: 12px; background: #DDDDDD;") - #resetButton = HT.Input(type='button',name='resetButton',value=' Reset ',Class="button") - #blockSamplesField = HT.Input(type="text",style="background-color:white;border: 1px solid black;font-size: 14px;", name="removeField") - #blockSamplesButton = HT.Input(type='button',value=' Block ', name='blockSamples', Class="button") - #showHideNoValue = HT.Input(type='button', name='showHideNoValue', value=' Hide No Value ',Class='button') - #blockMenuSpan = HT.Span(Id="blockMenuSpan") - #blockMenu = HT.Select(name='block_method') if fd.genotype.type == "riset": allstrainlist_neworder = fd.f1list + fd.strainlist @@ -1599,55 +1592,57 @@ class DataEditingPage(templatePage): attribute_ids = [] attribute_names = [] - try: - #ZS: Id values for this trait's extra attributes; used to create "Exclude" dropdown and query for attribute values and create - self.cursor.execute("""SELECT CaseAttribute.Id, CaseAttribute.Name + #try: + #ZS: Id values for this trait's extra attributes; used to create "Exclude" dropdown and query for attribute values and create + self.cursor.execute("""SELECT CaseAttribute.Id, CaseAttribute.Name + FROM CaseAttribute, CaseAttributeXRef + WHERE CaseAttributeXRef.ProbeSetFreezeId = %s AND + CaseAttribute.Id = CaseAttributeXRef.CaseAttributeId + group by CaseAttributeXRef.CaseAttributeId""", + (str(thisTrait.db.id),)) + + #exclude_menu = HT.Select(name="exclude_menu") + #dropdown_menus = [] #ZS: list of dropdown menus with the distinct values of each attribute (contained in DIVs so the style parameter can be edited and they can be hidden) + + #for attribute in self.cursor.fetchall(): + # #attribute_ids.append(attribute[0]) + # #attribute_names.append(attribute[1]) + # pass + for this_attr_name in attribute_names: + #exclude_menu.append((this_attr_name.capitalize(), this_attr_name)) + # Todo: Needs testing still! + self.cursor.execute("""SELECT DISTINCT CaseAttributeXRef.Value FROM CaseAttribute, CaseAttributeXRef - WHERE CaseAttributeXRef.ProbeSetFreezeId = '%s' AND - CaseAttribute.Id = CaseAttributeXRef.CaseAttributeId - group by CaseAttributeXRef.CaseAttributeId""" % (str(thisTrait.db.id))) - - exclude_menu = HT.Select(name="exclude_menu") - dropdown_menus = [] #ZS: list of dropdown menus with the distinct values of each attribute (contained in DIVs so the style parameter can be edited and they can be hidden) - - for attribute in self.cursor.fetchall(): - #attribute_ids.append(attribute[0]) - #attribute_names.append(attribute[1]) - pass - for this_attr_name in attribute_names: - #exclude_menu.append((this_attr_name.capitalize(), this_attr_name)) - self.cursor.execute("""SELECT DISTINCT CaseAttributeXRef.Value - FROM CaseAttribute, CaseAttributeXRef - WHERE CaseAttribute.Name = '%s' AND - CaseAttributeXRef.CaseAttributeId = CaseAttribute.Id""" % (this_attr_name)) - try: - distinct_values = self.cursor.fetchall() - attr_value_menu_div = HT.Div(style="display:none;", Class="attribute_values") #container used to show/hide dropdown menus - attr_value_menu = HT.Select(name=this_attr_name) - #attr_value_menu.append(("None", "show_all")) - for value in distinct_values: - #attr_value_menu.append((str(value[0]), value[0])) - pass - #attr_value_menu_div.append(attr_value_menu) - #dropdown_menus.append(attr_value_menu_div) - except: - pass - except: - pass - - other_strains = [] - for strain in thisTrait.data.keys(): - if strain not in allstrainlist_neworder: - pass - #other_strains.append(strain) + WHERE CaseAttribute.Name = %s AND + CaseAttributeXRef.CaseAttributeId = CaseAttribute.Id""", + (this_attr_name,)) + #try: + distinct_values = self.cursor.fetchall() + #attr_value_menu_div = HT.Div(style="display:none;", Class="attribute_values") #container used to show/hide dropdown menus + #attr_value_menu = HT.Select(name=this_attr_name) + #attr_value_menu.append(("None", "show_all")) + #for value in distinct_values: + # #attr_value_menu.append((str(value[0]), value[0])) + # pass + #attr_value_menu_div.append(attr_value_menu) + #dropdown_menus.append(attr_value_menu_div) + #except: + # pass + #except: + # pass - if other_strains: - #blockMenu.append(('%s Only' % fd.RISet,'1')) - #blockMenu.append(('Non-%s Only' % fd.RISet,'0')) - #blockMenuSpan.append(blockMenu) - pass - else: - pass + #for strain in thisTrait.data.keys(): + # if strain not in allstrainlist_neworder: + # pass + # #other_strains.append(strain) + # + #if other_strains: + # #blockMenu.append(('%s Only' % fd.RISet,'1')) + # #blockMenu.append(('Non-%s Only' % fd.RISet,'0')) + # #blockMenuSpan.append(blockMenu) + # pass + #else: + # pass #showHideOutliers = HT.Input(type='button', name='showHideOutliers', value=' Hide Outliers ', Class='button') #showHideMenuOptions = HT.Span(Id="showHideOptions", style="line-height:225%;") @@ -1659,8 +1654,8 @@ class DataEditingPage(templatePage): #showHideMenuOptions.append(HT.Bold(" Block samples by index: "), blockSamplesField, " ", blockSamplesButton, HT.BR()) #exportButton = HT.Input(type='button', name='export', value=' Export ', Class='button') - if len(attribute_names) > 0: - excludeButton = HT.Input(type='button', name='excludeGroup', value=' Block ', Class='button') + #if len(attribute_names) > 0: + # excludeButton = HT.Input(type='button', name='excludeGroup', value=' Block ', Class='button') #showHideMenuOptions.append(HT.Bold(" Block samples by group:"), " "*5, exclude_menu, " "*5) #for menu in dropdown_menus: # pass @@ -1684,15 +1679,30 @@ class DataEditingPage(templatePage): #primary_table = HT.TableLite(cellspacing=0, cellpadding=0, Id="sortable1", Class="tablesorter") #primary_header = self.getTableHeader(fd=fd, thisTrait=thisTrait, nCols=nCols, attribute_names=attribute_names) #Generate header for primary table object - other_strainsExist = False - for strain in thisTrait.data.keys(): - print("hjl - strain is:", strain) - if strain not in allstrainlist_neworder: - other_strainsExist = True - break + #other_strainsExist = False + this_trait_strains = set(thisTrait.data.keys()) + #ZS - Checks if there are any strains in this_trait_strains that aren't in allstrainlist_neworder + other_strainsExist = this_trait_strains - set(allstrainlist_neworder) + + #for strain in thisTrait.data.keys(): + # print("hjl - strain is:", strain) + # if strain not in allstrainlist_neworder: + # other_strainsExist = True + # break mainForm = None # Just trying to get things working - primary_strains = self.addTrait2Table(fd=fd, varianceDataPage=varianceDataPage, strainlist=allstrainlist_neworder, mainForm=mainForm, thisTrait=thisTrait, other_strainsExist=other_strainsExist, attribute_ids=attribute_ids, attribute_names=attribute_names, strains='primary') + + primary_strainlist = fd.parlist + allstrainlist_neworder + + primary_strains = self.addTrait2Table(fd=fd, + varianceDataPage=varianceDataPage, + strainlist=primary_strainlist, + mainForm=mainForm, + thisTrait=thisTrait, + other_strainsExist=other_strainsExist, + attribute_ids=attribute_ids, + attribute_names=attribute_names, + strains='primary') other_strains = [] for strain in thisTrait.data.keys(): @@ -1727,7 +1737,9 @@ class DataEditingPage(templatePage): self.other_strains = other_strains - def addTrait2Table(self, fd, varianceDataPage, strainlist, mainForm, thisTrait, other_strainsExist=None, attribute_ids=[], attribute_names=[], strains='primary'): + def addTrait2Table(self, fd, varianceDataPage, strainlist, mainForm, thisTrait, + other_strainsExist=None, attribute_ids=[], + attribute_names=[], strains='primary'): #XZ, Aug 23, 2010: I commented the code related to the display of animal case #strainInfo = thisTrait.has_key('strainInfo') and thisTrait.strainInfo print("in addTrait2Table") |