diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/marker_regression/display_mapping_results.py | 40 | ||||
| -rw-r--r-- | wqflask/wqflask/static/fonts/verdanab.ttf | bin | 0 -> 156340 bytes |
2 files changed, 23 insertions, 17 deletions
diff --git a/wqflask/wqflask/marker_regression/display_mapping_results.py b/wqflask/wqflask/marker_regression/display_mapping_results.py index 6f50601d..bda899fb 100644 --- a/wqflask/wqflask/marker_regression/display_mapping_results.py +++ b/wqflask/wqflask/marker_regression/display_mapping_results.py @@ -73,6 +73,7 @@ MEDIUMPURPLE = ImageColor.getrgb("mediumpurple") # ---- FONT FILES ---- # VERDANA_FILE = "./wqflask/static/fonts/verdana.ttf" +VERDANA_BOLD_FILE = "./wqflask/static/fonts/verdanab.ttf" TREBUC_FILE = "./wqflask/static/fonts/trebucbd.ttf" FNT_BS_FILE = "./wqflask/static/fonts/fnt_bs.ttf" ARIAL_FILE = "./wqflask/static/fonts/arial.ttf" @@ -1719,18 +1720,16 @@ class DisplayMappingResults(object): font=clickableRegionLabelFont, fill=self.CLICKABLE_ENSEMBL_TEXT_COLOR) #draw the gray text - chrFont = ImageFont.truetype(font=VERDANA_FILE, size=26*zoom) - traitFont = ImageFont.truetype(font=VERDANA_FILE, size=14) + chrFont = ImageFont.truetype(font=VERDANA_BOLD_FILE, size=26*zoom) chrX = xLeftOffset + plotWidth - 2 - im_drawer.textsize( "Chr %s" % self.ChrList[self.selectedChr][0], font=chrFont)[0] im_drawer.text( text="Chr %s" % self.ChrList[self.selectedChr][0], - xy=(chrX, ensemblPaddingTop-5), font=chrFont, fill=GRAY) + xy=(chrX, phenogenPaddingTop), font=chrFont, fill=GRAY) # end of drawBrowserClickableRegions else: #draw the gray text chrFont = ImageFont.truetype(font=VERDANA_FILE, size=26*zoom) - traitFont = ImageFont.truetype(font=VERDANA_FILE, size=14) chrX = xLeftOffset + (plotWidth - im_drawer.textsize( "Chr %s" % currentChromosome, font=chrFont)[0])/2 im_drawer.text( @@ -1751,7 +1750,7 @@ class DisplayMappingResults(object): #Parameters NUM_MINOR_TICKS = 5 # Number of minor ticks between major ticks - X_MAJOR_TICK_THICKNESS = 2 + X_MAJOR_TICK_THICKNESS = 3 X_MINOR_TICK_THICKNESS = 1 X_AXIS_THICKNESS = 1*zoom @@ -1762,10 +1761,10 @@ class DisplayMappingResults(object): xAxisTickMarkColor = BLACK xAxisLabelColor = BLACK fontHeight = 12*fontZoom # How tall the font that we're using is - spacingFromLabelToAxis = 5 + spacingFromLabelToAxis = 10 if self.plotScale == 'physic': - strYLoc = yZero + spacingFromLabelToAxis + MBLabelFont.font.height + strYLoc = yZero + MBLabelFont.font.height/2 ###Physical single chromosome view if self.selectedChr > -1: XScale = Plot.detScale(startMb, endMb) @@ -1826,18 +1825,17 @@ class DisplayMappingResults(object): yZero+10*zoom), fill=BLACK, angle=270) startPosX += (self.ChrLengthDistList[i]+self.GraphInterval)*plotXScale - TEXT_Y_DISPLACEMENT = -15 megabaseLabelFont = ImageFont.truetype(font=VERDANA_FILE, size=int(18*zoom*1.5)) im_drawer.text( text="Megabases", xy=( xLeftOffset+(plotWidth-im_drawer.textsize( "Megabases",font=megabaseLabelFont)[0])/2, - strYLoc+MBLabelFont.font.height+10*(zoom%2)+TEXT_Y_DISPLACEMENT), + strYLoc+MBLabelFont.font.height+10*(zoom%2)), font=megabaseLabelFont, fill=BLACK) pass else: - strYLoc = yZero + spacingFromLabelToAxis + MBLabelFont.font.height + 8 + strYLoc = yZero + spacingFromLabelToAxis + MBLabelFont.font.height/2 ChrAInfo = [] preLpos = -1 distinctCount = 0.0 @@ -1933,12 +1931,12 @@ class DisplayMappingResults(object): fill=lineColor) startPosX += (self.ChrLengthDistList[j]+self.GraphInterval)*plotXScale - centimorganLabelFont = ImageFont.truetype(font=VERDANA_FILE, size=18*zoom*1.5) + centimorganLabelFont = ImageFont.truetype(font=VERDANA_FILE, size=int(18*zoom*1.5)) im_drawer.text( text="Centimorgans", xy=(xLeftOffset+(plotWidth-im_drawer.textsize( - "Megabases", font=centimorganLabelFont)[0])/2, - strYLoc + MBLabelFont.font.height+ 10*(zoom%2) + 10), + "Centimorgans", font=centimorganLabelFont)[0])/2, + strYLoc + MBLabelFont.font.height+ 10*(zoom%2)), font=centimorganLabelFont, fill=BLACK) im_drawer.line(xy=((xLeftOffset,yZero), (xLeftOffset+plotWidth,yZero)), @@ -2055,8 +2053,16 @@ class DisplayMappingResults(object): LRSLODFont=ImageFont.truetype(font=VERDANA_FILE, size=int(18*zoom*1.5)) yZero = yTopOffset + plotHeight - TEXT_X_DISPLACEMENT = -20 - TEXT_Y_DISPLACEMENT = -215 + # TEXT_X_DISPLACEMENT = -20 + #TEXT_Y_DISPLACEMENT = -215 + if all_int: + TEXT_X_DISPLACEMENT = -12 + else: + TEXT_X_DISPLACEMENT = -30 + if self.LRS_LOD == "-log(p)": + TEXT_Y_DISPLACEMENT = -242 + else: + TEXT_Y_DISPLACEMENT = -210 draw_rotated_text( canvas, text=self.LRS_LOD, font=LRSLODFont, xy=(xLeftOffset - im_drawer.textsize( @@ -2140,7 +2146,7 @@ class DisplayMappingResults(object): else: if self.additiveChecked: additiveMax = max(map(lambda X : abs(X['additive']), self.qtlresults)) - lrsEdgeWidth = 2 + lrsEdgeWidth = 3 if zoom == 2: lrsEdgeWidth = 2 * lrsEdgeWidth @@ -2307,7 +2313,7 @@ class DisplayMappingResults(object): text="5", xy=( Xc-im_drawer.textsize("5",font=symbolFont)[0]/2+1, - Yc+2), + Yc-4), fill=point_color, font=symbolFont) else: LRSCoordXY.append((Xc, Yc)) diff --git a/wqflask/wqflask/static/fonts/verdanab.ttf b/wqflask/wqflask/static/fonts/verdanab.ttf Binary files differnew file mode 100644 index 00000000..1a99258f --- /dev/null +++ b/wqflask/wqflask/static/fonts/verdanab.ttf |