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-rwxr-xr-xwqflask/wqflask/gsearch.py36
-rwxr-xr-xwqflask/wqflask/static/new/javascript/search_results.js1
-rw-r--r--wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize2.js943
-rwxr-xr-xwqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js2
-rwxr-xr-xwqflask/wqflask/templates/base.html4
-rwxr-xr-xwqflask/wqflask/templates/gsearch_gene.html66
-rwxr-xr-xwqflask/wqflask/templates/gsearch_pheno.html66
-rwxr-xr-xwqflask/wqflask/templates/search_result_page.html9
8 files changed, 1056 insertions, 71 deletions
diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py
index dd0815b1..3d693a4c 100755
--- a/wqflask/wqflask/gsearch.py
+++ b/wqflask/wqflask/gsearch.py
@@ -1,6 +1,9 @@
from __future__ import absolute_import, print_function, division
from flask import Flask, g
+from base.data_set import create_dataset
+from base.trait import GeneralTrait
+from dbFunction import webqtlDatabaseFunction
class GSearch(object):
@@ -13,7 +16,7 @@ class GSearch(object):
Species.`Name` AS species_name,
InbredSet.`Name` AS inbredset_name,
Tissue.`Name` AS tissue_name,
- ProbeSetFreeze.FullName AS probesetfreeze_fullname,
+ ProbeSetFreeze.Name AS probesetfreeze_name,
ProbeSet.Name AS probeset_name,
ProbeSet.Symbol AS probeset_symbol,
ProbeSet.`description` AS probeset_description,
@@ -32,15 +35,26 @@ class GSearch(object):
AND ( MATCH (ProbeSet.Name,ProbeSet.description,ProbeSet.symbol,alias,GenbankId, UniGeneId, Probe_Target_Description) AGAINST ('%s' IN BOOLEAN MODE) )
AND ProbeSet.Id = ProbeSetXRef.ProbeSetId
AND ProbeSetXRef.ProbeSetFreezeId=ProbeSetFreeze.Id
- ORDER BY species_name, inbredset_name, tissue_name, probesetfreeze_fullname, probeset_name
+ AND ProbeSetFreeze.public > 0
+ ORDER BY species_name, inbredset_name, tissue_name, probesetfreeze_name, probeset_name
LIMIT 1000
""" % (self.terms)
- self.results = g.db.execute(sql).fetchall()
+ re = g.db.execute(sql).fetchall()
+ self.trait_list = []
+ for line in re:
+ dataset = create_dataset(line[3], "ProbeSet")
+ trait_id = line[4]
+ this_trait = GeneralTrait(dataset=dataset, name=trait_id, get_qtl_info=True)
+ self.trait_list.append(this_trait)
+ species = webqtlDatabaseFunction.retrieve_species(dataset.group.name)
+ dataset.get_trait_info([this_trait], species)
+
elif self.type == "phenotype":
sql = """
SELECT
Species.`Name`,
InbredSet.`Name`,
+ PublishFreeze.`Name`,
PublishXRef.`Id`,
Phenotype.`Post_publication_description`,
Publication.`Authors`,
@@ -48,8 +62,9 @@ class GSearch(object):
PublishXRef.`LRS`,
PublishXRef.`Locus`,
PublishXRef.`additive`
- FROM Species,InbredSet,PublishXRef,Phenotype,Publication
+ FROM Species,InbredSet,PublishFreeze,PublishXRef,Phenotype,Publication
WHERE PublishXRef.`InbredSetId`=InbredSet.`Id`
+ AND PublishFreeze.`InbredSetId`=InbredSet.`Id`
AND InbredSet.`SpeciesId`=Species.`Id`
AND PublishXRef.`PhenotypeId`=Phenotype.`Id`
AND PublishXRef.`PublicationId`=Publication.`Id`
@@ -63,6 +78,15 @@ class GSearch(object):
OR Publication.Title REGEXP "[[:<:]]%s[[:>:]]"
OR Publication.Authors REGEXP "[[:<:]]%s[[:>:]]"
OR PublishXRef.Id REGEXP "[[:<:]]%s[[:>:]]")
- ORDER BY Species.`Name`, InbredSet.`Name`, Phenotype.`Post_publication_description`
+ ORDER BY Species.`Name`, InbredSet.`Name`, PublishXRef.`Id`
+ LIMIT 1000
""" % (self.terms, self.terms, self.terms, self.terms, self.terms, self.terms, self.terms, self.terms, self.terms, self.terms)
- self.results = g.db.execute(sql).fetchall()
+ re = g.db.execute(sql).fetchall()
+ self.trait_list = []
+ for line in re:
+ dataset = create_dataset(line[2], "Publish")
+ trait_id = line[3]
+ this_trait = GeneralTrait(dataset=dataset, name=trait_id, get_qtl_info=True)
+ self.trait_list.append(this_trait)
+ species = webqtlDatabaseFunction.retrieve_species(dataset.group.name)
+ dataset.get_trait_info([this_trait], species)
diff --git a/wqflask/wqflask/static/new/javascript/search_results.js b/wqflask/wqflask/static/new/javascript/search_results.js
index 7f9ff896..7064b6ff 100755
--- a/wqflask/wqflask/static/new/javascript/search_results.js
+++ b/wqflask/wqflask/static/new/javascript/search_results.js
@@ -57,6 +57,7 @@ $(function() {
i += 1
});
}
+ change_buttons();
});
$('.trait_checkbox:checkbox').change(function() {
diff --git a/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize2.js b/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize2.js
new file mode 100644
index 00000000..6ef9907a
--- /dev/null
+++ b/wqflask/wqflask/static/new/packages/DataTables/extensions/dataTables.colResize2.js
@@ -0,0 +1,943 @@
+var dt;
+(function (dt) {
+ var ColResize = (function () {
+ function ColResize($, api, settings) {
+ this.$ = $;
+ this.tableSize = -1;
+ this.initialized = false;
+ this.dt = {};
+ this.dom = {
+ fixedLayout: false,
+ fixedHeader: null,
+ winResizeTimer: null,
+ mouse: {
+ startX: -1,
+ startWidth: null
+ },
+ table: {
+ prevWidth: null
+ },
+ origState: true,
+ resize: false,
+ scrollHead: null,
+ scrollHeadTable: null,
+ scrollFoot: null,
+ scrollFootTable: null,
+ scrollFootInner: null,
+ scrollBody: null,
+ scrollBodyTable: null,
+ scrollX: false,
+ scrollY: false
+ };
+ this.settings = this.$.extend(true, {}, dt.ColResize.defaultSettings, settings);
+ this.dt.settings = api.settings()[0];
+ this.dt.api = api;
+ this.dt.settings.colResize = this;
+ this.registerCallbacks();
+ }
+ ColResize.prototype.initialize = function () {
+ var _this = this;
+ this.$.each(this.dt.settings.aoColumns, function (i, col) {
+ return _this.setupColumn(col);
+ });
+
+ //Initialize fixedHeader if specified
+ if (this.settings.fixedHeader)
+ this.setupFixedHeader();
+
+ //Save scroll head and body if found
+ this.dom.scrollHead = this.$('div.' + this.dt.settings.oClasses.sScrollHead, this.dt.settings.nTableWrapper);
+ this.dom.scrollHeadInner = this.$('div.' + this.dt.settings.oClasses.sScrollHeadInner, this.dom.scrollHead);
+ this.dom.scrollHeadTable = this.$('div.' + this.dt.settings.oClasses.sScrollHeadInner + ' > table', this.dom.scrollHead);
+
+ this.dom.scrollFoot = this.$('div.' + this.dt.settings.oClasses.sScrollFoot, this.dt.settings.nTableWrapper);
+ this.dom.scrollFootInner = this.$('div.' + this.dt.settings.oClasses.sScrollFootInner, this.dom.scrollFoot);
+ this.dom.scrollFootTable = this.$('div.' + this.dt.settings.oClasses.sScrollFootInner + ' > table', this.dom.scrollFoot);
+
+ this.dom.scrollBody = this.$('div.' + this.dt.settings.oClasses.sScrollBody, this.dt.settings.nTableWrapper);
+ this.dom.scrollBodyTable = this.$('> table', this.dom.scrollBody);
+ this.dt.api.on('draw.dt', this.onDraw.bind(this));
+ if (this.dom.scrollFootTable) {
+ this.dt.api.on('colPinFcDraw.dt', function (e, colPin, data) {
+ if (data.leftClone.header)
+ _this.$('tfoot', data.leftClone.header).remove();
+ if (data.leftClone.footer)
+ _this.$('thead', data.leftClone.footer).remove();
+ if (data.rightClone.header)
+ _this.$('tfoot', data.rightClone.header).remove();
+ if (data.rightClone.footer)
+ _this.$('thead', data.rightClone.footer).remove();
+ });
+ }
+
+ this.dom.scrollX = this.dt.settings.oInit.sScrollX === undefined ? false : true;
+ this.dom.scrollY = this.dt.settings.oInit.sScrollY === undefined ? false : true;
+
+ //SaveTableWidth
+ this.dt.settings.sTableWidthOrig = this.$(this.dt.settings.nTable).width();
+ this.updateTableSize();
+
+ this.dt.settings.oFeatures.bAutoWidthOrig = this.dt.settings.oFeatures.bAutoWidth;
+ this.dt.settings.oFeatures.bAutoWidth = false;
+
+ if (this.dt.settings.oInit.bStateSave && this.dt.settings.oLoadedState) {
+ this.loadState(this.dt.settings.oLoadedState);
+ }
+
+ this.onDraw();
+ this.dom.table.preWidth = parseFloat(this.dom.scrollBodyTable.css('width'));
+
+ if (!this.dom.scrollX && this.dom.scrollY && this.settings.fixedLayout && this.dt.settings._reszEvt) {
+ //We have to manually resize columns on window resize
+ var eventName = 'resize.DT-' + this.dt.settings.sInstance;
+ this.$(window).off(eventName);
+ this.$(window).on(eventName, function () {
+ _this.proportionallyColumnSizing();
+ //api._fnAdjustColumnSizing(this.dt.settings);
+ });
+ }
+
+ if (this.dom.scrollX || this.dom.scrollY) {
+ this.dt.api.on('column-sizing.dt', this.fixFootAndHeadTables.bind(this));
+ this.dt.api.on('column-visibility.dt', this.fixFootAndHeadTables.bind(this));
+ }
+
+ this.initialized = true;
+ this.dt.settings.oApi._fnCallbackFire(this.dt.settings, 'colResizeInitCompleted', 'colResizeInitCompleted', [this]);
+ };
+
+ ColResize.prototype.setupColumn = function (col) {
+ var _this = this;
+ var $th = this.$(col.nTh);
+ if (col.resizable === false)
+ return;
+
+ // listen to mousemove event for resize
+ $th.on('mousemove.ColResize', function (e) {
+ if (_this.dom.resize || col.resizable === false)
+ return;
+
+ /* Store information about the mouse position */
+ var $thTarget = e.target.nodeName.toUpperCase() == 'TH' ? _this.$(e.target) : _this.$(e.target).closest('TH');
+ var offset = $thTarget.offset();
+ var nLength = $thTarget.innerWidth();
+
+ /* are we on the col border (if so, resize col) */
+ if (Math.abs(e.pageX - Math.round(offset.left + nLength)) <= 5) {
+ $thTarget.css({ 'cursor': 'col-resize' });
+ } else
+ $thTarget.css({ 'cursor': 'pointer' });
+ });
+
+ //Save the original width
+ col._ColResize_sWidthOrig = col.sWidthOrig;
+ col.initWidth = $th.width();
+ col.minWidthOrig = col.minWidth;
+
+ $th.on('dblclick.ColResize', function (e) {
+ _this.onDblClick(e, $th, col);
+ });
+
+ $th.off('mousedown.ColReorder');
+
+ // listen to mousedown event
+ $th.on('mousedown.ColResize', function (e) {
+ return _this.onMouseDown(e, col);
+ });
+ };
+
+ ColResize.prototype.setupFixedHeader = function () {
+ var fhSettings = this.settings.fixedHeader === true ? undefined : this.settings.fixedHeader;
+
+ //If left or right option was set to true disable resizing for the first or last column
+ if (this.$.isPlainObject(fhSettings)) {
+ var columns = this.dt.settings.aoColumns;
+ if (fhSettings.left === true)
+ columns[0].resizable = false;
+ if (fhSettings.right === true)
+ columns[columns.length - 1].resizable = false;
+ }
+
+ this.dom.fixedHeader = new this.$.fn.dataTable.FixedHeader(this.dt.api, fhSettings);
+ var origUpdateClones = this.dom.fixedHeader._fnUpdateClones;
+ var that = this;
+
+ //FixeHeader doesn't have any callback after updating the clones so we have to wrap the orig function
+ this.dom.fixedHeader._fnUpdateClones = function () {
+ origUpdateClones.apply(this, arguments);
+ that.memorizeFixedHeaderNodes();
+ };
+
+ //As we missed the first call of _fnUpdateClones we have to call memorizeFixedHeaderNodes function manually
+ this.memorizeFixedHeaderNodes();
+ };
+
+ ColResize.prototype.memorizeFixedHeaderNodes = function () {
+ var _this = this;
+ var fhSettings = this.dom.fixedHeader.fnGetSettings();
+ var fhCache = fhSettings.aoCache;
+ var i, col;
+ for (i = 0; i < fhCache.length; i++) {
+ var type = fhCache[i].sType;
+ var propName;
+ var selector;
+ switch (type) {
+ case 'fixedHeader':
+ propName = 'fhTh';
+ selector = 'thead>tr>th';
+ this.dt.settings.fhTHead = fhCache[i].nNode;
+ break;
+ case 'fixedFooter':
+ propName = 'fhTf';
+ selector = 'thead>tr>th';
+
+ //prepend a cloned thead to the floating footer table so that resizing will work correctly
+ var tfoot = this.$(fhCache[i].nNode);
+ var thead = this.$(this.dt.settings.nTHead).clone().css({ height: 0, visibility: 'hidden' });
+ this.$('tr', thead).css('height', 0);
+ this.$('tr>th', thead).css({
+ 'height': 0,
+ 'padding-bottom': 0,
+ 'padding-top': 0,
+ 'border-bottom-width': 0,
+ 'border-top-width': 0,
+ 'line-height': 0
+ });
+ tfoot.prepend(thead);
+ this.$('tfoot>tr>th', tfoot).css('width', '');
+ this.dt.settings.fhTFoot = fhCache[i].nNode;
+ break;
+ default:
+ continue;
+ }
+
+ this.$(selector, fhCache[i].nNode).each(function (j, th) {
+ col = _this.getVisibleColumn(j);
+ col[propName] = th;
+ });
+ }
+ };
+
+ //zero based index
+ ColResize.prototype.getVisibleColumn = function (idx) {
+ var columns = this.dt.settings.aoColumns;
+ var currVisColIdx = -1;
+ for (var i = 0; i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ currVisColIdx++;
+ if (currVisColIdx == idx)
+ return columns[i];
+ }
+ return null;
+ };
+
+ ColResize.prototype.updateTableSize = function () {
+ if (this.dom.scrollX && this.dom.scrollHeadTable.length)
+ this.tableSize = this.dom.scrollHeadTable.width();
+ else
+ this.tableSize = -1;
+ };
+
+ ColResize.prototype.proportionallyColumnSizing = function () {
+ var _this = this;
+ var prevWidths = [], newWidths = [], prevWidth, newWidth, newTableWidth, prevTableWidth, moveLength, multiplier, cWidth, i, j, delay = 500, prevTotalColWidths = 0, currTotalColWidths, columnRestWidths = [], columns = this.dt.settings.aoColumns, bodyTableColumns = this.$('thead th', this.dom.scrollBodyTable), headTableColumns = this.$('thead th', this.dom.scrollHeadTable), footTableColumns = this.dom.scrollFootTable.length ? this.$('thead th', this.dom.scrollFootTable) : [], visColumns = [];
+
+ for (i = 0; i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ visColumns.push(columns[i]);
+ columnRestWidths.push(0); //set default value
+ }
+
+ for (i = 0; i < bodyTableColumns.length; i++) {
+ cWidth = parseFloat(bodyTableColumns[i].style.width);
+ prevTotalColWidths += cWidth;
+ prevWidths.push(cWidth);
+ }
+
+ for (i = 0; i < bodyTableColumns.length; i++) {
+ bodyTableColumns[i].style.width = '';
+ }
+
+ //Get the new table width calculated by the browser
+ newTableWidth = parseFloat(this.dom.scrollBodyTable.css('width'));
+
+ //Get the old table width
+ prevTableWidth = this.dom.table.preWidth;
+ moveLength = newTableWidth - prevTableWidth;
+ if (moveLength == 0) {
+ for (i = 0; i < bodyTableColumns.length; i++) {
+ bodyTableColumns[i].style.width = prevWidths[i] + 'px';
+ }
+ return;
+ }
+
+ //var tot = 0;
+ currTotalColWidths = prevTotalColWidths;
+ for (i = 0; i < visColumns.length; i++) {
+ //For each column calculate the new width
+ prevWidth = prevWidths[i];
+ multiplier = (+(prevWidth / prevTotalColWidths).toFixed(2));
+
+ //tot += multiplier;
+ newWidth = prevWidth + (moveLength * multiplier) + columnRestWidths[i];
+ currTotalColWidths -= prevWidth;
+
+ //Check whether the column can be resized to the new calculated value
+ //if not, set it to the min or max width depends on the moveLength value
+ if (!this.canResizeColumn(visColumns[i], newWidth)) {
+ cWidth = moveLength > 0 ? this.getColumnMaxWidth(visColumns[i]) : this.getColumnMinWidth(visColumns[i]);
+ var rest = newWidth - cWidth;
+ newWidth = cWidth;
+
+ for (j = (i + 1); j < visColumns.length; j++) {
+ columnRestWidths[j] += rest * (+(visColumns[j] / currTotalColWidths).toFixed(2));
+ }
+ }
+ newWidths.push(newWidth);
+ }
+
+ //Apply the calculated column widths to the headers cells
+ var tablesWidth = this.dom.scrollBodyTable.outerWidth() + 'px';
+ for (i = 0; i < headTableColumns.length; i++) {
+ headTableColumns[i].style.width = newWidths[i] + 'px';
+ }
+ this.dom.scrollHeadTable.css('width', tablesWidth);
+ this.dom.scrollHeadInner.css('width', tablesWidth);
+
+ for (i = 0; i < bodyTableColumns.length; i++) {
+ bodyTableColumns[i].style.width = newWidths[i] + 'px';
+ }
+
+ if (this.dom.scrollFootTable.length) {
+ for (i = 0; i < footTableColumns.length; i++) {
+ footTableColumns[i].style.width = newWidths[i] + 'px';
+ }
+ this.dom.scrollFootTable[0].style.width = tablesWidth;
+ this.dom.scrollFootInner[0].style.width = tablesWidth;
+ }
+
+ //console.log('moveLength: ' + moveLength + ' multiplier: ' + tot);
+ //console.log(newWidths);
+ this.dom.table.preWidth = newTableWidth;
+
+ //Call afterResizing function after the window stops resizing
+ if (this.dom.winResizeTimer)
+ clearTimeout(this.dom.winResizeTimer);
+ this.dom.winResizeTimer = setTimeout(function () {
+ _this.afterResizing();
+ _this.dom.winResizeTimer = null;
+ }, delay);
+ };
+
+ ColResize.prototype.getColumnIndex = function (col) {
+ //Get the current column position
+ var colIdx = -1;
+ for (var i = 0; i < this.dt.settings.aoColumns.length; i++) {
+ if (this.dt.settings.aoColumns[i] === col) {
+ colIdx = i;
+ break;
+ }
+ }
+ return colIdx;
+ };
+
+ ColResize.prototype.getColumnEvent = function (th, type, ns) {
+ var event;
+ var thEvents = this.$._data(th, "events");
+ this.$.each(thEvents[type] || [], function (idx, handler) {
+ if (handler.namespace === ns)
+ event = handler;
+ });
+ return event;
+ };
+
+ ColResize.prototype.loadState = function (data) {
+ var _this = this;
+ var i, col;
+
+ var onInit = function () {
+ if (_this.settings.fixedLayout) {
+ _this.setTablesLayout('fixed');
+ } else {
+ _this.setTablesLayout('auto');
+ }
+ if (!data.colResize) {
+ if (_this.dt.settings.oFeatures.bAutoWidthOrig)
+ _this.dt.settings.oFeatures.bAutoWidth = true;
+ else if (_this.dt.settings.sTableWidthOrig)
+ _this.$(_this.dt.settings.nTable).width(_this.dt.settings.sTableWidthOrig);
+
+ for (i = 0; i < _this.dt.settings.aoColumns.length; i++) {
+ col = _this.dt.settings.aoColumns[i];
+ if (col._ColResize_sWidthOrig) {
+ col.sWidthOrig = col._ColResize_sWidthOrig;
+ }
+ }
+ _this.dom.origState = true;
+ } else {
+ var columns = data.colResize.columns || [];
+ var wMap = {};
+
+ if (_this.dt.settings.oFeatures.bAutoWidth) {
+ _this.dt.settings.oFeatures.bAutoWidth = false;
+ }
+
+ if (_this.dom.scrollX && data.colResize.tableSize > 0) {
+ _this.dom.scrollHeadTable.width(data.colResize.tableSize);
+ _this.dom.scrollHeadInner.width(data.colResize.tableSize);
+ _this.dom.scrollBodyTable.width(data.colResize.tableSize);
+ _this.dom.scrollFootTable.width(data.colResize.tableSize);
+ }
+
+ for (i = 0; i < columns.length; i++) {
+ wMap[i] = columns[i];
+ }
+ for (i = 0; i < _this.dt.settings.aoColumns.length; i++) {
+ col = _this.dt.settings.aoColumns[i];
+ var idx = col._ColReorder_iOrigCol != null ? col._ColReorder_iOrigCol : i;
+ col.sWidth = wMap[idx];
+ col.sWidthOrig = wMap[idx];
+ col.nTh.style.width = columns[i];
+
+ //Check for FixedHeader
+ if (col.fhTh)
+ col.fhTh.style.width = columns[i];
+ if (col.fhTf)
+ col.fhTf.style.width = columns[i];
+ }
+ _this.dom.origState = false;
+ }
+
+ _this.dt.api.columns.adjust();
+ if (_this.dom.scrollX || _this.dom.scrollY)
+ _this.dt.api.draw(false);
+ };
+
+ if (this.initialized) {
+ onInit();
+ return;
+ }
+ this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'colResizeInitCompleted', function () {
+ onInit();
+ }, "ColResize_Init");
+ };
+
+ ColResize.prototype.saveState = function (data) {
+ if (!this.dt.settings._bInitComplete) {
+ var oData = this.dt.settings.fnStateLoadCallback.call(this.dt.settings.oInstance, this.dt.settings);
+ if (oData && oData.colResize)
+ data.colResize = oData.colResize;
+ return;
+ }
+ this.updateTableSize();
+ data.colResize = {
+ columns: [],
+ tableSize: this.tableSize
+ };
+
+ data.colResize.columns.length = this.dt.settings.aoColumns.length;
+ for (var i = 0; i < this.dt.settings.aoColumns.length; i++) {
+ var col = this.dt.settings.aoColumns[i];
+ var idx = col._ColReorder_iOrigCol != null ? col._ColReorder_iOrigCol : i;
+ data.colResize.columns[idx] = col.sWidth;
+ }
+ };
+
+ ColResize.prototype.registerCallbacks = function () {
+ var _this = this;
+ /* State saving */
+ this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'aoStateSaveParams', function (oS, oData) {
+ _this.saveState(oData);
+ }, "ColResize_StateSave");
+
+ /* State loading */
+ this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'aoStateLoaded', function (oS, oData) {
+ _this.loadState(oData);
+ }, "ColResize_StateLoad");
+
+ if (this.$.fn.DataTable.models.oSettings.remoteStateInitCompleted !== undefined) {
+ //Integrate with remote state
+ this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'remoteStateLoadedParams', function (s, data) {
+ _this.loadState(data);
+ }, "ColResize_StateLoad");
+ this.dt.settings.oApi._fnCallbackReg(this.dt.settings, 'remoteStateSaveParams', function (s, data) {
+ _this.saveState(data);
+ }, "ColResize_StateSave");
+ }
+ };
+
+ ColResize.prototype.setTablesLayout = function (value) {
+ if (this.dom.scrollX || this.dom.scrollY) {
+ this.dom.scrollHeadTable.css('table-layout', value);
+ this.dom.scrollBodyTable.css('table-layout', value);
+ this.dom.scrollFootTable.css('table-layout', value);
+ } else {
+ this.$(this.dt.settings.nTable).css('table-layout', value);
+ }
+ this.dom.fixedLayout = value == 'fixed';
+ };
+
+ //only when scrollX or scrollY are enabled
+ ColResize.prototype.fixFootAndHeadTables = function (e) {
+ var _this = this;
+ if (e != null && e.target !== this.dt.settings.nTable)
+ return;
+
+ if (this.dom.scrollFootTable.length) {
+ this.$('thead', this.dom.scrollFootTable).remove();
+ this.dom.scrollFootTable.prepend(this.$('thead', this.dom.scrollBodyTable).clone());
+ }
+ this.$('tfoot', this.dom.scrollHeadTable).remove();
+ this.dom.scrollHeadTable.append(this.$('tfoot', this.dom.scrollBodyTable).clone());
+ var removeFooterWidth = function (table) {
+ _this.$('tfoot>tr>th', table).each(function (i, th) {
+ _this.$(th).css('width', '');
+ });
+ };
+
+ //Remove all tfoot headers widths
+ removeFooterWidth(this.dom.scrollFootTable);
+ removeFooterWidth(this.dom.scrollBodyTable);
+ removeFooterWidth(this.dom.scrollHeadTable);
+ };
+
+ ColResize.prototype.onDraw = function (e) {
+ if (e != null && e.target !== this.dt.settings.nTable)
+ return;
+ if (this.dom.scrollX || this.dom.scrollY) {
+ this.fixFootAndHeadTables();
+
+ //Fix the header table padding
+ if (this.dt.settings._bInitComplete) {
+ var borderWidth = this.dom.scrollHeadTable.outerWidth() - this.dom.scrollHeadTable.innerWidth();
+ var paddingType = this.dt.settings.oBrowser.bScrollbarLeft ? 'padding-left' : 'padding-right';
+ var paddingVal = parseFloat(this.dom.scrollHeadInner.css(paddingType));
+ this.dom.scrollHeadInner.css(paddingType, (paddingVal + borderWidth) + 'px');
+ }
+ }
+
+ var autoWidthTypes = [];
+ if (this.settings.dblClick == 'autoMinFit' || !this.settings.fixedLayout)
+ autoWidthTypes.push('autoMinWidth');
+ if (this.settings.dblClick == 'autoFit')
+ autoWidthTypes.push('autoWidth');
+
+ //Call this only once so that the table will be cloned only one time
+ if (autoWidthTypes.length)
+ this.updateColumnsAutoWidth(autoWidthTypes);
+
+ if (!this.settings.fixedLayout) {
+ var columns = this.dt.settings.aoColumns;
+ var i;
+ for (i = 0; i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ columns[i].minWidth = Math.max((columns[i].minWidthOrig || 0), columns[i].autoMinWidth);
+
+ //We have to resize if the current column width if is less that the column minWidth
+ if (this.$(columns[i].nTh).width() < columns[i].minWidth)
+ this.resize(columns[i], columns[i].minWidth);
+ }
+ } else {
+ if (!this.dom.fixedLayout) {
+ this.setTablesLayout('fixed');
+ this.afterResizing();
+ }
+ }
+ };
+
+ ColResize.prototype.getTableAutoColWidths = function (table, types) {
+ var widths = {}, i, colIdx;
+ var $table = this.$(table);
+ for (i = 0; i < types.length; i++) {
+ widths[types[i]] = [];
+ }
+ if (!types.length || !$table.length)
+ return widths;
+
+ var clnTable = $table.clone().removeAttr('id').css('table-layout', 'auto');
+
+ // Remove any assigned widths from the footer (from scrolling)
+ clnTable.find('thead th, tfoot th, tfoot td').css('width', '');
+ var container = this.$('<div />').css({
+ 'position': 'absolute',
+ 'width': '9999px',
+ 'height': '9999px'
+ });
+ container.append(clnTable);
+ this.$(this.dt.settings.nTableWrapper).append(container);
+
+ var headerCols = this.$('thead>tr>th', clnTable);
+
+ for (i = 0; i < types.length; i++) {
+ var type = types[i];
+ var fn = '';
+ switch (type) {
+ case 'autoMinWidth':
+ clnTable.css('width', '1px');
+ fn = 'width';
+ break;
+ case 'autoWidth':
+ clnTable.css('width', 'auto');
+ fn = 'outerWidth';
+ break;
+ default:
+ throw 'Invalid widthType ' + type;
+ }
+ for (colIdx = 0; colIdx < headerCols.length; colIdx++) {
+ widths[type].push(this.$(headerCols[colIdx])[fn]());
+ }
+ }
+
+ container.remove();
+ return widths;
+ };
+
+ ColResize.prototype.updateColumnsAutoWidth = function (types) {
+ var columns = this.dt.settings.aoColumns;
+ var i, j, colLen, type, visColIdx = 0;
+ var widths = {};
+ if (this.dom.scrollX || this.dom.scrollY) {
+ var headWidths = this.getTableAutoColWidths(this.dom.scrollHeadTable, types);
+ var bodyWidths = this.getTableAutoColWidths(this.dom.scrollBodyTable, types);
+ var footWidths = this.getTableAutoColWidths(this.dom.scrollFootTable, types);
+
+ for (i = 0; i < types.length; i++) {
+ type = types[i];
+ widths[type] = [];
+ footWidths[type].length = headWidths[type].length;
+ colLen = headWidths[type].length;
+ for (j = 0; j < colLen; j++) {
+ widths[type].push(Math.max(headWidths[type][j], bodyWidths[type][j], (footWidths[type][j] || 0)));
+ }
+ }
+ } else {
+ widths = this.getTableAutoColWidths(this.dt.settings.nTable, types);
+ }
+
+ for (i = 0; i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ for (j = 0; j < types.length; j++) {
+ type = types[j];
+ columns[i][type] = widths[type][visColIdx];
+ }
+ visColIdx++;
+ }
+ };
+
+ ColResize.prototype.overrideClickHander = function (col, $th) {
+ var dtClickEvent = this.getColumnEvent($th.get(0), 'click', 'DT');
+
+ //Remove the DataTables event so that ordering will not occur
+ if (dtClickEvent) {
+ $th.off('click.DT');
+ this.$(document).one('click.ColResize', function (e) {
+ $th.on('click.DT', dtClickEvent.handler);
+ });
+ }
+ };
+
+ ColResize.prototype.onDblClick = function (e, $th, col) {
+ if (e.target !== $th.get(0))
+ return;
+ if ($th.css('cursor') != 'col-resize')
+ return;
+
+ var width;
+ switch (this.settings.dblClick) {
+ case 'autoMinFit':
+ width = col.autoMinWidth;
+ break;
+ case 'autoFit':
+ width = col.autoWidth;
+ break;
+ default:
+ width = col.initWidth;
+ }
+ this.resize(col, width);
+ };
+
+ ColResize.prototype.onMouseDown = function (e, col) {
+ var _this = this;
+ if (e.target !== col.nTh && e.target !== col.fhTh)
+ return true;
+
+ var $th = e.target === col.nTh ? this.$(col.nTh) : this.$(col.fhTh);
+
+ if ($th.css('cursor') != 'col-resize' || col.resizable === false) {
+ var colReorder = this.dt.settings._colReorder;
+ if (colReorder) {
+ colReorder._fnMouseDown.call(colReorder, e, e.target); //Here we fix the e.preventDefault() in ColReorder so that we can have working inputs in header
+ }
+ return true;
+ }
+ this.dom.mouse.startX = e.pageX;
+ this.dom.mouse.prevX = e.pageX;
+ this.dom.mouse.startWidth = $th.width();
+ this.dom.resize = true;
+
+ this.beforeResizing(col);
+
+ /* Add event handlers to the document */
+ this.$(document).on('mousemove.ColResize', function (event) {
+ _this.onMouseMove(event, col);
+ });
+ this.overrideClickHander(col, $th);
+ this.$(document).one('mouseup.ColResize', function (event) {
+ _this.onMouseUp(event, col);
+ });
+
+ return false;
+ };
+
+ ColResize.prototype.resize = function (col, width) {
+ var colWidth = this.$(col.nTh).width();
+ var moveLength = width - this.$(col.nTh).width();
+ this.beforeResizing(col);
+ var resized = this.resizeColumn(col, colWidth, moveLength, moveLength);
+ this.afterResizing();
+ return resized;
+ };
+
+ ColResize.prototype.beforeResizing = function (col) {
+ //if (this.settings.fixedLayout && !this.dom.fixedLayout)
+ // this.setTablesLayout('fixed');
+ };
+
+ ColResize.prototype.afterResizing = function () {
+ var i;
+ var columns = this.dt.settings.aoColumns;
+ for (i = 0; i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ columns[i].sWidth = this.$(columns[i].nTh).css('width');
+ }
+
+ //Update the internal storage of the table's width (in case we changed it because the user resized some column and scrollX was enabled
+ this.updateTableSize();
+
+ //Save the state
+ this.dt.settings.oInstance.oApi._fnSaveState(this.dt.settings);
+ this.dom.origState = false;
+ };
+
+ ColResize.prototype.onMouseUp = function (e, col) {
+ this.$(document).off('mousemove.ColResize');
+ if (!this.dom.resize)
+ return;
+ this.dom.resize = false;
+ this.afterResizing();
+ };
+
+ ColResize.prototype.canResizeColumn = function (col, newWidth) {
+ return (col.resizable === undefined || col.resizable) && this.settings.minWidth <= newWidth && (!col.minWidth || col.minWidth <= newWidth) && (!this.settings.maxWidth || this.settings.maxWidth >= newWidth) && (!col.maxWidth || col.maxWidth >= newWidth);
+ };
+
+ ColResize.prototype.getColumnMaxWidth = function (col) {
+ return col.maxWidth ? col.maxWidth : this.settings.maxWidth;
+ };
+
+ ColResize.prototype.getColumnMinWidth = function (col) {
+ return col.minWidth ? col.minWidth : this.settings.minWidth;
+ };
+
+ ColResize.prototype.getPrevResizableColumnIdx = function (col, moveLength) {
+ var columns = this.dt.settings.aoColumns;
+ var colIdx = ColResizeHelper.indexOf(columns, col);
+ for (var i = colIdx; i >= 0; i--) {
+ if (!columns[i].bVisible)
+ continue;
+ var newWidth = this.$(columns[i].nTh).width() + moveLength;
+ if (this.canResizeColumn(columns[i], newWidth))
+ return i;
+ }
+ return -1;
+ };
+
+ ColResize.prototype.getNextResizableColumnIdx = function (col, moveLength) {
+ var columns = this.dt.settings.aoColumns;
+ var colIdx = ColResizeHelper.indexOf(columns, col);
+ for (var i = (colIdx + 1); i < columns.length; i++) {
+ if (!columns[i].bVisible)
+ continue;
+ var newWidth = this.$(columns[i].nTh).width() - moveLength;
+ if (this.canResizeColumn(columns[i], newWidth))
+ return i;
+ }
+ return -1;
+ };
+
+ ColResize.prototype.resizeColumn = function (col, startWidth, moveLength, lastMoveLength) {
+ if (moveLength == 0 || lastMoveLength == 0 || col.resizable === false)
+ return false;
+ var i;
+ var columns = this.dt.settings.aoColumns;
+ var headCol = this.$(col.nTh);
+ var headColNext = headCol.next();
+ var colIdx = this.getColumnIndex(col);
+ var thWidth = startWidth + moveLength;
+ var thNextWidth;
+ var nextColIdx;
+
+ if (!this.dom.scrollX) {
+ if (lastMoveLength < 0) {
+ thWidth = headColNext.width() - lastMoveLength;
+ nextColIdx = this.getPrevResizableColumnIdx(col, lastMoveLength);
+ if (nextColIdx < 0)
+ return false;
+ headCol = headColNext;
+ colIdx = colIdx + 1;
+ headColNext = this.$(columns[nextColIdx].nTh);
+ thNextWidth = headColNext.width() + lastMoveLength;
+ } else {
+ thWidth = headCol.width() + lastMoveLength;
+ nextColIdx = this.getNextResizableColumnIdx(col, lastMoveLength);
+
+ //If there is no columns that can be shrinked dont resize anymore
+ if (nextColIdx < 0)
+ return false;
+ headColNext = this.$(columns[nextColIdx].nTh);
+ thNextWidth = headColNext.width() - lastMoveLength;
+
+ if ((this.settings.maxWidth && this.settings.maxWidth < thWidth) || col.maxWidth && col.maxWidth < thWidth)
+ return false;
+ }
+ if (!this.canResizeColumn(columns[nextColIdx], thNextWidth) || !this.canResizeColumn(columns[colIdx], thWidth))
+ return false;
+ headColNext.width(thNextWidth);
+
+ //If fixed header is present we have to resize the cloned column too
+ if (this.dom.fixedHeader) {
+ this.$(columns[nextColIdx].fhTh).width(thNextWidth);
+ this.$(columns[colIdx].fhTh).width(thWidth);
+
+ //If fixedfooter was enabled resize that too
+ if (columns[nextColIdx].fhTf) {
+ this.$(columns[nextColIdx].fhTf).width(thNextWidth);
+ this.$(columns[colIdx].fhTf).width(thWidth);
+ }
+ }
+ } else {
+ if (!this.canResizeColumn(col, thWidth))
+ return false;
+ var tSize = this.tableSize + moveLength + 'px';
+ this.dom.scrollHeadInner.css('width', tSize);
+ this.dom.scrollHeadTable.css('width', tSize);
+ this.dom.scrollBodyTable.css('width', tSize);
+ this.dom.scrollFootTable.css('width', tSize);
+ }
+ headCol.width(thWidth);
+
+ //scrollX or scrollY enabled
+ if (this.dom.scrollBody.length) {
+ var colDomIdx = 0;
+ for (i = 0; i < this.dt.settings.aoColumns.length && i != colIdx; i++) {
+ if (this.dt.settings.aoColumns[i].bVisible)
+ colDomIdx++;
+ }
+
+ //Get the table
+ var bodyCol = this.$('thead>tr>th:nth(' + colDomIdx + ')', this.dom.scrollBodyTable);
+ var footCol = this.$('thead>tr>th:nth(' + colDomIdx + ')', this.dom.scrollFootTable);
+
+ //This will happen only when scrollY is used without scrollX
+ if (!this.dom.scrollX) {
+ var nextColDomIdx = 0;
+ for (i = 0; i < this.dt.settings.aoColumns.length && i != nextColIdx; i++) {
+ if (this.dt.settings.aoColumns[i].bVisible)
+ nextColDomIdx++;
+ }
+ var bodyColNext = this.$('thead>tr>th:nth(' + nextColDomIdx + ')', this.dom.scrollBodyTable);
+ var footColNext = this.$('thead>tr>th:nth(' + nextColDomIdx + ')', this.dom.scrollFootTable);
+
+ bodyColNext.width(thNextWidth);
+ if (thWidth > 0)
+ bodyCol.width(thWidth);
+
+ footColNext.width(thNextWidth);
+ if (thWidth > 0)
+ footCol.width(thWidth);
+ }
+
+ //Resize the table and the column
+ if (this.dom.scrollX && thWidth > 0) {
+ bodyCol.width(thWidth);
+ footCol.width(thWidth);
+ }
+ }
+ return true;
+ };
+
+ ColResize.prototype.onMouseMove = function (e, col) {
+ var moveLength = e.pageX - this.dom.mouse.startX;
+ var lastMoveLength = e.pageX - this.dom.mouse.prevX;
+ this.resizeColumn(col, this.dom.mouse.startWidth, moveLength, lastMoveLength);
+ this.dom.mouse.prevX = e.pageX;
+ };
+
+ ColResize.prototype.destroy = function () {
+ };
+ ColResize.defaultSettings = {
+ minWidth: 1,
+ maxWidth: null,
+ fixedLayout: true,
+ fixedHeader: null,
+ dblClick: 'initWidth'
+ };
+ return ColResize;
+ })();
+ dt.ColResize = ColResize;
+
+ var ColResizeHelper = (function () {
+ function ColResizeHelper() {
+ }
+ ColResizeHelper.indexOf = function (arr, item, equalFun) {
+ if (typeof equalFun === "undefined") { equalFun = null; }
+ for (var i = 0; i < arr.length; i++) {
+ if (equalFun) {
+ if (equalFun(arr[i], item))
+ return i;
+ } else if (arr[i] === item)
+ return i;
+ }
+ return -1;
+ };
+ return ColResizeHelper;
+ })();
+ dt.ColResizeHelper = ColResizeHelper;
+})(dt || (dt = {}));
+
+(function ($, window, document, undefined) {
+ //Register events
+ $.fn.DataTable.models.oSettings.colResizeInitCompleted = [];
+
+ //Register api function
+ $.fn.DataTable.Api.register('colResize.init()', function (settings) {
+ var colResize = new dt.ColResize($, this, settings);
+ if (this.settings()[0]._bInitComplete)
+ colResize.initialize();
+ else
+ this.one('init.dt', function () {
+ colResize.initialize();
+ });
+ return null;
+ });
+
+ $.fn.DataTable.Api.register('column().resize()', function (width) {
+ var oSettings = this.settings()[0];
+ var colResize = oSettings.colResize;
+ return colResize.resize(oSettings.aoColumns[this[0][0]], width);
+ });
+
+ //Add as feature
+ $.fn.dataTable.ext.feature.push({
+ "fnInit": function (oSettings) {
+ return oSettings.oInstance.api().colResize.init(oSettings.oInit.colResize);
+ },
+ "cFeature": "J",
+ "sFeature": "ColResize"
+ });
+}(jQuery, window, document, undefined)); \ No newline at end of file
diff --git a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js
index 2a9bdb36..1364bafc 100755
--- a/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js
+++ b/wqflask/wqflask/static/new/packages/DataTables/js/jquery.dataTables.js
@@ -640,7 +640,7 @@
oCol.sWidthOrig = th.attr('width') || null;
// Style attribute
- var t = (th.attr('style') || '').match(/width:\s*(\d+[pxem%]+)/);
+ var t = (th.attr('style') || '').match(/width:\s*(\d+[px|em|%]+)/);
if ( t ) {
oCol.sWidthOrig = t[1];
}
diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index 79eeae9c..af7ddeb6 100755
--- a/wqflask/wqflask/templates/base.html
+++ b/wqflask/wqflask/templates/base.html
@@ -77,10 +77,10 @@
<div class="container-fluid" style="background-color: #d5d5d5; height: 95px;">
<form method="get" action="/gsearch">
- <div class="row" >
+ <div class="row">
<select class="form-control col-xs-2" style="width: 170px; margin-top: 15px; margin-left: 10px;" name="type">
<option value="gene">Genes / Molecules</option>
- <option value="phenotype">Phenotypes</option>
+ <option value="phenotype" {% if type=="phenotype" %}selected{% endif %}>Phenotypes</option>
</select>
<input class="btn btn-primary form-control col-xs-2" style="width: 100px; margin-top: 15px; margin-left: 10px;" type="submit" value="Search All">
<input class="form-control col-xs-6" style="width: 980px; margin-top: 15px; margin-left: 10px;" type="text" name="terms" required>
diff --git a/wqflask/wqflask/templates/gsearch_gene.html b/wqflask/wqflask/templates/gsearch_gene.html
index 1f525c5f..ba2276d4 100755
--- a/wqflask/wqflask/templates/gsearch_gene.html
+++ b/wqflask/wqflask/templates/gsearch_gene.html
@@ -19,7 +19,7 @@
<button class="btn btn-default" id="select_all"><span class="glyphicon glyphicon-ok"></span> Select All</button>
<button class="btn btn-default" id="deselect_all"><span class="glyphicon glyphicon-remove"></span> Deselect All</button>
<button class="btn btn-default" id="invert"><span class="glyphicon glyphicon-resize-vertical"></span> Invert</button>
- <button class="btn btn-default" id="add"><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
+ <button class="btn btn-default" id="add" disabled ><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
<button class="btn btn-primary pull-right"><span class="glyphicon glyphicon-download"></span> Download Table</button>
<input type="text" id="searchbox" class="form-control" style="width: 200px; display: inline;" placeholder="Search This Table For ...">
<input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
@@ -29,35 +29,42 @@
<table class="table table-hover table-striped" id="trait_table">
<thead>
<tr>
- <th>Index</th>
- <th>Symbol</th>
- <th>Record</th>
- <th>Description</th>
- <th>Species</th>
- <th>Group</th>
- <th>Tissue</th>
- <th>Dataset</th>
- <th>Chr</th>
- <th>Mb</th>
- <th>Mean</th>
- <th>Max LRS</th>
- <th>Locus</th>
- <th>Pvalue</th>
- <th>Additive</th>
+ <th style="width: 30px;"></th>
+ <th>Index</th>
+ <th>Species</th>
+ <th>Group</th>
+ <th>Tissue</th>
+ <th>Dataset</th>
+ <th>Record</th>
+ <th>Symbol</th>
+ <th>Description</th>
+ <th>Location</th>
+ <th>Mean</th>
+ <th style="text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+ <th>Max LRS Location</th>
+ <th style="text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
</tr>
</thead>
-
<tbody>
- {% for this_trait in results %}
- <TR>
- <td><input class="trait_checkbox" type="checkbox">{{ loop.index }}</td>
- {% for item in this_trait %}
- <TD>{{ item }}</TD>
- {% endfor %}
+ {% for this_trait in trait_list %}
+ <TR id="trait:{{ this_trait.name }}:{{ this_trait.dataset.name }}">
+ <TD><INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" VALUE="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) }}"></TD>
+ <TD>{{ loop.index }}</TD>
+ <TD>{{ this_trait.dataset.group.species }}</TD>
+ <TD>{{ this_trait.dataset.group.name }}</TD>
+ <TD>{{ this_trait.dataset.name }}</TD>
+ <TD>{{ this_trait.dataset.name }}</TD>
+ <TD><a href="{{ url_for('show_trait_page', trait_id = this_trait.name, dataset = this_trait.dataset.name)}}">{{ this_trait.name }}</a></TD>
+ <TD>{{ this_trait.symbol }}</TD>
+ <TD>{{ this_trait.description_display }}</TD>
+ <TD>{{ this_trait.location_repr }}</TD>
+ <TD align="right">{{ '%0.3f' % this_trait.mean|float }}</TD>
+ <TD align="right">{{ '%0.3f' % this_trait.LRS_score_repr|float }}</TD>
+ <TD>{{ this_trait.LRS_location_repr }}</TD>
+ <TD align="right">{{ '%0.3f' % this_trait.additive|float }}</TD>
</TR>
{% endfor %}
</tbody>
-
</table>
</div>
</div>
@@ -71,8 +78,8 @@
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.js"></script>
<script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedcolumns/3.0.4/js/dataTables.fixedColumns.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/packages/DT_bootstrap/DT_bootstrap.js"></script>
@@ -149,7 +156,6 @@
$('#trait_table').DataTable( {
"columns": [
{ "type": "natural" },
- { "type": "natural" },
{ "type": "natural", "width": "35%" },
{ "type": "natural", "width": "15%" },
{ "type": "cust-txt" },
@@ -161,16 +167,14 @@
{ "type": "natural", "width": "15%" },
{ "type": "natural" },
{ "type": "natural" },
- { "type": "natural" },
+ { "type": "natural" },
{ "type": "cust-txt" }
],
- "sDom": "RJtir",
- "iDisplayLength": -1,
+ "order": [[ 1, "asc" ]],
+ "sDom": "RZtir",
"autoWidth": true,
"bLengthChange": true,
"bDeferRender": true,
- "bSortClasses": false,
- "scrollY": "700px",
"scrollCollapse": false,
"colResize": {
"tableWidthFixed": false,
diff --git a/wqflask/wqflask/templates/gsearch_pheno.html b/wqflask/wqflask/templates/gsearch_pheno.html
index f6b6efa3..e1dcf76f 100755
--- a/wqflask/wqflask/templates/gsearch_pheno.html
+++ b/wqflask/wqflask/templates/gsearch_pheno.html
@@ -19,37 +19,45 @@
<button class="btn btn-default" id="select_all"><span class="glyphicon glyphicon-ok"></span> Select All</button>
<button class="btn btn-default" id="deselect_all"><span class="glyphicon glyphicon-remove"></span> Deselect All</button>
<button class="btn btn-default" id="invert"><span class="glyphicon glyphicon-resize-vertical"></span> Invert</button>
- <button class="btn btn-default" id="add"><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
+ <button class="btn btn-default" id="add" disabled ><span class="glyphicon glyphicon-plus-sign"></span> Add</button>
<button class="btn btn-primary pull-right"><span class="glyphicon glyphicon-download"></span> Download Table</button>
+ <input type="text" id="searchbox" class="form-control" style="width: 200px; display: inline;" placeholder="Search This Table For ...">
+ <input type="text" id="select_top" class="form-control" style="width: 200px; display: inline;" placeholder="Select Top ...">
<br />
<br />
- <table class="table table-hover table-striped" id="trait_table">
+ <table class="table table-hover table-striped" id='trait_table' style="float: left;">
<thead>
<tr>
- <th>Index</th>
- <th>Species</th>
- <th>Group</th>
- <th>Record ID</th>
- <th>Phenotype</th>
- <th>Authors</th>
- <th>Year</th>
- <th>Max LRS</th>
- <th>Locus</th>
- <th>Additive</th>
+ <th style="width: 30px;"></th>
+ <th>Index</th>
+ <th>Species</th>
+ <th>Group</th>
+ <th>Record</th>
+ <th>Description</th>
+ <th>Authors</th>
+ <th>Year</th>
+ <th style="text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+ <th>Max LRS Location</th>
+ <th style="text-align: right;">Additive<br>Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
</tr>
</thead>
-
<tbody>
- {% for this_trait in results %}
- <TR>
- <td><input type="checkbox">{{ loop.index }}</td>
- {% for item in this_trait %}
- <TD>{{ item }}</TD>
- {% endfor %}
+ {% for this_trait in trait_list %}
+ <TR id="trait:{{ this_trait.name }}:{{ this_trait.dataset.name }}">
+ <TD><INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" VALUE="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) }}"></TD>
+ <TD>{{ loop.index }}</TD>
+ <TD>{{ this_trait.dataset.group.species }}</TD>
+ <TD>{{ this_trait.dataset.group.name }}</TD>
+ <TD><a href="{{ url_for('show_trait_page', trait_id = this_trait.name, dataset = this_trait.dataset.name)}}">{{ this_trait.name }}</a></TD>
+ <TD>{{ this_trait.description_display }}</TD>
+ <TD>{{ this_trait.authors }}</TD>
+ <TD><a href="{{ this_trait.pubmed_link }}">{{ this_trait.pubmed_text }}</a></TD>
+ <TD>{{ this_trait.LRS_score_repr }}</TD>
+ <TD>{{ this_trait.LRS_location_repr }}</TD>
+ <TD>{{ '%0.3f' % this_trait.additive|float }}</TD>
</TR>
{% endfor %}
</tbody>
-
</table>
</div>
</div>
@@ -59,11 +67,11 @@
{% endblock %}
{% block js %}
- <script type="text/javascript" src="/static/new/javascript/search_results.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/javascript/search_results.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize2.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.fixedHeader.js"></script>
<script language="javascript" type="text/javascript" src="//cdn.datatables.net/fixedcolumns/3.0.4/js/dataTables.fixedColumns.min.js"></script>
@@ -118,18 +126,20 @@
console.time("Creating table");
$('#trait_table').DataTable( {
"columns": [
+ { "bSortClasses": false },
+ { "type": "natural" },
+ { "type": "natural" },
+ { "type": "natural" },
+ { "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
- { "type": "natural" },
- { "type": "natural" },
- { "type": "natural" },
- { "type": "natural" },
- { "type": "natural" }
+ { "type": "natural" }
],
- "sDom": "RJtir",
+ "order": [[ 1, "asc" ]],
+ "sDom": "RJtir",
"iDisplayLength": -1,
"autoWidth": true,
"bLengthChange": true,
diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html
index ca5f28d9..62dc4fb4 100755
--- a/wqflask/wqflask/templates/search_result_page.html
+++ b/wqflask/wqflask/templates/search_result_page.html
@@ -54,6 +54,7 @@
<table class="table table-hover table-striped" id='trait_table' {% if dataset.type == 'Geno' %}width="400px"{% endif %} style="float: left;">
<thead>
<tr>
+ <th style="width: 30px;"></th>
{% for header in header_fields %}
{% if header == 'Max LRS' %}
<th style="text-align: right;">Max&nbsp;&nbsp;<br>LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
@@ -69,10 +70,9 @@
<tbody>
{% for this_trait in trait_list %}
<TR id="trait:{{ this_trait.name }}:{{ this_trait.dataset.name }}">
- <TD>{{ loop.index }}
- <INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox"
- VALUE="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) }}">
+ <TD><INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="transform: scale(1.5);" VALUE="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) }}">
</TD>
+ <TD>{{ loop.index }}</TD>
<TD>
<a href="{{ url_for('show_trait_page',
trait_id = this_trait.name,
@@ -183,6 +183,7 @@
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
+ { "type": "natural" },
{ "type": "natural", "width": "30%" },
{ "type": "natural", "width": "15%" },
{ "type": "natural" },
@@ -209,6 +210,7 @@
{ "type": "natural" },
{ "type": "natural" },
{ "type": "natural" },
+ { "type": "natural" },
{ "type": "natural", "width": "15%"},
{ "type": "natural" }
],
@@ -226,6 +228,7 @@
"columns": [
{ "type": "natural" },
{ "type": "natural" },
+ { "type": "natural" },
{ "type": "natural", "width": "40%"}
],
"sDom": "RZtir",