diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/tests/base/test_data_set.py | 103 |
1 files changed, 90 insertions, 13 deletions
diff --git a/wqflask/tests/base/test_data_set.py b/wqflask/tests/base/test_data_set.py index 3ac1b6d6..94780a5d 100644 --- a/wqflask/tests/base/test_data_set.py +++ b/wqflask/tests/base/test_data_set.py @@ -12,6 +12,19 @@ class TestDataSetTypes(unittest.TestCase): """Tests for the DataSetType class""" def setUp(self): + self.test_dataset = """ + { + "AD-cases-controls-MyersGeno": "Geno", + "AD-cases-controls-MyersPublish": "Publish", + "AKXDGeno": "Geno", + "AXBXAGeno": "Geno", + "AXBXAPublish": "Publish", + "Aging-Brain-UCIPublish": "Publish", + "All Phenotypes": "Publish", + "B139_K_1206_M": "ProbeSet", + "B139_K_1206_R": "ProbeSet" + } + """ self.app_context = app.app_context() self.app_context.push() @@ -27,19 +40,7 @@ class TestDataSetTypes(unittest.TestCase): with app.app_context(): db_mock.get = mock.Mock() redis_mock = mock.Mock() - redis_mock.get.return_value = """ - { - "AD-cases-controls-MyersGeno": "Geno", - "AD-cases-controls-MyersPublish": "Publish", - "AKXDGeno": "Geno", - "AXBXAGeno": "Geno", - "AXBXAPublish": "Publish", - "Aging-Brain-UCIPublish": "Publish", - "All Phenotypes": "Publish", - "B139_K_1206_M": "ProbeSet", - "B139_K_1206_R": "ProbeSet" - } - """ + redis_mock.get.return_value = self.test_dataset self.assertEqual(DatasetType(redis_mock) ("All Phenotypes"), "Publish") redis_mock.get.assert_called_once_with("dataset_structure") @@ -61,3 +62,79 @@ class TestDataSetTypes(unittest.TestCase): redis_mock.set.assert_called_once_with( "dataset_structure", '{"BXDGeno": "Geno", "BXDPublish": "Publish", "HLCPublish": "Publish", "HLC_0311": "ProbeSet", "HC_M2_0606_P": "ProbeSet"}') + + @mock.patch('base.data_set.g') + def test_set_dataset_key_mrna(self, db_mock): + with app.app_context(): + db_mock.db.execute.return_value = [1, 2, 3] + redis_mock = mock.Mock() + redis_mock.get.return_value = self.test_dataset + data_set = DatasetType(redis_mock) + data_set.set_dataset_key("mrna_expr", "Test") + self.assertEqual(data_set("Test"), "ProbeSet") + redis_mock.set.assert_called_once_with( + "dataset_structure", + '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "ProbeSet", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}') + expected_db_call = """""" + db_mock.db.execute.assert_called_with( + ("SELECT ProbeSetFreeze.Id FROM ProbeSetFreeze " + + "WHERE ProbeSetFreeze.Name = \"Test\" ") + ) + + @mock.patch('base.data_set.g') + def test_set_dataset_key_pheno(self, db_mock): + with app.app_context(): + db_mock.db.execute.return_value = [1, 2, 3] + redis_mock = mock.Mock() + redis_mock.get.return_value = self.test_dataset + data_set = DatasetType(redis_mock) + data_set.set_dataset_key("pheno", "Test") + self.assertEqual(data_set("Test"), "Publish") + redis_mock.set.assert_called_once_with( + "dataset_structure", + '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}') + expected_db_call = """""" + db_mock.db.execute.assert_called_with( + ("SELECT InfoFiles.GN_AccesionId " + + "FROM InfoFiles, PublishFreeze, InbredSet " + + "WHERE InbredSet.Name = 'Test' AND " + "PublishFreeze.InbredSetId = InbredSet.Id AND " + + "InfoFiles.InfoPageName = PublishFreeze.Name") + ) + + @mock.patch('base.data_set.g') + def test_set_dataset_other_pheno(self, db_mock): + with app.app_context(): + db_mock.db.execute.return_value = [1, 2, 3] + redis_mock = mock.Mock() + redis_mock.get.return_value = self.test_dataset + data_set = DatasetType(redis_mock) + data_set.set_dataset_key("other_pheno", "Test") + self.assertEqual(data_set("Test"), "Publish") + redis_mock.set.assert_called_once_with( + "dataset_structure", + '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Publish", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}') + expected_db_call = """""" + db_mock.db.execute.assert_called_with( + ("SELECT PublishFreeze.Name " + + "FROM PublishFreeze, InbredSet " + + "WHERE InbredSet.Name = 'Test' AND " + "PublishFreeze.InbredSetId = InbredSet.Id") + ) + + @mock.patch('base.data_set.g') + def test_set_dataset_geno(self, db_mock): + with app.app_context(): + db_mock.db.execute.return_value = [1, 2, 3] + redis_mock = mock.Mock() + redis_mock.get.return_value = self.test_dataset + data_set = DatasetType(redis_mock) + data_set.set_dataset_key("geno", "Test") + self.assertEqual(data_set("Test"), "Geno") + redis_mock.set.assert_called_once_with( + "dataset_structure", + '{"Aging-Brain-UCIPublish": "Publish", "AKXDGeno": "Geno", "B139_K_1206_M": "ProbeSet", "AD-cases-controls-MyersGeno": "Geno", "AD-cases-controls-MyersPublish": "Publish", "All Phenotypes": "Publish", "Test": "Geno", "AXBXAPublish": "Publish", "B139_K_1206_R": "ProbeSet", "AXBXAGeno": "Geno"}') + expected_db_call = """""" + db_mock.db.execute.assert_called_with( + ("SELECT GenoFreeze.Id FROM GenoFreeze WHERE GenoFreeze.Name = \"Test\" ") + ) |