diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/search_results.py | 45 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/search_result_page.html | 2 |
2 files changed, 46 insertions, 1 deletions
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index a82390cb..7134cc24 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -188,6 +188,8 @@ class SearchResultPage: trait_dict['additive'] = "N/A" if not result[8] else f"{result[8]:.3f}" + trait_dict['trait_info_str'] = trait_info_str(trait_dict, self.dataset.type) + # Convert any bytes in dict to a normal utf-8 string for key in trait_dict.keys(): if isinstance(trait_dict[key], bytes): @@ -332,6 +334,49 @@ class SearchResultPage: else: return None +def trait_info_str(trait, dataset_type): + """Provide a string representation for given trait""" + def __trait_desc(trt): + if dataset_type == "Geno": + return f"Marker: {trait['display_name']}" + return trait['description'] or "N/A" + + def __symbol(trt): + if dataset_type == "ProbeSet": + return (trait['symbol'] or "N/A")[:20] + + def __lrs(trt): + if dataset_type == "Geno": + return 0 + else: + if trait['lod_score'] != "N/A": + return ( + f"{float(trait['lod_score']):0.3f}" if float(trait['lod_score']) > 0 + else f"{trait['lod_score']}") + else: + return "N/A" + + def __lrs_location(trt): + if 'lrs_location' in trait: + return trait['lrs_location'] + else: + return "N/A" + + def __location(trt): + if 'location' in trait: + return trait['location'] + else: + return None + + def __mean(trt): + if 'mean' in trait: + return trait['mean'] + else: + return 0 + + return "{}|||{}|||{}|||{}|||{}|||{}|||{}|||{}".format( + trait['display_name'], trait['dataset'], __trait_desc(trait), __symbol(trait), + __location(trait), __mean(trait), __lrs(trait), __lrs_location(trait)) def get_GO_symbols(a_search): query = """SELECT genes diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html index f0e179da..264b383d 100644 --- a/wqflask/wqflask/templates/search_result_page.html +++ b/wqflask/wqflask/templates/search_result_page.html @@ -200,7 +200,7 @@ 'orderDataType': "dom-checkbox", 'targets': 0, 'render': function(data, type, row, meta) { - return '<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + data.hmac + '">' + return '<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + data.hmac + '" data-trait-info="' + data.trait_info_str + '">' } }, { |