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-rw-r--r--wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py5
1 files changed, 2 insertions, 3 deletions
diff --git a/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py b/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py
index a44ccb00..af20c1b8 100644
--- a/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py
+++ b/wqflask/tests/wqflask/marker_regression/test_gemma_mapping.py
@@ -28,13 +28,12 @@ class TestGemmaMapping(unittest.TestCase):
dataset = AttributeSetter(
{"group": AttributeSetter({"genofile": "genofile.geno"})})
- output_files = "file1"
- use_loco = False
+ output_file = "file1"
mock_parse_loco.return_value = []
this_trait = AttributeSetter({"name": "t1"})
result = run_gemma(this_trait=this_trait, this_dataset=dataset, samples=[], vals=[
- ], covariates="", use_loco=True, first_run=False, output_files=output_files)
+ ], covariates="", use_loco=True, first_run=False, output_files=output_file)
expected_results = ([], "file1")
self.assertEqual(expected_results, result)