diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/show_trait.js | 156 |
1 files changed, 75 insertions, 81 deletions
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index cde92160..8b9a57a3 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -654,6 +654,7 @@ hide_no_value = function() { })(this)); }; $('#hide_no_value').click(hide_no_value); + block_outliers = function() { return $('.outlier').each((function(_this) { return function(_index, element) { @@ -662,6 +663,7 @@ block_outliers = function() { })(this)); }; $('#block_outliers').click(block_outliers); + reset_samples_table = function() { $('input[name="transform"]').val(""); $('span[name="transform_text"]').text("") @@ -677,96 +679,56 @@ $('.reset').click(function() { edit_data_change(); }); -log2_normalize_data = function(zero_to_one_vals_exist) { - return $('.trait_value_input').each((function(_this) { - return function(_index, element) { - current_value = $(element).data("value") - if(isNaN(current_value)) { - return current_value - } else { - if (zero_to_one_vals_exist){ - current_value = parseFloat(current_value) + 1; - } - $(element).val(Math.log2(current_value).toFixed(3)); - return Math.log2(current_value).toFixed(3) - } - }; - })(this)); +log2_data = function(this_node) { + current_value = this_node.value; + if(!isNaN(current_value)) { + if (zero_to_one_vals_exist){ + current_value = parseFloat(current_value) + 1; + } + this_node.value = Math.log2(current_value).toFixed(3); + } }; -log10_normalize_data = function(zero_to_one_vals_exist) { - return $('.trait_value_input').each((function(_this) { - return function(_index, element) { - current_value = $(element).data("value") - if(isNaN(current_value)) { - return current_value - } else { - if (zero_to_one_vals_exist){ - current_value = parseFloat(current_value) + 1; - } - $(element).val(Math.log10(current_value).toFixed(3)); - return Math.log10(current_value).toFixed(3) - } - }; - })(this)); +log10_data = function() { + current_value = this_node.value; + if(!isNaN(current_value)) { + if (zero_to_one_vals_exist){ + current_value = parseFloat(current_value) + 1; + } + this_node.value = Math.log10(current_value).toFixed(3); + } }; -sqrt_normalize_data = function() { - return $('.edit_sample_value').each((function(_this) { - return function(_index, element) { - current_value = parseFloat($(element).data("value")) + 1; - if(isNaN(current_value)) { - return current_value - } else { - $(element).val(Math.sqrt(current_value).toFixed(3)); - return Math.sqrt(current_value).toFixed(3) - } - }; - })(this)); +sqrt_data = function() { + current_value = this_node.value; + if(!isNaN(current_value)) { + this_node.value = Math.sqrt(current_value).toFixed(3); + } }; invert_data = function() { - return $('.edit_sample_value').each((function(_this) { - return function(_index, element) { - current_value = parseFloat($(element).val()); - if(isNaN(current_value)) { - return current_value - } else { - $(element).val(-(current_value)); - return -(current_value) - } - }; - })(this)); + current_value = this_node.value; + if(!isNaN(current_value)) { + this_node.value = -(current_value); + } }; qnorm_data = function() { - return $('.edit_sample_value').each((function(_this) { - return function(_index, element) { - current_value = parseFloat($(element).data("value")) + 1; - if(isNaN(current_value)) { - return current_value - } else { - $(element).val($(element).data("qnorm")); - return $(element).data("qnorm"); - } - }; - })(this)); + current_value = this_node.value; + qnorm_value = this_node.attributes['data-qnorm'].value; + if(!isNaN(current_value)) { + this_node.value = qnorm_value; + } }; zscore_data = function() { - return $('.edit_sample_value').each((function(_this) { - return function(_index, element) { - current_value = parseFloat($(element).data("value")) + 1; - if(isNaN(current_value)) { - return current_value - } else { - $(element).val($(element).data("zscore")); - return $(element).data("zscore"); - } - }; - })(this)); + current_value = this_node.value; + qnorm_value = this_node.attributes['data-zscore'].value; + if(!isNaN(current_value)) { + this_node.value = qnorm_value; + } }; check_for_zero_to_one_vals = function() { @@ -786,15 +748,47 @@ check_for_zero_to_one_vals = function() { return zero_to_one_vals_exist } +do_transform = function(transform_type) { + tables = ['samples_primary', 'samples_other']; + for (_i = 0, _len = tables.length; _i < _len; _i++) { + table = tables[_i]; + if ($('#' + table).length) { + table_api = $('#' + table).DataTable(); + val_nodes = table_api.column(3).nodes().to$(); + for (i = 0; i < val_nodes.length; i++) { + this_node = val_nodes[i].childNodes[0] + if (transform_type == "log2"){ + log2_data(this_node) + } + if (transform_type == "log10"){ + log10_data(this_node) + } + if (transform_type == "sqrt"){ + sqrt_data(this_node) + } + if (transform_type == "invert"){ + invert_data(this_node) + } + if (transform_type == "qnorm"){ + qnorm_data(this_node) + } + if (transform_type == "zscore"){ + zscore_data(this_node) + } + } + } + } +} + normalize_data = function() { if ($('#norm_method option:selected').val() == 'log2' || $('#norm_method option:selected').val() == 'log10'){ if ($('input[name="transform"]').val() != "log2" && $('#norm_method option:selected').val() == 'log2') { - log2_normalize_data(zero_to_one_vals_exist) + do_transform("log2") $('input[name="transform"]').val("log2") $('span[name="transform_text"]').text(" - log2 transformed") } else { if ($('input[name="transform"]').val() != "log10" && $('#norm_method option:selected').val() == 'log10'){ - log10_normalize_data(zero_to_one_vals_exist) + do_transform("log10") $('input[name="transform"]').val("log10") $('span[name="transform_text"]').text(" - log10 transformed") } @@ -802,26 +796,26 @@ normalize_data = function() { } else if ($('#norm_method option:selected').val() == 'sqrt'){ if ($('input[name="transform"]').val() != "sqrt") { - sqrt_normalize_data() + do_transform("sqrt") $('input[name="transform"]').val("sqrt") $('span[name="transform_text"]').text(" - Square Root transformed") } } else if ($('#norm_method option:selected').val() == 'invert'){ - invert_data() + do_transform("invert") $('input[name="transform"]').val("inverted") $('span[name="transform_text"]').text(" - Inverted") } else if ($('#norm_method option:selected').val() == 'qnorm'){ if ($('input[name="transform"]').val() != "qnorm") { - qnorm_data() + do_transform("qnorm") $('input[name="transform"]').val("qnorm") $('span[name="transform_text"]').text(" - Quantile Normalized") } } else if ($('#norm_method option:selected').val() == 'zscore'){ if ($('input[name="transform"]').val() != "zscore") { - zscore_data() + do_transform("zscore") $('input[name="transform"]').val("zscore") $('span[name="transform_text"]').text(" - Z-Scores") } |