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-rw-r--r--wqflask/wqflask/correlation/show_corr_results.py22
-rw-r--r--wqflask/wqflask/templates/correlation_page.html51
2 files changed, 58 insertions, 15 deletions
diff --git a/wqflask/wqflask/correlation/show_corr_results.py b/wqflask/wqflask/correlation/show_corr_results.py
index 24432ad0..bb109f60 100644
--- a/wqflask/wqflask/correlation/show_corr_results.py
+++ b/wqflask/wqflask/correlation/show_corr_results.py
@@ -120,8 +120,15 @@ class CorrelationResults(object):
self.min_expr = float(start_vars['min_expr'])
else:
self.min_expr = None
- self.p_range_lower = float(start_vars['p_range_lower'])
- self.p_range_upper = float(start_vars['p_range_upper'])
+ logger.debug("P RANGE:", start_vars['p_range_lower'])
+ try:
+ self.p_range_lower = float(start_vars['p_range_lower'])
+ except:
+ self.p_range_lower = -1.00
+ try:
+ self.p_range_upper = float(start_vars['p_range_upper'])
+ except:
+ self.p_range_upper = 1.00
if ('loc_chr' in start_vars and
'min_loc_mb' in start_vars and
@@ -1153,6 +1160,17 @@ class CorrelationResults(object):
import math
import reaper
+ def cmpOrder2(A,B):
+ try:
+ if A[-1] < B[-1]:
+ return -1
+ elif A[-1] == B[-1]:
+ return 0
+ else:
+ return 1
+ except:
+ return 0
+
def calCorrelation(dbdata,userdata,N):
X = []
Y = []
diff --git a/wqflask/wqflask/templates/correlation_page.html b/wqflask/wqflask/templates/correlation_page.html
index fa9e3585..c7fb7cc6 100644
--- a/wqflask/wqflask/templates/correlation_page.html
+++ b/wqflask/wqflask/templates/correlation_page.html
@@ -1,9 +1,10 @@
{% extends "base.html" %}
{% block css %}
+ <link rel="stylesheet" type="text/css" href="/static/new/packages/tabulator/css/tabulator.css" />
+ <!--
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" />
- <link rel="stylesheet" type="text/css" href="/static/packages/DT_bootstrap/DT_bootstrap.css" />
- <link rel="stylesheet" type="text/css" href="/static/packages/TableTools/media/css/TableTools.css" />
<link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/buttons.bootstrap.css" />
+ -->
{% endblock %}
{% block content %}
@@ -63,15 +64,14 @@
</div>
<div style="width: {% if target_dataset.type == "ProbeSet" %}1600px{% elif target_dataset.type == "Publish" %}1400px{% else %}800px{% endif %};">
- <table id="trait_table" class="display dataTable nowrap" style="float: left;">
+ <table id="trait_table" class="display dataTable nowrap" style="font-size: 12px; float: left;">
<thead>
<tr>
- <th style="width: 30px;"></th>
{% for header in target_dataset.header_fields %}
{% if header == 'Year' %}
<th>{{header}}</th>
{% elif header == 'Max LRS' %}
- <th>Max LRS<a href="http://genenetwork.org//glossary.html#L" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+ <th>Max LRS</th>
{% elif header == 'Max LRS Location' %}
<th>{{header}}</th>
{% elif header == 'Location' %}
@@ -79,7 +79,7 @@
{% elif header == 'Mean' %}
<th>{{header}}</th>
{% elif header == 'Additive Effect' %}
- <th>Additive Effect<a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup style="color:#f00"> ?</sup></a></th>
+ <th>Additive Effect</th>
{% elif header == 'Index' %}
<th>{{header}}</th>
{% elif header == 'N' %}
@@ -91,7 +91,7 @@
{% if target_dataset.type == "ProbeSet" %}
{% if corr_method == 'pearson' %}
<th>Sample r</th>
- <th>&nbsp;&nbsp;N</th>
+ <th>N</th>
<th>Sample p(r)</th>
<th>Lit r</th>
<th>Tissue r</th>
@@ -129,8 +129,7 @@
<tbody>
{% for trait in correlation_results %}
<tr>
- <td style="padding-left: 8px; padding-right: 0px; padding-top: 4px; align: center;"><INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="padding-right: 0px;" VALUE="{{ data_hmac('{}:{}'.format(trait.name, trait.dataset.name)) }}"></td>
- <td align="right">{{ loop.index }}</td>
+ <td style="padding-left: 8px; padding-right: 0px; padding-top: 4px; align: center;"><span style="white-space: nowrap;">{{ loop.index }}<INPUT TYPE="checkbox" NAME="searchResult" class="checkbox trait_checkbox" style="padding-right: 0px;" VALUE="{{ data_hmac('{}:{}'.format(trait.name, trait.dataset.name)) }}"></span></td>
<td>
<a href="{{ url_for('show_trait_page',
trait_id = trait.name,
@@ -191,13 +190,17 @@
{% block js %}
<script type="text/javascript" src="/static/new/javascript/search_results.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/js_external/jszip.min.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script>
+ <script language="javascript" type="text/javascript" src="/static/new/packages/tabulator/js/tabulator.js"></script>
+ <!--
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/dataTables.buttons.min.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/buttons.html5.min.js"></script>
<script language="javascript" type="text/javascript" src="https://cdn.datatables.net/buttons/1.0.0/js/buttons.bootstrap.min.js"></script>
- <script language="javascript" type="text/javascript" src="/static/new/js_external/jszip.min.js"></script>
<script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script>
- <script language="javascript" type="text/javascript" src="/static/packages/underscore/underscore-min.js"></script>
+ -->
+
<script type="text/javascript" charset="utf-8">
function getValue(x) {
if (x.indexOf('input') >= 0) {
@@ -213,7 +216,8 @@
}
return parseFloat(x);
}
-
+
+/*
jQuery.fn.dataTableExt.oSort['numeric-html-asc'] = function(a,b) {
a = Math.abs(parseFloat($(a).text()));
b = Math.abs(parseFloat($(b).text()));
@@ -259,10 +263,29 @@
var y = parseFloat(b);
return ((x < y) ? 1 : ((x > y) ? -1 : 0));
};
-
+*/
$(document).ready( function () {
+ $("#trait_table").tabulator({
+ columns:[
+ {title:"Index", formatter:"html"},
+ {title:"Record", formatter:"html"},
+ {title:"Symbol", formatter:"plaintext"},
+ {title:"Description", formatter:"textarea", width:"25%"},
+ {title:"Location", formatter:"plaintext"},
+ {title:"Mean", formatter:"plaintext"},
+ {title:"Max LRS", formatter:"plaintext"},
+ {title:"Max LRS Location", formatter:"plaintext"},
+ {title:"Additive Effect", formatter:"plaintext"},
+ {title:"Sample r", formatter:"html"},
+ {title:"N", formatter:"plaintext"},
+ {title:"Sample p(r)", formatter:"plaintext"},
+ {title:"Lit r", formatter:"plaintext"},
+ {title:"Tissue r", formatter:"plaintext"}
+ ]
+ });
+
$('#trait_table tr').click(function(event) {
if (event.target.type !== 'checkbox') {
$(':checkbox', this).trigger('click');
@@ -296,6 +319,7 @@
}
}
+ /*
console.time("Creating table");
{% if target_dataset.type == "ProbeSet" %}
@@ -447,6 +471,7 @@
} );
{% endif %}
console.timeEnd("Creating table");
+ */
submit_special = function(url) {
$("#correlation_form").attr("action", url);