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-rw-r--r--wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee74
-rw-r--r--wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js95
-rw-r--r--wqflask/wqflask/static/new/js_external/underscore-min.js32
-rw-r--r--wqflask/wqflask/static/new/js_external/underscore.string.min.js1
4 files changed, 152 insertions, 50 deletions
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
index 1f59788c..e807ea61 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
@@ -1,6 +1,7 @@
console.log("start_b")
-isNumber = (o) ->
+# this is our isNumber, do not confuse with the underscore.js one
+is_number = (o) ->
return ! isNaN (o-0) && o != null
$ ->
@@ -21,38 +22,64 @@ $ ->
mean = (the_values)->
- total = 0
- total += value for value in the_values
- the_mean = total / the_values.length
- the_mean = the_mean.toFixed(2)
- current_mean = parseFloat($("#mean_value").html).toFixed(2)
- if the_mean != current_mean
- $("#mean_value").html(the_mean).effect("highlight")
-
- n_of_samples = the_values.length
- current_n_of_samples = $("#n_of_samples_value").html()
- console.log("cnos:", current_n_of_samples)
- console.log("n_of_samples:", n_of_samples)
- if n_of_samples != current_n_of_samples
- $("#n_of_samples_value").html(current_n_of_samples).effect("highlight")
+ for category in ['primary', 'other', 'all']
+ id = "#" + process_id(category, "mean")
+ console.log("id:", id)
+ total = 0
+ total += value for value in the_values[category]
+ the_mean = total / the_values[category].length
+ the_mean = the_mean.toFixed(2)
+ console.log("aaa")
+ in_box = $(id).html
+ console.log("in_box:", in_box)
+ current_mean = parseFloat($(in_box)).toFixed(2)
+ console.log("the_mean:", the_mean)
+ console.log("current_mean:", current_mean)
+ console.log("aab")
+ if the_mean != current_mean
+ console.log("setting mean")
+ $(id).html(the_mean)
+ console.log("should be set")
+ if current_mean and the_mean != current_mean
+ $(id).effect("highlight")
+
+ n_of_samples = the_values[category].length
+ current_n_of_samples = $("#n_of_samples_value").html()
+ console.log("cnos:", current_n_of_samples)
+ console.log("n_of_samples:", n_of_samples)
+ if n_of_samples != current_n_of_samples
+ $("#n_of_samples_value").html(current_n_of_samples).effect("highlight")
edit_data_change = ->
- the_values = []
- values = $('#primary').find(".edit_strain_value")
+ the_values =
+ primary: []
+ other: []
+ all: []
+ console.log("at beginning:", the_values)
+ values = $('#value_table').find(".edit_strain_value")
#console.log("values are:", values)
for value in values
real_value = $(value).val()
#console.log("parent is:", $(value).closest("tr"))
row = $(value).closest("tr")
+ console.log("row is:", row)
+ console.log("row[0].id is:", row[0].id)
+ category = row[0].id
checkbox = $(row).find(".edit_strain_checkbox")
checked = $(checkbox).attr('checked')
if not checked
console.log("Not checked")
continue
- if isNumber(real_value) and real_value != ""
- the_values.push(parseFloat(real_value))
+ if is_number(real_value) and real_value != ""
+ real_value = parseFloat(real_value)
+ if _(category).startsWith("Primary")
+ the_values.primary.push(real_value)
+ else if _(category).startsWith("Other")
+ the_values.other.push(real_value)
+ the_values.all.push(real_value)
+ console.log("torwads end:", the_values)
mean(the_values)
make_table = ->
@@ -93,7 +120,7 @@ $ ->
console.log("apple:", column)
the_id = process_id(column.t, row.vn)
console.log("the_id:", the_id)
- row_line += """<td id="#{ the_id }">&nbsp;</td>"""
+ row_line += """<td id="#{ the_id }">foo</td>"""
row_line += """</tr>"""
console.log("row line:", row_line)
the_rows += row_line
@@ -111,12 +138,15 @@ $ ->
console.log("value:", value)
value = value.replace(" ", "_")
if processed.length
- processed += ":"
+ processed += "-"
processed += value
return processed
- $('#primary').change(edit_data_change)
+ _.mixin(_.str.exports()); # Add string fuctions directly to underscore
+ $('#value_table').change(edit_data_change)
console.log("loaded")
console.log("basic_table is:", basic_table)
make_table()
+ edit_data_change() # Set the values at the beginning
+ #$("#all-mean").html('foobar8')
console.log("end")
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
index e9a141a3..035b5c09 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
@@ -1,11 +1,11 @@
// Generated by CoffeeScript 1.3.3
(function() {
- var isNumber,
+ var is_number,
__slice = [].slice;
console.log("start_b");
- isNumber = function(o) {
+ is_number = function(o) {
return !isNaN((o - 0) && o !== null);
};
@@ -28,44 +28,81 @@
};
$(".stats_mdp").change(stats_mdp_change);
mean = function(the_values) {
- var current_mean, current_n_of_samples, n_of_samples, the_mean, total, value, _i, _len;
- total = 0;
- for (_i = 0, _len = the_values.length; _i < _len; _i++) {
- value = the_values[_i];
- total += value;
- }
- the_mean = total / the_values.length;
- the_mean = the_mean.toFixed(2);
- current_mean = parseFloat($("#mean_value").html).toFixed(2);
- if (the_mean !== current_mean) {
- $("#mean_value").html(the_mean).effect("highlight");
- }
- n_of_samples = the_values.length;
- current_n_of_samples = $("#n_of_samples_value").html();
- console.log("cnos:", current_n_of_samples);
- console.log("n_of_samples:", n_of_samples);
- if (n_of_samples !== current_n_of_samples) {
- return $("#n_of_samples_value").html(current_n_of_samples).effect("highlight");
+ var category, current_mean, current_n_of_samples, id, in_box, n_of_samples, the_mean, total, value, _i, _j, _len, _len1, _ref, _ref1, _results;
+ _ref = ['primary', 'other', 'all'];
+ _results = [];
+ for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+ category = _ref[_i];
+ id = "#" + process_id(category, "mean");
+ console.log("id:", id);
+ total = 0;
+ _ref1 = the_values[category];
+ for (_j = 0, _len1 = _ref1.length; _j < _len1; _j++) {
+ value = _ref1[_j];
+ total += value;
+ }
+ the_mean = total / the_values[category].length;
+ the_mean = the_mean.toFixed(2);
+ console.log("aaa");
+ in_box = $(id).html;
+ console.log("in_box:", in_box);
+ current_mean = parseFloat($(in_box)).toFixed(2);
+ console.log("the_mean:", the_mean);
+ console.log("current_mean:", current_mean);
+ console.log("aab");
+ if (the_mean !== current_mean) {
+ console.log("setting mean");
+ $(id).html(the_mean);
+ console.log("should be set");
+ }
+ if (current_mean && the_mean !== current_mean) {
+ $(id).effect("highlight");
+ }
+ n_of_samples = the_values[category].length;
+ current_n_of_samples = $("#n_of_samples_value").html();
+ console.log("cnos:", current_n_of_samples);
+ console.log("n_of_samples:", n_of_samples);
+ if (n_of_samples !== current_n_of_samples) {
+ _results.push($("#n_of_samples_value").html(current_n_of_samples).effect("highlight"));
+ } else {
+ _results.push(void 0);
+ }
}
+ return _results;
};
edit_data_change = function() {
- var checkbox, checked, real_value, row, the_values, value, values, _i, _len;
- the_values = [];
- values = $('#primary').find(".edit_strain_value");
+ var category, checkbox, checked, real_value, row, the_values, value, values, _i, _len;
+ the_values = {
+ primary: [],
+ other: [],
+ all: []
+ };
+ console.log("at beginning:", the_values);
+ values = $('#value_table').find(".edit_strain_value");
for (_i = 0, _len = values.length; _i < _len; _i++) {
value = values[_i];
real_value = $(value).val();
row = $(value).closest("tr");
+ console.log("row is:", row);
+ console.log("row[0].id is:", row[0].id);
+ category = row[0].id;
checkbox = $(row).find(".edit_strain_checkbox");
checked = $(checkbox).attr('checked');
if (!checked) {
console.log("Not checked");
continue;
}
- if (isNumber(real_value) && real_value !== "") {
- the_values.push(parseFloat(real_value));
+ if (is_number(real_value) && real_value !== "") {
+ real_value = parseFloat(real_value);
+ if (_(category).startsWith("Primary")) {
+ the_values.primary.push(real_value);
+ } else if (_(category).startsWith("Other")) {
+ the_values.other.push(real_value);
+ }
+ the_values.all.push(real_value);
}
}
+ console.log("torwads end:", the_values);
return mean(the_values);
};
make_table = function() {
@@ -108,7 +145,7 @@
console.log("apple:", column);
the_id = process_id(column.t, row.vn);
console.log("the_id:", the_id);
- row_line += "<td id=\"" + the_id + "\">&nbsp;</td>";
+ row_line += "<td id=\"" + the_id + "\">foo</td>";
}
row_line += "</tr>";
console.log("row line:", row_line);
@@ -131,16 +168,18 @@
console.log("value:", value);
value = value.replace(" ", "_");
if (processed.length) {
- processed += ":";
+ processed += "-";
}
processed += value;
}
return processed;
};
- $('#primary').change(edit_data_change);
+ _.mixin(_.str.exports());
+ $('#value_table').change(edit_data_change);
console.log("loaded");
console.log("basic_table is:", basic_table);
make_table();
+ edit_data_change();
return console.log("end");
});
diff --git a/wqflask/wqflask/static/new/js_external/underscore-min.js b/wqflask/wqflask/static/new/js_external/underscore-min.js
new file mode 100644
index 00000000..5a0cb3b0
--- /dev/null
+++ b/wqflask/wqflask/static/new/js_external/underscore-min.js
@@ -0,0 +1,32 @@
+// Underscore.js 1.3.3
+// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
+// Underscore is freely distributable under the MIT license.
+// Portions of Underscore are inspired or borrowed from Prototype,
+// Oliver Steele's Functional, and John Resig's Micro-Templating.
+// For all details and documentation:
+// http://documentcloud.github.com/underscore
+(function(){function r(a,c,d){if(a===c)return 0!==a||1/a==1/c;if(null==a||null==c)return a===c;a._chain&&(a=a._wrapped);c._chain&&(c=c._wrapped);if(a.isEqual&&b.isFunction(a.isEqual))return a.isEqual(c);if(c.isEqual&&b.isFunction(c.isEqual))return c.isEqual(a);var e=l.call(a);if(e!=l.call(c))return!1;switch(e){case "[object String]":return a==""+c;case "[object Number]":return a!=+a?c!=+c:0==a?1/a==1/c:a==+c;case "[object Date]":case "[object Boolean]":return+a==+c;case "[object RegExp]":return a.source==
+c.source&&a.global==c.global&&a.multiline==c.multiline&&a.ignoreCase==c.ignoreCase}if("object"!=typeof a||"object"!=typeof c)return!1;for(var f=d.length;f--;)if(d[f]==a)return!0;d.push(a);var f=0,g=!0;if("[object Array]"==e){if(f=a.length,g=f==c.length)for(;f--&&(g=f in a==f in c&&r(a[f],c[f],d)););}else{if("constructor"in a!="constructor"in c||a.constructor!=c.constructor)return!1;for(var h in a)if(b.has(a,h)&&(f++,!(g=b.has(c,h)&&r(a[h],c[h],d))))break;if(g){for(h in c)if(b.has(c,h)&&!f--)break;
+g=!f}}d.pop();return g}var s=this,I=s._,o={},k=Array.prototype,p=Object.prototype,i=k.slice,J=k.unshift,l=p.toString,K=p.hasOwnProperty,y=k.forEach,z=k.map,A=k.reduce,B=k.reduceRight,C=k.filter,D=k.every,E=k.some,q=k.indexOf,F=k.lastIndexOf,p=Array.isArray,L=Object.keys,t=Function.prototype.bind,b=function(a){return new m(a)};"undefined"!==typeof exports?("undefined"!==typeof module&&module.exports&&(exports=module.exports=b),exports._=b):s._=b;b.VERSION="1.3.3";var j=b.each=b.forEach=function(a,
+c,d){if(a!=null)if(y&&a.forEach===y)a.forEach(c,d);else if(a.length===+a.length)for(var e=0,f=a.length;e<f;e++){if(e in a&&c.call(d,a[e],e,a)===o)break}else for(e in a)if(b.has(a,e)&&c.call(d,a[e],e,a)===o)break};b.map=b.collect=function(a,c,b){var e=[];if(a==null)return e;if(z&&a.map===z)return a.map(c,b);j(a,function(a,g,h){e[e.length]=c.call(b,a,g,h)});if(a.length===+a.length)e.length=a.length;return e};b.reduce=b.foldl=b.inject=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(A&&
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