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-rwxr-xr-xwqflask/wqflask/templates/index_page_orig.html10
-rw-r--r--wqflask/wqflask/templates/show_trait_details.html12
2 files changed, 11 insertions, 11 deletions
diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html
index 6f21af56..7b2a2c0f 100755
--- a/wqflask/wqflask/templates/index_page_orig.html
+++ b/wqflask/wqflask/templates/index_page_orig.html
@@ -168,7 +168,7 @@
<li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF">
GeneRIF</a> links.</li>
- <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki">
+ <li><b>WIKI=nicotine</b> searches <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki">
GeneWiki</a> for genes that you or other users have annotated
with the word <i>nicotine</i>.</li>
@@ -177,7 +177,7 @@
Gene Ontology</a>.</li>
<li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b>
- finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E">
+ finds diabetes-associated transcripts with peak <a href="http://gn1.genenetwork.org/glossary.html#E">
trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS
scores between 9 and 999.</li>
</ul>
@@ -189,7 +189,7 @@
<div class="page-header">
<h1>Affiliates</h1>
<ul>
- <li><b><a href="http://genenetwork.org">GeneNetwork 1</a> at UTHSC</b></li>
+ <li><b><a href="http://gn1.genenetwork.org">GeneNetwork 1</a> at UTHSC</b></li>
<li><a href="http://ucscbrowser.genenetwork.org/">Genome Browser</a> at UTHSC</li>
<li><a href="https://systems-genetics.org/">Systems Genetics</a> at EPFL</li>
<li><a href="http://bnw.genenetwork.org/">Bayesian Network Web Server</a> at UTHSC</li>
@@ -259,7 +259,7 @@
</ul>
<h3>GeneNetwork v1:</h3>
<ul>
- <li><a href="http://www.genenetwork.org/">Main website</a> at UTHSC</li>
+ <li><a href="http://gn1.genenetwork.org/">Main website</a> at UTHSC</li>
<li><a href="http://artemis.uthsc.edu/">Time Machine</a>: Full GN versions from 2009 to 2016 (mm9)</li>
Cloud (EC2)</a></li>
</ul>
@@ -299,7 +299,7 @@
<h3>User Guide</h3>
<h5>Read the
- <a href="http://www.genenetwork.org/index4.html">
+ <a href="http://gn1.genenetwork.org/index4.html">
user guide</a>.</h5>
</section>-->
diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html
index b64b34d7..3584be22 100644
--- a/wqflask/wqflask/templates/show_trait_details.html
+++ b/wqflask/wqflask/templates/show_trait_details.html
@@ -53,7 +53,7 @@
<tr>
<td><b>Database</b></td>
<td>
- <a href="http://genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName={{ dataset.name }}" target="_blank">
+ <a href="http://gn1.genenetwork.org/webqtl/main.py?FormID=sharinginfo&InfoPageName={{ dataset.name }}" target="_blank">
{{ dataset.fullname }}
</a>
</td>
@@ -62,7 +62,7 @@
<tr>
<td><b>Target Score</b></td>
<td>
- <a href="http://genenetwork.org/blatInfo.html" target="_blank" title="Values higher than 2 for the specificity are good">
+ <a href="http://gn1.genenetwork.org/blatInfo.html" target="_blank" title="Values higher than 2 for the specificity are good">
BLAT Specificity
</a>:
{{ "%0.3f" | format(this_trait.probe_set_specificity|float) }}
@@ -208,7 +208,7 @@
</a>
{% if this_trait.dataset.type == 'ProbeSet' %}
{% if this_trait.symbol != None %}
- <a target="_blank" href="http://www.genenetwork.org/webqtl/main.py?cmd=sch&amp;gene={{ this_trait.symbol }}&amp;alias=1&amp;species={{ dataset.group.species }}">
+ <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?cmd=sch&amp;gene={{ this_trait.symbol }}&amp;alias=1&amp;species={{ dataset.group.species }}">
<button type="button" class="btn btn-default" title="Find similar expression data">Find</button>
</a>
{% endif %}
@@ -218,7 +218,7 @@
</a>
{% endif %}
{% if this_trait.symbol != None %}
- <a target="_blank" href="http://genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol={{ this_trait.symbol }}">
+ <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?FormID=geneWiki&symbol={{ this_trait.symbol }}">
<button type="button" class="btn btn-default" title="Write or review comments about this gene">GeneWiki</button>
</a>
{% if dataset.group.species == "mouse" or dataset.group.species == "rat" %}
@@ -228,12 +228,12 @@
{% endif %}
{% endif %}
{% if show_probes == "True" %}
- <a target="_blank" href="http://genenetwork.org/webqtl/main.py?FormID=showProbeInfo&database={{ this_trait.dataset.name }}&ProbeSetID={{ this_trait.name }}&CellID={{ this_trait.cellid }}&RISet={{ dataset.group.name }}&incparentsf1=ON">
+ <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?FormID=showProbeInfo&database={{ this_trait.dataset.name }}&ProbeSetID={{ this_trait.name }}&CellID={{ this_trait.cellid }}&RISet={{ dataset.group.name }}&incparentsf1=ON">
<button type="button" class="btn btn-default" title="Check sequence of probes">Probes</button>
</a>
{% endif %}
{% endif %}
- <a target="_blank" href="http://www.genenetwork.org/webqtl/main.py?cmd=show&db={{ this_trait.dataset.name }}&probeset={{ this_trait.name }}">
+ <a target="_blank" href="http://gn1.genenetwork.org/webqtl/main.py?cmd=show&db={{ this_trait.dataset.name }}&probeset={{ this_trait.name }}">
<button type="button" id="view_in_gn1" class="btn btn-primary" title="View Trait in GN1">View in GN1</button>
</a>
</div>