diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/external_tools/send_to_webgestalt.py | 126 | ||||
| -rw-r--r-- | wqflask/wqflask/gsearch.py | 40 | ||||
| -rw-r--r-- | wqflask/wqflask/search_results.py | 58 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/css/typeahead-bootstrap.css | 94 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/typeahead_rn6.json | 1 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/js_external/typeahead.bundle.js | 2451 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/collections/view.html | 6 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/gsearch_gene.html | 11 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/gsearch_pheno.html | 208 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/search_result_page.html | 352 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/snp_browser.html | 36 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/webgestalt_page.html | 35 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 20 |
13 files changed, 3139 insertions, 299 deletions
diff --git a/wqflask/wqflask/external_tools/send_to_webgestalt.py b/wqflask/wqflask/external_tools/send_to_webgestalt.py new file mode 100644 index 00000000..30ca024f --- /dev/null +++ b/wqflask/wqflask/external_tools/send_to_webgestalt.py @@ -0,0 +1,126 @@ +## Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Dr. Robert W. Williams at rwilliams@uthsc.edu +# +# +# This module is used by GeneNetwork project (www.genenetwork.org) + +from __future__ import absolute_import, print_function, division + +import string + +from flask import Flask, g + +from base.trait import GeneralTrait, retrieve_trait_info +from base.species import TheSpecies +from utility import helper_functions, corr_result_helpers + +import utility.logger +logger = utility.logger.getLogger(__name__ ) + +class SendToWebGestalt(object): + def __init__(self, start_vars): + trait_db_list = [trait.strip() for trait in start_vars['trait_list'].split(',')] + helper_functions.get_trait_db_obs(self, trait_db_list) + + self.chip_name = test_chip(self.trait_list) + + self.wrong_input = "False" + if self.chip_name == "mixed" or self.chip_name == "not_microarray" or '_NA' in self.chip_name: + self.wrong_input = "True" + else: + trait_name_list, gene_id_list = gen_gene_id_list(self.trait_list) + + self.target_url = "http://www.webgestalt.org/option.php" + + id_type = "entrezgene" + + self.hidden_vars = { + 'gene_list' : string.join(gene_id_list, "\n"), + 'id_type' : "entrezgene", + 'ref_set' : "genome", + 'enriched_database_category' : "geneontology", + 'enriched_database_name' : "Biological_Process", + 'sig_method' : "fdr", + 'sig_value' : "0.05", + 'enrich_method' : "ORA", + 'fdr_method' : "BH", + 'min_num' : "2" + } + + species = self.trait_list[0][1].group.species + if species == "rat": + self.hidden_vars['organism'] = "rnorvegicus" + elif species == "human": + self.hidden_vars['organism'] = "hsapiens" + elif species == "mouse": + self.hidden_vars['organism'] = "mmusculus" + else: + self.hidden_vars['organism'] = "others" + +def test_chip(trait_list): + final_chip_name = "" + + for trait_db in trait_list: + dataset = trait_db[1] + result = g.db.execute("""SELECT GeneChip.GO_tree_value + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name).fetchone() + + if result: + chip_name = result[0] + if chip_name: + if chip_name != final_chip_name: + if final_chip_name: + return "mixed" + else: + final_chip_name = chip_name + else: + pass + else: + result = g.db.execute("""SELECT GeneChip.Name + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name).fetchone() + chip_name = '%s_NA' % result[0] + return chip_name + else: + query = """SELECT GeneChip.Name + FROM GeneChip, ProbeFreeze, ProbeSetFreeze + WHERE GeneChip.Id = ProbeFreeze.ChipId and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeSetFreeze.Name = '%s'""" % dataset.name + result = g.db.execute(query).fetchone() + if result == None: + return "not_microarray" + else: + chip_name = '%s_NA' % result[0] + return chip_name + + return chip_name + +def gen_gene_id_list(trait_list): + trait_name_list = [] + gene_id_list = [] + for trait_db in trait_list: + trait = trait_db[0] + trait_name_list.append(trait.name) + retrieve_trait_info(trait, trait.dataset) + gene_id_list.append(str(trait.geneid)) + return trait_name_list, gene_id_list
\ No newline at end of file diff --git a/wqflask/wqflask/gsearch.py b/wqflask/wqflask/gsearch.py index 99dd087d..357f989d 100644 --- a/wqflask/wqflask/gsearch.py +++ b/wqflask/wqflask/gsearch.py @@ -67,7 +67,7 @@ class GSearch(object): this_trait['name'] = line[5] this_trait['dataset'] = line[3] this_trait['dataset_fullname'] = line[4] - this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[4], line[3])) + this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[5], line[3])) this_trait['species'] = line[0] this_trait['group'] = line[1] this_trait['tissue'] = line[2] @@ -76,13 +76,13 @@ class GSearch(object): this_trait['location_repr'] = 'N/A' if (line[8] != "NULL" and line[8] != "") and (line[9] != 0): this_trait['location_repr'] = 'Chr%s: %.6f' % (line[8], float(line[9])) - this_trait['mean'] = round(line[10], 3) + this_trait['mean'] = '%.3f' % line[10] this_trait['LRS_score_repr'] = "N/A" if line[11] != "" and line[11] != None: - this_trait['LRS_score_repr'] = round(line[10], 1) + this_trait['LRS_score_repr'] = '%3.1f' % line[10] this_trait['additive'] = "N/A" if line[14] != "" and line[14] != None: - this_trait['additive'] = round(line[14], 3) + this_trait['additive'] = '%.3f' % line[14] #dataset = create_dataset(line[3], "ProbeSet", get_samplelist=False) #trait_id = line[4] @@ -101,6 +101,7 @@ class GSearch(object): Species.`Name`, InbredSet.`Name`, PublishFreeze.`Name`, + PublishFreeze.`FullName`, PublishXRef.`Id`, Phenotype.`Pre_publication_description`, Phenotype.`Post_publication_description`, @@ -132,34 +133,43 @@ class GSearch(object): re = g.db.execute(sql).fetchall() self.trait_list = [] with Bench("Creating trait objects"): - for line in re: + for i, line in enumerate(re): this_trait = {} - this_trait['name'] = line[3] + this_trait['index'] = i + 1 + this_trait['name'] = str(line[4]) this_trait['dataset'] = line[2] + this_trait['dataset_fullname'] = line[3] + this_trait['hmac'] = user_manager.data_hmac('{}:{}'.format(line[5], line[3])) this_trait['species'] = line[0] this_trait['group'] = line[1] if line[8] != None: - this_trait['description'] = line[5] + this_trait['description'] = line[6] else: - this_trait['description'] = line[4] - this_trait['authors'] = line[6] - this_trait['year'] = line[7] + this_trait['description'] = line[5] + this_trait['authors'] = line[7] + this_trait['year'] = line[8] if this_trait['year'].isdigit(): this_trait['pubmed_text'] = this_trait['year'] else: this_trait['pubmed_text'] = "N/A" - if line[8] != "" and line[8] != None: + if line[9] != "" and line[9] != None: this_trait['pubmed_link'] = webqtlConfig.PUBMEDLINK_URL % line[8] else: this_trait['pubmed_link'] = "N/A" this_trait['LRS_score_repr'] = "N/A" - if line[9] != "" and line[9] != None: - this_trait['LRS_score_repr'] = '%3.1f' % line[9] + if line[10] != "" and line[10] != None: + this_trait['LRS_score_repr'] = '%3.1f' % line[10] this_trait['additive'] = "N/A" - if line[10] != "": - this_trait['additive'] = line[10] + if line[11] != "" and line[11] != None: + this_trait['additive'] = '%.3f' % line[11] #dataset = create_dataset(line[2], "Publish") #trait_id = line[3] #this_trait = GeneralTrait(dataset=dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) + this_trait['max_lrs_text'] = "N/A" + if this_trait['dataset'] == this_trait['group'] + "Publish": + trait_ob = GeneralTrait(dataset_name=this_trait['dataset'], name=this_trait['name'], get_qtl_info=True, get_sample_info=False) + if trait_ob.locus_chr != "" and trait_ob.locus_mb != "": + this_trait['max_lrs_text'] = "Chr" + str(trait_ob.locus_chr) + ": " + str(trait_ob.locus_mb) + self.trait_list.append(this_trait) diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index 171fd0f9..c67063b0 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -23,6 +23,8 @@ from wqflask import do_search from utility import webqtlUtil,tools from db import webqtlDatabaseFunction +from wqflask import user_manager + from flask import render_template from utility import formatting @@ -87,37 +89,63 @@ views.py). the "search" function """ - self.trait_list = [] + trait_list = [] json_trait_list = [] species = webqtlDatabaseFunction.retrieve_species(self.dataset.group.name) # result_set represents the results for each search term; a search of # "shh grin2b" would have two sets of results, one for each term logger.debug("self.results is:", pf(self.results)) + for index, result in enumerate(self.results): if not result: continue #### Excel file needs to be generated #### - #logger.debug("foo locals are:", locals()) + trait_dict = {} trait_id = result[0] + trait_dict['index'] = index + 1 this_trait = trait.GeneralTrait(dataset=self.dataset, name=trait_id, get_qtl_info=True, get_sample_info=False) - self.trait_list.append(this_trait) - json_trait_list.append(trait.jsonable_table_row(this_trait, self.dataset.name, index + 1)) - - self.json_trait_list = json.dumps(json_trait_list) - - #def get_group_species_tree(self): - # self.species_groups = collections.default_dict(list) - # for key in self.results: - # for item in self.results[key]: - # self.species_groups[item['result_fields']['species']].append( - # item['result_fields']['group_name']) + trait_dict['name'] = this_trait.name + trait_dict['dataset'] = this_trait.dataset.name + trait_dict['hmac'] = user_manager.data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset.name)) + if this_trait.dataset.type == "ProbeSet": + trait_dict['symbol'] = this_trait.symbol + trait_dict['description'] = this_trait.description_display + trait_dict['location'] = this_trait.location_repr + trait_dict['mean'] = "N/A" + trait_dict['additive'] = "N/A" + if this_trait.mean != "": + trait_dict['mean'] = '%.3f' % this_trait.mean + trait_dict['lrs_score'] = this_trait.LRS_score_repr + trait_dict['lrs_location'] = this_trait.LRS_location_repr + if this_trait.additive != "": + trait_dict['additive'] = '%.3f' % this_trait.additive + elif this_trait.dataset.type == "Geno": + trait_dict['location'] = this_trait.location_repr + elif this_trait.dataset.type == "Publish": + trait_dict['description'] = this_trait.description_display + trait_dict['authors'] = this_trait.authors + trait_dict['pubmed_id'] = "N/A" + if this_trait.pubmed_id: + trait_dict['pubmed_id'] = this_trait.pubmed_id + trait_dict['pubmed_link'] = this_trait.pubmed_link + trait_dict['pubmed_text'] = this_trait.pubmed_text + trait_dict['lrs_score'] = this_trait.LRS_score_repr + trait_dict['lrs_location'] = this_trait.LRS_location_repr + trait_dict['additive'] = "N/A" + if this_trait.additive != "": + trait_dict['additive'] = '%.3f' % this_trait.additive + trait_list.append(trait_dict) + #json_trait_list.append(trait.jsonable_table_row(this_trait, self.dataset.name, index + 1)) + + self.trait_list = json.dumps(trait_list) + #self.json_trait_list = json.dumps(json_trait_list) def search(self): - """This function sets up the actual search query in the form of a SQL -statement and executes + """ + This function sets up the actual search query in the form of a SQL statement and executes """ self.search_terms = parser.parse(self.search_terms) diff --git a/wqflask/wqflask/static/new/css/typeahead-bootstrap.css b/wqflask/wqflask/static/new/css/typeahead-bootstrap.css new file mode 100644 index 00000000..87dd4b5d --- /dev/null +++ b/wqflask/wqflask/static/new/css/typeahead-bootstrap.css @@ -0,0 +1,94 @@ +span.twitter-typeahead .tt-menu, +span.twitter-typeahead .tt-dropdown-menu { + cursor: pointer; + position: absolute; + top: 100%; + left: 0; + z-index: 1000; + display: none; + float: left; + min-width: 160px; + padding: 5px 0; + margin: 2px 0 0; + list-style: none; + font-size: 14px; + text-align: left; + background-color: #ffffff; + border: 1px solid #cccccc; + border: 1px solid rgba(0, 0, 0, 0.15); + border-radius: 4px; + -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175); + box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175); + background-clip: padding-box; +} +span.twitter-typeahead .tt-suggestion { + display: block; + padding: 3px 20px; + clear: both; + font-weight: normal; + line-height: 1.42857143; + color: #333333; + white-space: nowrap; +} +span.twitter-typeahead .tt-suggestion.tt-cursor, +span.twitter-typeahead .tt-suggestion:hover, +span.twitter-typeahead .tt-suggestion:focus { + color: #ffffff; + text-decoration: none; + outline: 0; + background-color: #337ab7; +} +.input-group.input-group-lg span.twitter-typeahead .form-control { + height: 46px; + padding: 10px 16px; + font-size: 18px; + line-height: 1.3333333; + border-radius: 6px; +} +.input-group.input-group-sm span.twitter-typeahead .form-control { + height: 30px; + padding: 5px 10px; + font-size: 12px; + line-height: 1.5; + border-radius: 3px; +} +span.twitter-typeahead { + width: 100%; +} +.input-group span.twitter-typeahead { + display: block !important; + height: 34px; +} +.input-group span.twitter-typeahead .tt-menu, +.input-group span.twitter-typeahead .tt-dropdown-menu { + top: 32px !important; +} +.input-group span.twitter-typeahead:not(:first-child):not(:last-child) .form-control { + border-radius: 0; +} +.input-group span.twitter-typeahead:first-child .form-control { + border-top-left-radius: 4px; + border-bottom-left-radius: 4px; + border-top-right-radius: 0; + border-bottom-right-radius: 0; +} +.input-group span.twitter-typeahead:last-child .form-control { + border-top-left-radius: 0; + border-bottom-left-radius: 0; + border-top-right-radius: 4px; + border-bottom-right-radius: 4px; +} +.input-group.input-group-sm span.twitter-typeahead { + height: 30px; +} +.input-group.input-group-sm span.twitter-typeahead .tt-menu, +.input-group.input-group-sm span.twitter-typeahead .tt-dropdown-menu { + top: 30px !important; +} +.input-group.input-group-lg span.twitter-typeahead { + height: 46px; +} +.input-group.input-group-lg span.twitter-typeahead .tt-menu, +.input-group.input-group-lg span.twitter-typeahead .tt-dropdown-menu { + top: 46px !important; +}
\ No newline at end of file diff --git a/wqflask/wqflask/static/new/javascript/typeahead_rn6.json b/wqflask/wqflask/static/new/javascript/typeahead_rn6.json new file mode 100644 index 00000000..1889d8a2 --- /dev/null +++ b/wqflask/wqflask/static/new/javascript/typeahead_rn6.json @@ -0,0 +1 @@ +var rat_genes = 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val : JSON.stringify(val); + }, + noop: function() {} + }; + }(); + var VERSION = "0.11.1"; + var tokenizers = function() { + "use strict"; + return { + nonword: nonword, + whitespace: whitespace, + obj: { + nonword: getObjTokenizer(nonword), + whitespace: getObjTokenizer(whitespace) + } + }; + function whitespace(str) { + str = _.toStr(str); + return str ? str.split(/\s+/) : []; + } + function nonword(str) { + str = _.toStr(str); + return str ? str.split(/\W+/) : []; + } + function getObjTokenizer(tokenizer) { + return function setKey(keys) { + keys = _.isArray(keys) ? keys : [].slice.call(arguments, 0); + return function tokenize(o) { + var tokens = []; + _.each(keys, function(k) { + tokens = tokens.concat(tokenizer(_.toStr(o[k]))); + }); + return tokens; + }; + }; + } + }(); + var LruCache = function() { + "use strict"; + function LruCache(maxSize) { + this.maxSize = _.isNumber(maxSize) ? maxSize : 100; + this.reset(); + if (this.maxSize <= 0) { + this.set = this.get = $.noop; + } + } + _.mixin(LruCache.prototype, { + set: function set(key, val) { + var tailItem = this.list.tail, node; + if (this.size >= this.maxSize) { + this.list.remove(tailItem); + delete this.hash[tailItem.key]; + this.size--; + } + if (node = this.hash[key]) { + node.val = val; + this.list.moveToFront(node); + } else { + node = new Node(key, val); + this.list.add(node); + this.hash[key] = node; + this.size++; + } + }, + get: function get(key) { + var node = this.hash[key]; + if (node) { + this.list.moveToFront(node); + return node.val; + } + }, + reset: function reset() { + this.size = 0; + this.hash = {}; + this.list = new List(); + } + }); + function List() { + this.head = this.tail = null; + } + _.mixin(List.prototype, { + add: function add(node) { + if (this.head) { + node.next = this.head; + this.head.prev = node; + } + this.head = node; + this.tail = this.tail || node; + }, + remove: function remove(node) { + node.prev ? node.prev.next = node.next : this.head = node.next; + node.next ? node.next.prev = node.prev : this.tail = node.prev; + }, + moveToFront: function(node) { + this.remove(node); + this.add(node); + } + }); + function Node(key, val) { + this.key = key; + this.val = val; + this.prev = this.next = null; + } + return LruCache; + }(); + var PersistentStorage = function() { + "use strict"; + var LOCAL_STORAGE; + try { + LOCAL_STORAGE = window.localStorage; + LOCAL_STORAGE.setItem("~~~", "!"); + LOCAL_STORAGE.removeItem("~~~"); + } catch (err) { + LOCAL_STORAGE = null; + } + function PersistentStorage(namespace, override) { + this.prefix = [ "__", namespace, "__" ].join(""); + this.ttlKey = "__ttl__"; + this.keyMatcher = new RegExp("^" + _.escapeRegExChars(this.prefix)); + this.ls = override || LOCAL_STORAGE; + !this.ls && this._noop(); + } + _.mixin(PersistentStorage.prototype, { + _prefix: function(key) { + return this.prefix + key; + }, + _ttlKey: function(key) { + return this._prefix(key) + this.ttlKey; + }, + _noop: function() { + this.get = this.set = this.remove = this.clear = this.isExpired = _.noop; + }, + _safeSet: function(key, val) { + try { + this.ls.setItem(key, val); + } catch (err) { + if (err.name === "QuotaExceededError") { + this.clear(); + this._noop(); + } + } + }, + get: function(key) { + if (this.isExpired(key)) { + this.remove(key); + } + return decode(this.ls.getItem(this._prefix(key))); + }, + set: function(key, val, ttl) { + if (_.isNumber(ttl)) { + this._safeSet(this._ttlKey(key), encode(now() + ttl)); + } else { + this.ls.removeItem(this._ttlKey(key)); + } + return this._safeSet(this._prefix(key), encode(val)); + }, + remove: function(key) { + this.ls.removeItem(this._ttlKey(key)); + this.ls.removeItem(this._prefix(key)); + return this; + }, + clear: function() { + var i, keys = gatherMatchingKeys(this.keyMatcher); + for (i = keys.length; i--; ) { + this.remove(keys[i]); + } + return this; + }, + isExpired: function(key) { + var ttl = decode(this.ls.getItem(this._ttlKey(key))); + return _.isNumber(ttl) && now() > ttl ? true : false; + } + }); + return PersistentStorage; + function now() { + return new Date().getTime(); + } + function encode(val) { + return JSON.stringify(_.isUndefined(val) ? null : val); + } + function decode(val) { + return $.parseJSON(val); + } + function gatherMatchingKeys(keyMatcher) { + var i, key, keys = [], len = LOCAL_STORAGE.length; + for (i = 0; i < len; i++) { + if ((key = LOCAL_STORAGE.key(i)).match(keyMatcher)) { + keys.push(key.replace(keyMatcher, "")); + } + } + return keys; + } + }(); + var Transport = function() { + "use strict"; + var pendingRequestsCount = 0, pendingRequests = {}, maxPendingRequests = 6, sharedCache = new LruCache(10); + function Transport(o) { + o = o || {}; + this.cancelled = false; + this.lastReq = null; + this._send = o.transport; + this._get = o.limiter ? o.limiter(this._get) : this._get; + this._cache = o.cache === false ? new LruCache(0) : sharedCache; + } + Transport.setMaxPendingRequests = function setMaxPendingRequests(num) { + maxPendingRequests = num; + }; + Transport.resetCache = function resetCache() { + sharedCache.reset(); + }; + _.mixin(Transport.prototype, { + _fingerprint: function fingerprint(o) { + o = o || {}; + return o.url + o.type + $.param(o.data || {}); + }, + _get: function(o, cb) { + var that = this, fingerprint, jqXhr; + fingerprint = this._fingerprint(o); + if (this.cancelled || fingerprint !== this.lastReq) { + return; + } + if (jqXhr = pendingRequests[fingerprint]) { + jqXhr.done(done).fail(fail); + } else if (pendingRequestsCount < maxPendingRequests) { + pendingRequestsCount++; + pendingRequests[fingerprint] = this._send(o).done(done).fail(fail).always(always); + } else { + this.onDeckRequestArgs = [].slice.call(arguments, 0); + } + function done(resp) { + cb(null, resp); + that._cache.set(fingerprint, resp); + } + function fail() { + cb(true); + } + function always() { + pendingRequestsCount--; + delete pendingRequests[fingerprint]; + if (that.onDeckRequestArgs) { + that._get.apply(that, that.onDeckRequestArgs); + that.onDeckRequestArgs = null; + } + } + }, + get: function(o, cb) { + var resp, fingerprint; + cb = cb || $.noop; + o = _.isString(o) ? { + url: o + } : o || {}; + fingerprint = this._fingerprint(o); + this.cancelled = false; + this.lastReq = fingerprint; + if (resp = this._cache.get(fingerprint)) { + cb(null, resp); + } else { + this._get(o, cb); + } + }, + cancel: function() { + this.cancelled = true; + } + }); + return Transport; + }(); + var SearchIndex = window.SearchIndex = function() { + "use strict"; + var CHILDREN = "c", IDS = "i"; + function SearchIndex(o) { + o = o || {}; + if (!o.datumTokenizer || !o.queryTokenizer) { + $.error("datumTokenizer and queryTokenizer are both required"); + } + this.identify = o.identify || _.stringify; + this.datumTokenizer = o.datumTokenizer; + this.queryTokenizer = o.queryTokenizer; + this.reset(); + } + _.mixin(SearchIndex.prototype, { + bootstrap: function bootstrap(o) { + this.datums = o.datums; + this.trie = o.trie; + }, + add: function(data) { + var that = this; + data = _.isArray(data) ? data : [ data ]; + _.each(data, function(datum) { + var id, tokens; + that.datums[id = that.identify(datum)] = datum; + tokens = normalizeTokens(that.datumTokenizer(datum)); + _.each(tokens, function(token) { + var node, chars, ch; + node = that.trie; + chars = token.split(""); + while (ch = chars.shift()) { + node = node[CHILDREN][ch] || (node[CHILDREN][ch] = newNode()); + node[IDS].push(id); + } + }); + }); + }, + get: function get(ids) { + var that = this; + return _.map(ids, function(id) { + return that.datums[id]; + }); + }, + search: function search(query) { + var that = this, tokens, matches; + tokens = normalizeTokens(this.queryTokenizer(query)); + _.each(tokens, function(token) { + var node, chars, ch, ids; + if (matches && matches.length === 0) { + return false; + } + node = that.trie; + chars = token.split(""); + while (node && (ch = chars.shift())) { + node = node[CHILDREN][ch]; + } + if (node && chars.length === 0) { + ids = node[IDS].slice(0); + matches = matches ? getIntersection(matches, ids) : ids; + } else { + matches = []; + return false; + } + }); + return matches ? _.map(unique(matches), function(id) { + return that.datums[id]; + }) : []; + }, + all: function all() { + var values = []; + for (var key in this.datums) { + values.push(this.datums[key]); + } + return values; + }, + reset: function reset() { + this.datums = {}; + this.trie = newNode(); + }, + serialize: function serialize() { + return { + datums: this.datums, + trie: this.trie + }; + } + }); + return SearchIndex; + function normalizeTokens(tokens) { + tokens = _.filter(tokens, function(token) { + return !!token; + }); + tokens = _.map(tokens, function(token) { + return token.toLowerCase(); + }); + return tokens; + } + function newNode() { + var node = {}; + node[IDS] = []; + node[CHILDREN] = {}; + return node; + } + function unique(array) { + var seen = {}, uniques = []; + for (var i = 0, len = array.length; i < len; i++) { + if (!seen[array[i]]) { + seen[array[i]] = true; + uniques.push(array[i]); + } + } + return uniques; + } + function getIntersection(arrayA, arrayB) { + var ai = 0, bi = 0, intersection = []; + arrayA = arrayA.sort(); + arrayB = arrayB.sort(); + var lenArrayA = arrayA.length, lenArrayB = arrayB.length; + while (ai < lenArrayA && bi < lenArrayB) { + if (arrayA[ai] < arrayB[bi]) { + ai++; + } else if (arrayA[ai] > arrayB[bi]) { + bi++; + } else { + intersection.push(arrayA[ai]); + ai++; + bi++; + } + } + return intersection; + } + }(); + var Prefetch = function() { + "use strict"; + var keys; + keys = { + data: "data", + protocol: "protocol", + thumbprint: "thumbprint" + }; + function Prefetch(o) { + this.url = o.url; + this.ttl = o.ttl; + this.cache = o.cache; + this.prepare = o.prepare; + this.transform = o.transform; + this.transport = o.transport; + this.thumbprint = o.thumbprint; + this.storage = new PersistentStorage(o.cacheKey); + } + _.mixin(Prefetch.prototype, { + _settings: function settings() { + return { + url: this.url, + type: "GET", + dataType: "json" + }; + }, + store: function store(data) { + if (!this.cache) { + return; + } + this.storage.set(keys.data, data, this.ttl); + this.storage.set(keys.protocol, location.protocol, this.ttl); + this.storage.set(keys.thumbprint, this.thumbprint, this.ttl); + }, + fromCache: function fromCache() { + var stored = {}, isExpired; + if (!this.cache) { + return null; + } + stored.data = this.storage.get(keys.data); + stored.protocol = this.storage.get(keys.protocol); + stored.thumbprint = this.storage.get(keys.thumbprint); + isExpired = stored.thumbprint !== this.thumbprint || stored.protocol !== location.protocol; + return stored.data && !isExpired ? stored.data : null; + }, + fromNetwork: function(cb) { + var that = this, settings; + if (!cb) { + return; + } + settings = this.prepare(this._settings()); + this.transport(settings).fail(onError).done(onResponse); + function onError() { + cb(true); + } + function onResponse(resp) { + cb(null, that.transform(resp)); + } + }, + clear: function clear() { + this.storage.clear(); + return this; + } + }); + return Prefetch; + }(); + var Remote = function() { + "use strict"; + function Remote(o) { + this.url = o.url; + this.prepare = o.prepare; + this.transform = o.transform; + this.transport = new Transport({ + cache: o.cache, + limiter: o.limiter, + transport: o.transport + }); + } + _.mixin(Remote.prototype, { + _settings: function settings() { + return { + url: this.url, + type: "GET", + dataType: "json" + }; + }, + get: function get(query, cb) { + var that = this, settings; + if (!cb) { + return; + } + query = query || ""; + settings = this.prepare(query, this._settings()); + return this.transport.get(settings, onResponse); + function onResponse(err, resp) { + err ? cb([]) : cb(that.transform(resp)); + } + }, + cancelLastRequest: function cancelLastRequest() { + this.transport.cancel(); + } + }); + return Remote; + }(); + var oParser = function() { + "use strict"; + return function parse(o) { + var defaults, sorter; + defaults = { + initialize: true, + identify: _.stringify, + datumTokenizer: null, + queryTokenizer: null, + sufficient: 5, + sorter: null, + local: [], + prefetch: null, + remote: null + }; + o = _.mixin(defaults, o || {}); + !o.datumTokenizer && $.error("datumTokenizer is required"); + !o.queryTokenizer && $.error("queryTokenizer is required"); + sorter = o.sorter; + o.sorter = sorter ? function(x) { + return x.sort(sorter); + } : _.identity; + o.local = _.isFunction(o.local) ? o.local() : o.local; + o.prefetch = parsePrefetch(o.prefetch); + o.remote = parseRemote(o.remote); + return o; + }; + function parsePrefetch(o) { + var defaults; + if (!o) { + return null; + } + defaults = { + url: null, + ttl: 24 * 60 * 60 * 1e3, + cache: true, + cacheKey: null, + thumbprint: "", + prepare: _.identity, + transform: _.identity, + transport: null + }; + o = _.isString(o) ? { + url: o + } : o; + o = _.mixin(defaults, o); + !o.url && $.error("prefetch requires url to be set"); + o.transform = o.filter || o.transform; + o.cacheKey = o.cacheKey || o.url; + o.thumbprint = VERSION + o.thumbprint; + o.transport = o.transport ? callbackToDeferred(o.transport) : $.ajax; + return o; + } + function parseRemote(o) { + var defaults; + if (!o) { + return; + } + defaults = { + url: null, + cache: true, + prepare: null, + replace: null, + wildcard: null, + limiter: null, + rateLimitBy: "debounce", + rateLimitWait: 300, + transform: _.identity, + transport: null + }; + o = _.isString(o) ? { + url: o + } : o; + o = _.mixin(defaults, o); + !o.url && $.error("remote requires url to be set"); + o.transform = o.filter || o.transform; + o.prepare = toRemotePrepare(o); + o.limiter = toLimiter(o); + o.transport = o.transport ? callbackToDeferred(o.transport) : $.ajax; + delete o.replace; + delete o.wildcard; + delete o.rateLimitBy; + delete o.rateLimitWait; + return o; + } + function toRemotePrepare(o) { + var prepare, replace, wildcard; + prepare = o.prepare; + replace = o.replace; + wildcard = o.wildcard; + if (prepare) { + return prepare; + } + if (replace) { + prepare = prepareByReplace; + } else if (o.wildcard) { + prepare = prepareByWildcard; + } else { + prepare = idenityPrepare; + } + return prepare; + function prepareByReplace(query, settings) { + settings.url = replace(settings.url, query); + return settings; + } + function prepareByWildcard(query, settings) { + settings.url = settings.url.replace(wildcard, encodeURIComponent(query)); + return settings; + } + function idenityPrepare(query, settings) { + return settings; + } + } + function toLimiter(o) { + var limiter, method, wait; + limiter = o.limiter; + method = o.rateLimitBy; + wait = o.rateLimitWait; + if (!limiter) { + limiter = /^throttle$/i.test(method) ? throttle(wait) : debounce(wait); + } + return limiter; + function debounce(wait) { + return function debounce(fn) { + return _.debounce(fn, wait); + }; + } + function throttle(wait) { + return function throttle(fn) { + return _.throttle(fn, wait); + }; + } + } + function callbackToDeferred(fn) { + return function wrapper(o) { + var deferred = $.Deferred(); + fn(o, onSuccess, onError); + return deferred; + function onSuccess(resp) { + _.defer(function() { + deferred.resolve(resp); + }); + } + function onError(err) { + _.defer(function() { + deferred.reject(err); + }); + } + }; + } + }(); + var Bloodhound = function() { + "use strict"; + var old; + old = window && window.Bloodhound; + function Bloodhound(o) { + o = oParser(o); + this.sorter = o.sorter; + this.identify = o.identify; + this.sufficient = o.sufficient; + this.local = o.local; + this.remote = o.remote ? new Remote(o.remote) : null; + this.prefetch = o.prefetch ? new Prefetch(o.prefetch) : null; + this.index = new SearchIndex({ + identify: this.identify, + datumTokenizer: o.datumTokenizer, + queryTokenizer: o.queryTokenizer + }); + o.initialize !== false && this.initialize(); + } + Bloodhound.noConflict = function noConflict() { + window && (window.Bloodhound = old); + return Bloodhound; + }; + Bloodhound.tokenizers = tokenizers; + _.mixin(Bloodhound.prototype, { + __ttAdapter: function ttAdapter() { + var that = this; + return this.remote ? withAsync : withoutAsync; + function withAsync(query, sync, async) { + return that.search(query, sync, async); + } + function withoutAsync(query, sync) { + return that.search(query, sync); + } + }, + _loadPrefetch: function loadPrefetch() { + var that = this, deferred, serialized; + deferred = $.Deferred(); + if (!this.prefetch) { + deferred.resolve(); + } else if (serialized = this.prefetch.fromCache()) { + this.index.bootstrap(serialized); + deferred.resolve(); + } else { + this.prefetch.fromNetwork(done); + } + return deferred.promise(); + function done(err, data) { + if (err) { + return deferred.reject(); + } + that.add(data); + that.prefetch.store(that.index.serialize()); + deferred.resolve(); + } + }, + _initialize: function initialize() { + var that = this, deferred; + this.clear(); + (this.initPromise = this._loadPrefetch()).done(addLocalToIndex); + return this.initPromise; + function addLocalToIndex() { + that.add(that.local); + } + }, + initialize: function initialize(force) { + return !this.initPromise || force ? this._initialize() : this.initPromise; + }, + add: function add(data) { + this.index.add(data); + return this; + }, + get: function get(ids) { + ids = _.isArray(ids) ? ids : [].slice.call(arguments); + return this.index.get(ids); + }, + search: function search(query, sync, async) { + var that = this, local; + local = this.sorter(this.index.search(query)); + sync(this.remote ? local.slice() : local); + if (this.remote && local.length < this.sufficient) { + this.remote.get(query, processRemote); + } else if (this.remote) { + this.remote.cancelLastRequest(); + } + return this; + function processRemote(remote) { + var nonDuplicates = []; + _.each(remote, function(r) { + !_.some(local, function(l) { + return that.identify(r) === that.identify(l); + }) && nonDuplicates.push(r); + }); + async && async(nonDuplicates); + } + }, + all: function all() { + return this.index.all(); + }, + clear: function clear() { + this.index.reset(); + return this; + }, + clearPrefetchCache: function clearPrefetchCache() { + this.prefetch && this.prefetch.clear(); + return this; + }, + clearRemoteCache: function clearRemoteCache() { + Transport.resetCache(); + return this; + }, + ttAdapter: function ttAdapter() { + return this.__ttAdapter(); + } + }); + return Bloodhound; + }(); + return Bloodhound; +}); + +(function(root, factory) { + if (typeof define === "function" && define.amd) { + define("typeahead.js", [ "jquery" ], function(a0) { + return factory(a0); + }); + } else if (typeof exports === "object") { + module.exports = factory(require("jquery")); + } else { + factory(jQuery); + } +})(this, function($) { + var _ = function() { + "use strict"; + return { + isMsie: function() { + return /(msie|trident)/i.test(navigator.userAgent) ? navigator.userAgent.match(/(msie |rv:)(\d+(.\d+)?)/i)[2] : false; + }, + isBlankString: function(str) { + return !str || /^\s*$/.test(str); + }, + escapeRegExChars: function(str) { + return str.replace(/[\-\[\]\/\{\}\(\)\*\+\?\.\\\^\$\|]/g, "\\$&"); + }, + isString: function(obj) { + return typeof obj === "string"; + }, + isNumber: function(obj) { + return typeof obj === "number"; + }, + isArray: $.isArray, + isFunction: $.isFunction, + isObject: $.isPlainObject, + isUndefined: function(obj) { + return typeof obj === "undefined"; + }, + isElement: function(obj) { + return !!(obj && obj.nodeType === 1); + }, + isJQuery: function(obj) { + return obj instanceof $; + }, + toStr: function toStr(s) { + return _.isUndefined(s) || s === null ? "" : s + ""; + }, + bind: $.proxy, + each: function(collection, cb) { + $.each(collection, reverseArgs); + function reverseArgs(index, value) { + return cb(value, index); + } + }, + map: $.map, + filter: $.grep, + every: function(obj, test) { + var result = true; + if (!obj) { + return result; + } + $.each(obj, function(key, val) { + if (!(result = test.call(null, val, key, obj))) { + return false; + } + }); + return !!result; + }, + some: function(obj, test) { + var result = false; + if (!obj) { + return result; + } + $.each(obj, function(key, val) { + if (result = test.call(null, val, key, obj)) { + return false; + } + }); + return !!result; + }, + mixin: $.extend, + identity: function(x) { + return x; + }, + clone: function(obj) { + return $.extend(true, {}, obj); + }, + getIdGenerator: function() { + var counter = 0; + return function() { + return counter++; + }; + }, + templatify: function templatify(obj) { + return $.isFunction(obj) ? obj : template; + function template() { + return String(obj); + } + }, + defer: function(fn) { + setTimeout(fn, 0); + }, + debounce: function(func, wait, immediate) { + var timeout, result; + return function() { + var context = this, args = arguments, later, callNow; + later = function() { + timeout = null; + if (!immediate) { + result = func.apply(context, args); + } + }; + callNow = immediate && !timeout; + clearTimeout(timeout); + timeout = setTimeout(later, wait); + if (callNow) { + result = func.apply(context, args); + } + return result; + }; + }, + throttle: function(func, wait) { + var context, args, timeout, result, previous, later; + previous = 0; + later = function() { + previous = new Date(); + timeout = null; + result = func.apply(context, args); + }; + return function() { + var now = new Date(), remaining = wait - (now - previous); + context = this; + args = arguments; + if (remaining <= 0) { + clearTimeout(timeout); + timeout = null; + previous = now; + result = func.apply(context, args); + } else if (!timeout) { + timeout = setTimeout(later, remaining); + } + return result; + }; + }, + stringify: function(val) { + return _.isString(val) ? val : JSON.stringify(val); + }, + noop: function() {} + }; + }(); + var WWW = function() { + "use strict"; + var defaultClassNames = { + wrapper: "twitter-typeahead", + input: "tt-input", + hint: "tt-hint", + menu: "tt-menu", + dataset: "tt-dataset", + suggestion: "tt-suggestion", + selectable: "tt-selectable", + empty: "tt-empty", + open: "tt-open", + cursor: "tt-cursor", + highlight: "tt-highlight" + }; + return build; + function build(o) { + var www, classes; + classes = _.mixin({}, defaultClassNames, o); + www = { + css: buildCss(), + classes: classes, + html: buildHtml(classes), + selectors: buildSelectors(classes) + }; + return { + css: www.css, + html: www.html, + classes: www.classes, + selectors: www.selectors, + mixin: function(o) { + _.mixin(o, www); + } + }; + } + function buildHtml(c) { + return { + wrapper: '<span class="' + c.wrapper + '"></span>', + menu: '<div class="' + c.menu + '"></div>' + }; + } + function buildSelectors(classes) { + var selectors = {}; + _.each(classes, function(v, k) { + selectors[k] = "." + v; + }); + return selectors; + } + function buildCss() { + var css = { + wrapper: { + position: "relative", + display: "inline-block" + }, + hint: { + position: "absolute", + top: "0", + left: "0", + borderColor: "transparent", + boxShadow: "none", + opacity: "1" + }, + input: { + position: "relative", + verticalAlign: "top", + backgroundColor: "transparent" + }, + inputWithNoHint: { + position: "relative", + verticalAlign: "top" + }, + menu: { + position: "absolute", + top: "100%", + left: "0", + zIndex: "100", + display: "none" + }, + ltr: { + left: "0", + right: "auto" + }, + rtl: { + left: "auto", + right: " 0" + } + }; + if (_.isMsie()) { + _.mixin(css.input, { + backgroundImage: "url(data:image/gif;base64,R0lGODlhAQABAIAAAAAAAP///yH5BAEAAAAALAAAAAABAAEAAAIBRAA7)" + }); + } + return css; + } + }(); + var EventBus = function() { + "use strict"; + var namespace, deprecationMap; + namespace = "typeahead:"; + deprecationMap = { + render: "rendered", + cursorchange: "cursorchanged", + select: "selected", + autocomplete: "autocompleted" + }; + function EventBus(o) { + if (!o || !o.el) { + $.error("EventBus initialized without el"); + } + this.$el = $(o.el); + } + _.mixin(EventBus.prototype, { + _trigger: function(type, args) { + var $e; + $e = $.Event(namespace + type); + (args = args || []).unshift($e); + this.$el.trigger.apply(this.$el, args); + return $e; + }, + before: function(type) { + var args, $e; + args = [].slice.call(arguments, 1); + $e = this._trigger("before" + type, args); + return $e.isDefaultPrevented(); + }, + trigger: function(type) { + var deprecatedType; + this._trigger(type, [].slice.call(arguments, 1)); + if (deprecatedType = deprecationMap[type]) { + this._trigger(deprecatedType, [].slice.call(arguments, 1)); + } + } + }); + return EventBus; + }(); + var EventEmitter = function() { + "use strict"; + var splitter = /\s+/, nextTick = getNextTick(); + return { + onSync: onSync, + onAsync: onAsync, + off: off, + trigger: trigger + }; + function on(method, types, cb, context) { + var type; + if (!cb) { + return this; + } + types = types.split(splitter); + cb = context ? bindContext(cb, context) : cb; + this._callbacks = this._callbacks || {}; + while (type = types.shift()) { + this._callbacks[type] = this._callbacks[type] || { + sync: [], + async: [] + }; + this._callbacks[type][method].push(cb); + } + return this; + } + function onAsync(types, cb, context) { + return on.call(this, "async", types, cb, context); + } + function onSync(types, cb, context) { + return on.call(this, "sync", types, cb, context); + } + function off(types) { + var type; + if (!this._callbacks) { + return this; + } + types = types.split(splitter); + while (type = types.shift()) { + delete this._callbacks[type]; + } + return this; + } + function trigger(types) { + var type, callbacks, args, syncFlush, asyncFlush; + if (!this._callbacks) { + return this; + } + types = types.split(splitter); + args = [].slice.call(arguments, 1); + while ((type = types.shift()) && (callbacks = this._callbacks[type])) { + syncFlush = getFlush(callbacks.sync, this, [ type ].concat(args)); + asyncFlush = getFlush(callbacks.async, this, [ type ].concat(args)); + syncFlush() && nextTick(asyncFlush); + } + return this; + } + function getFlush(callbacks, context, args) { + return flush; + function flush() { + var cancelled; + for (var i = 0, len = callbacks.length; !cancelled && i < len; i += 1) { + cancelled = callbacks[i].apply(context, args) === false; + } + return !cancelled; + } + } + function getNextTick() { + var nextTickFn; + if (window.setImmediate) { + nextTickFn = function nextTickSetImmediate(fn) { + setImmediate(function() { + fn(); + }); + }; + } else { + nextTickFn = function nextTickSetTimeout(fn) { + setTimeout(function() { + fn(); + }, 0); + }; + } + return nextTickFn; + } + function bindContext(fn, context) { + return fn.bind ? fn.bind(context) : function() { + fn.apply(context, [].slice.call(arguments, 0)); + }; + } + }(); + var highlight = function(doc) { + "use strict"; + var defaults = { + node: null, + pattern: null, + tagName: "strong", + className: null, + wordsOnly: false, + caseSensitive: false + }; + return function hightlight(o) { + var regex; + o = _.mixin({}, defaults, o); + if (!o.node || !o.pattern) { + return; + } + o.pattern = _.isArray(o.pattern) ? o.pattern : [ o.pattern ]; + regex = getRegex(o.pattern, o.caseSensitive, o.wordsOnly); + traverse(o.node, hightlightTextNode); + function hightlightTextNode(textNode) { + var match, patternNode, wrapperNode; + if (match = regex.exec(textNode.data)) { + wrapperNode = doc.createElement(o.tagName); + o.className && (wrapperNode.className = o.className); + patternNode = textNode.splitText(match.index); + patternNode.splitText(match[0].length); + wrapperNode.appendChild(patternNode.cloneNode(true)); + textNode.parentNode.replaceChild(wrapperNode, patternNode); + } + return !!match; + } + function traverse(el, hightlightTextNode) { + var childNode, TEXT_NODE_TYPE = 3; + for (var i = 0; i < el.childNodes.length; i++) { + childNode = el.childNodes[i]; + if (childNode.nodeType === TEXT_NODE_TYPE) { + i += hightlightTextNode(childNode) ? 1 : 0; + } else { + traverse(childNode, hightlightTextNode); + } + } + } + }; + function getRegex(patterns, caseSensitive, wordsOnly) { + var escapedPatterns = [], regexStr; + for (var i = 0, len = patterns.length; i < len; i++) { + escapedPatterns.push(_.escapeRegExChars(patterns[i])); + } + regexStr = wordsOnly ? "\\b(" + escapedPatterns.join("|") + ")\\b" : "(" + escapedPatterns.join("|") + ")"; + return caseSensitive ? new RegExp(regexStr) : new RegExp(regexStr, "i"); + } + }(window.document); + var Input = function() { + "use strict"; + var specialKeyCodeMap; + specialKeyCodeMap = { + 9: "tab", + 27: "esc", + 37: "left", + 39: "right", + 13: "enter", + 38: "up", + 40: "down" + }; + function Input(o, www) { + o = o || {}; + if (!o.input) { + $.error("input is missing"); + } + www.mixin(this); + this.$hint = $(o.hint); + this.$input = $(o.input); + this.query = this.$input.val(); + this.queryWhenFocused = this.hasFocus() ? this.query : null; + this.$overflowHelper = buildOverflowHelper(this.$input); + this._checkLanguageDirection(); + if (this.$hint.length === 0) { + this.setHint = this.getHint = this.clearHint = this.clearHintIfInvalid = _.noop; + } + } + Input.normalizeQuery = function(str) { + return _.toStr(str).replace(/^\s*/g, "").replace(/\s{2,}/g, " "); + }; + _.mixin(Input.prototype, EventEmitter, { + _onBlur: function onBlur() { + this.resetInputValue(); + this.trigger("blurred"); + }, + _onFocus: function onFocus() { + this.queryWhenFocused = this.query; + this.trigger("focused"); + }, + _onKeydown: function onKeydown($e) { + var keyName = specialKeyCodeMap[$e.which || $e.keyCode]; + this._managePreventDefault(keyName, $e); + if (keyName && this._shouldTrigger(keyName, $e)) { + this.trigger(keyName + "Keyed", $e); + } + }, + _onInput: function onInput() { + this._setQuery(this.getInputValue()); + this.clearHintIfInvalid(); + this._checkLanguageDirection(); + }, + _managePreventDefault: function managePreventDefault(keyName, $e) { + var preventDefault; + switch (keyName) { + case "up": + case "down": + preventDefault = !withModifier($e); + break; + + default: + preventDefault = false; + } + preventDefault && $e.preventDefault(); + }, + _shouldTrigger: function shouldTrigger(keyName, $e) { + var trigger; + switch (keyName) { + case "tab": + trigger = !withModifier($e); + break; + + default: + trigger = true; + } + return trigger; + }, + _checkLanguageDirection: function checkLanguageDirection() { + var dir = (this.$input.css("direction") || "ltr").toLowerCase(); + if (this.dir !== dir) { + this.dir = dir; + this.$hint.attr("dir", dir); + this.trigger("langDirChanged", dir); + } + }, + _setQuery: function setQuery(val, silent) { + var areEquivalent, hasDifferentWhitespace; + areEquivalent = areQueriesEquivalent(val, this.query); + hasDifferentWhitespace = areEquivalent ? this.query.length !== val.length : false; + this.query = val; + if (!silent && !areEquivalent) { + this.trigger("queryChanged", this.query); + } else if (!silent && hasDifferentWhitespace) { + this.trigger("whitespaceChanged", this.query); + } + }, + bind: function() { + var that = this, onBlur, onFocus, onKeydown, onInput; + onBlur = _.bind(this._onBlur, this); + onFocus = _.bind(this._onFocus, this); + onKeydown = _.bind(this._onKeydown, this); + onInput = _.bind(this._onInput, this); + this.$input.on("blur.tt", onBlur).on("focus.tt", onFocus).on("keydown.tt", onKeydown); + if (!_.isMsie() || _.isMsie() > 9) { + this.$input.on("input.tt", onInput); + } else { + this.$input.on("keydown.tt keypress.tt cut.tt paste.tt", function($e) { + if (specialKeyCodeMap[$e.which || $e.keyCode]) { + return; + } + _.defer(_.bind(that._onInput, that, $e)); + }); + } + return this; + }, + focus: function focus() { + this.$input.focus(); + }, + blur: function blur() { + this.$input.blur(); + }, + getLangDir: function getLangDir() { + return this.dir; + }, + getQuery: function getQuery() { + return this.query || ""; + }, + setQuery: function setQuery(val, silent) { + this.setInputValue(val); + this._setQuery(val, silent); + }, + hasQueryChangedSinceLastFocus: function hasQueryChangedSinceLastFocus() { + return this.query !== this.queryWhenFocused; + }, + getInputValue: function getInputValue() { + return this.$input.val(); + }, + setInputValue: function setInputValue(value) { + this.$input.val(value); + this.clearHintIfInvalid(); + this._checkLanguageDirection(); + }, + resetInputValue: function resetInputValue() { + this.setInputValue(this.query); + }, + getHint: function getHint() { + return this.$hint.val(); + }, + setHint: function setHint(value) { + this.$hint.val(value); + }, + clearHint: function clearHint() { + this.setHint(""); + }, + clearHintIfInvalid: function clearHintIfInvalid() { + var val, hint, valIsPrefixOfHint, isValid; + val = this.getInputValue(); + hint = this.getHint(); + valIsPrefixOfHint = val !== hint && hint.indexOf(val) === 0; + isValid = val !== "" && valIsPrefixOfHint && !this.hasOverflow(); + !isValid && this.clearHint(); + }, + hasFocus: function hasFocus() { + return this.$input.is(":focus"); + }, + hasOverflow: function hasOverflow() { + var constraint = this.$input.width() - 2; + this.$overflowHelper.text(this.getInputValue()); + return this.$overflowHelper.width() >= constraint; + }, + isCursorAtEnd: function() { + var valueLength, selectionStart, range; + valueLength = this.$input.val().length; + selectionStart = this.$input[0].selectionStart; + if (_.isNumber(selectionStart)) { + return selectionStart === valueLength; + } else if (document.selection) { + range = document.selection.createRange(); + range.moveStart("character", -valueLength); + return valueLength === range.text.length; + } + return true; + }, + destroy: function destroy() { + this.$hint.off(".tt"); + this.$input.off(".tt"); + this.$overflowHelper.remove(); + this.$hint = this.$input = this.$overflowHelper = $("<div>"); + } + }); + return Input; + function buildOverflowHelper($input) { + return $('<pre aria-hidden="true"></pre>').css({ + position: "absolute", + visibility: "hidden", + whiteSpace: "pre", + fontFamily: $input.css("font-family"), + fontSize: $input.css("font-size"), + fontStyle: $input.css("font-style"), + fontVariant: $input.css("font-variant"), + fontWeight: $input.css("font-weight"), + wordSpacing: $input.css("word-spacing"), + letterSpacing: $input.css("letter-spacing"), + textIndent: $input.css("text-indent"), + textRendering: $input.css("text-rendering"), + textTransform: $input.css("text-transform") + }).insertAfter($input); + } + function areQueriesEquivalent(a, b) { + return Input.normalizeQuery(a) === Input.normalizeQuery(b); + } + function withModifier($e) { + return $e.altKey || $e.ctrlKey || $e.metaKey || $e.shiftKey; + } + }(); + var Dataset = function() { + "use strict"; + var keys, nameGenerator; + keys = { + val: "tt-selectable-display", + obj: "tt-selectable-object" + }; + nameGenerator = _.getIdGenerator(); + function Dataset(o, www) { + o = o || {}; + o.templates = o.templates || {}; + o.templates.notFound = o.templates.notFound || o.templates.empty; + if (!o.source) { + $.error("missing source"); + } + if (!o.node) { + $.error("missing node"); + } + if (o.name && !isValidName(o.name)) { + $.error("invalid dataset name: " + o.name); + } + www.mixin(this); + this.highlight = !!o.highlight; + this.name = o.name || nameGenerator(); + this.limit = o.limit || 5; + this.displayFn = getDisplayFn(o.display || o.displayKey); + this.templates = getTemplates(o.templates, this.displayFn); + this.source = o.source.__ttAdapter ? o.source.__ttAdapter() : o.source; + this.async = _.isUndefined(o.async) ? this.source.length > 2 : !!o.async; + this._resetLastSuggestion(); + this.$el = $(o.node).addClass(this.classes.dataset).addClass(this.classes.dataset + "-" + this.name); + } + Dataset.extractData = function extractData(el) { + var $el = $(el); + if ($el.data(keys.obj)) { + return { + val: $el.data(keys.val) || "", + obj: $el.data(keys.obj) || null + }; + } + return null; + }; + _.mixin(Dataset.prototype, EventEmitter, { + _overwrite: function overwrite(query, suggestions) { + suggestions = suggestions || []; + if (suggestions.length) { + this._renderSuggestions(query, suggestions); + } else if (this.async && this.templates.pending) { + this._renderPending(query); + } else if (!this.async && this.templates.notFound) { + this._renderNotFound(query); + } else { + this._empty(); + } + this.trigger("rendered", this.name, suggestions, false); + }, + _append: function append(query, suggestions) { + suggestions = suggestions || []; + if (suggestions.length && this.$lastSuggestion.length) { + this._appendSuggestions(query, suggestions); + } else if (suggestions.length) { + this._renderSuggestions(query, suggestions); + } else if (!this.$lastSuggestion.length && this.templates.notFound) { + this._renderNotFound(query); + } + this.trigger("rendered", this.name, suggestions, true); + }, + _renderSuggestions: function renderSuggestions(query, suggestions) { + var $fragment; + $fragment = this._getSuggestionsFragment(query, suggestions); + this.$lastSuggestion = $fragment.children().last(); + this.$el.html($fragment).prepend(this._getHeader(query, suggestions)).append(this._getFooter(query, suggestions)); + }, + _appendSuggestions: function appendSuggestions(query, suggestions) { + var $fragment, $lastSuggestion; + $fragment = this._getSuggestionsFragment(query, suggestions); + $lastSuggestion = $fragment.children().last(); + this.$lastSuggestion.after($fragment); + this.$lastSuggestion = $lastSuggestion; + }, + _renderPending: function renderPending(query) { + var template = this.templates.pending; + this._resetLastSuggestion(); + template && this.$el.html(template({ + query: query, + dataset: this.name + })); + }, + _renderNotFound: function renderNotFound(query) { + var template = this.templates.notFound; + this._resetLastSuggestion(); + template && this.$el.html(template({ + query: query, + dataset: this.name + })); + }, + _empty: function empty() { + this.$el.empty(); + this._resetLastSuggestion(); + }, + _getSuggestionsFragment: function getSuggestionsFragment(query, suggestions) { + var that = this, fragment; + fragment = document.createDocumentFragment(); + _.each(suggestions, function getSuggestionNode(suggestion) { + var $el, context; + context = that._injectQuery(query, suggestion); + $el = $(that.templates.suggestion(context)).data(keys.obj, suggestion).data(keys.val, that.displayFn(suggestion)).addClass(that.classes.suggestion + " " + that.classes.selectable); + fragment.appendChild($el[0]); + }); + this.highlight && highlight({ + className: this.classes.highlight, + node: fragment, + pattern: query + }); + return $(fragment); + }, + _getFooter: function getFooter(query, suggestions) { + return this.templates.footer ? this.templates.footer({ + query: query, + suggestions: suggestions, + dataset: this.name + }) : null; + }, + _getHeader: function getHeader(query, suggestions) { + return this.templates.header ? this.templates.header({ + query: query, + suggestions: suggestions, + dataset: this.name + }) : null; + }, + _resetLastSuggestion: function resetLastSuggestion() { + this.$lastSuggestion = $(); + }, + _injectQuery: function injectQuery(query, obj) { + return _.isObject(obj) ? _.mixin({ + _query: query + }, obj) : obj; + }, + update: function update(query) { + var that = this, canceled = false, syncCalled = false, rendered = 0; + this.cancel(); + this.cancel = function cancel() { + canceled = true; + that.cancel = $.noop; + that.async && that.trigger("asyncCanceled", query); + }; + this.source(query, sync, async); + !syncCalled && sync([]); + function sync(suggestions) { + if (syncCalled) { + return; + } + syncCalled = true; + suggestions = (suggestions || []).slice(0, that.limit); + rendered = suggestions.length; + that._overwrite(query, suggestions); + if (rendered < that.limit && that.async) { + that.trigger("asyncRequested", query); + } + } + function async(suggestions) { + suggestions = suggestions || []; + if (!canceled && rendered < that.limit) { + that.cancel = $.noop; + rendered += suggestions.length; + that._append(query, suggestions.slice(0, that.limit - rendered)); + that.async && that.trigger("asyncReceived", query); + } + } + }, + cancel: $.noop, + clear: function clear() { + this._empty(); + this.cancel(); + this.trigger("cleared"); + }, + isEmpty: function isEmpty() { + return this.$el.is(":empty"); + }, + destroy: function destroy() { + this.$el = $("<div>"); + } + }); + return Dataset; + function getDisplayFn(display) { + display = display || _.stringify; + return _.isFunction(display) ? display : displayFn; + function displayFn(obj) { + return obj[display]; + } + } + function getTemplates(templates, displayFn) { + return { + notFound: templates.notFound && _.templatify(templates.notFound), + pending: templates.pending && _.templatify(templates.pending), + header: templates.header && _.templatify(templates.header), + footer: templates.footer && _.templatify(templates.footer), + suggestion: templates.suggestion || suggestionTemplate + }; + function suggestionTemplate(context) { + return $("<div>").text(displayFn(context)); + } + } + function isValidName(str) { + return /^[_a-zA-Z0-9-]+$/.test(str); + } + }(); + var Menu = function() { + "use strict"; + function Menu(o, www) { + var that = this; + o = o || {}; + if (!o.node) { + $.error("node is required"); + } + www.mixin(this); + this.$node = $(o.node); + this.query = null; + this.datasets = _.map(o.datasets, initializeDataset); + function initializeDataset(oDataset) { + var node = that.$node.find(oDataset.node).first(); + oDataset.node = node.length ? node : $("<div>").appendTo(that.$node); + return new Dataset(oDataset, www); + } + } + _.mixin(Menu.prototype, EventEmitter, { + _onSelectableClick: function onSelectableClick($e) { + this.trigger("selectableClicked", $($e.currentTarget)); + }, + _onRendered: function onRendered(type, dataset, suggestions, async) { + this.$node.toggleClass(this.classes.empty, this._allDatasetsEmpty()); + this.trigger("datasetRendered", dataset, suggestions, async); + }, + _onCleared: function onCleared() { + this.$node.toggleClass(this.classes.empty, this._allDatasetsEmpty()); + this.trigger("datasetCleared"); + }, + _propagate: function propagate() { + this.trigger.apply(this, arguments); + }, + _allDatasetsEmpty: function allDatasetsEmpty() { + return _.every(this.datasets, isDatasetEmpty); + function isDatasetEmpty(dataset) { + return dataset.isEmpty(); + } + }, + _getSelectables: function getSelectables() { + return this.$node.find(this.selectors.selectable); + }, + _removeCursor: function _removeCursor() { + var $selectable = this.getActiveSelectable(); + $selectable && $selectable.removeClass(this.classes.cursor); + }, + _ensureVisible: function ensureVisible($el) { + var elTop, elBottom, nodeScrollTop, nodeHeight; + elTop = $el.position().top; + elBottom = elTop + $el.outerHeight(true); + nodeScrollTop = this.$node.scrollTop(); + nodeHeight = this.$node.height() + parseInt(this.$node.css("paddingTop"), 10) + parseInt(this.$node.css("paddingBottom"), 10); + if (elTop < 0) { + this.$node.scrollTop(nodeScrollTop + elTop); + } else if (nodeHeight < elBottom) { + this.$node.scrollTop(nodeScrollTop + (elBottom - nodeHeight)); + } + }, + bind: function() { + var that = this, onSelectableClick; + onSelectableClick = _.bind(this._onSelectableClick, this); + this.$node.on("click.tt", this.selectors.selectable, onSelectableClick); + _.each(this.datasets, function(dataset) { + dataset.onSync("asyncRequested", that._propagate, that).onSync("asyncCanceled", that._propagate, that).onSync("asyncReceived", that._propagate, that).onSync("rendered", that._onRendered, that).onSync("cleared", that._onCleared, that); + }); + return this; + }, + isOpen: function isOpen() { + return this.$node.hasClass(this.classes.open); + }, + open: function open() { + this.$node.addClass(this.classes.open); + }, + close: function close() { + this.$node.removeClass(this.classes.open); + this._removeCursor(); + }, + setLanguageDirection: function setLanguageDirection(dir) { + this.$node.attr("dir", dir); + }, + selectableRelativeToCursor: function selectableRelativeToCursor(delta) { + var $selectables, $oldCursor, oldIndex, newIndex; + $oldCursor = this.getActiveSelectable(); + $selectables = this._getSelectables(); + oldIndex = $oldCursor ? $selectables.index($oldCursor) : -1; + newIndex = oldIndex + delta; + newIndex = (newIndex + 1) % ($selectables.length + 1) - 1; + newIndex = newIndex < -1 ? $selectables.length - 1 : newIndex; + return newIndex === -1 ? null : $selectables.eq(newIndex); + }, + setCursor: function setCursor($selectable) { + this._removeCursor(); + if ($selectable = $selectable && $selectable.first()) { + $selectable.addClass(this.classes.cursor); + this._ensureVisible($selectable); + } + }, + getSelectableData: function getSelectableData($el) { + return $el && $el.length ? Dataset.extractData($el) : null; + }, + getActiveSelectable: function getActiveSelectable() { + var $selectable = this._getSelectables().filter(this.selectors.cursor).first(); + return $selectable.length ? $selectable : null; + }, + getTopSelectable: function getTopSelectable() { + var $selectable = this._getSelectables().first(); + return $selectable.length ? $selectable : null; + }, + update: function update(query) { + var isValidUpdate = query !== this.query; + if (isValidUpdate) { + this.query = query; + _.each(this.datasets, updateDataset); + } + return isValidUpdate; + function updateDataset(dataset) { + dataset.update(query); + } + }, + empty: function empty() { + _.each(this.datasets, clearDataset); + this.query = null; + this.$node.addClass(this.classes.empty); + function clearDataset(dataset) { + dataset.clear(); + } + }, + destroy: function destroy() { + this.$node.off(".tt"); + this.$node = $("<div>"); + _.each(this.datasets, destroyDataset); + function destroyDataset(dataset) { + dataset.destroy(); + } + } + }); + return Menu; + }(); + var DefaultMenu = function() { + "use strict"; + var s = Menu.prototype; + function DefaultMenu() { + Menu.apply(this, [].slice.call(arguments, 0)); + } + _.mixin(DefaultMenu.prototype, Menu.prototype, { + open: function open() { + !this._allDatasetsEmpty() && this._show(); + return s.open.apply(this, [].slice.call(arguments, 0)); + }, + close: function close() { + this._hide(); + return s.close.apply(this, [].slice.call(arguments, 0)); + }, + _onRendered: function onRendered() { + if (this._allDatasetsEmpty()) { + this._hide(); + } else { + this.isOpen() && this._show(); + } + return s._onRendered.apply(this, [].slice.call(arguments, 0)); + }, + _onCleared: function onCleared() { + if (this._allDatasetsEmpty()) { + this._hide(); + } else { + this.isOpen() && this._show(); + } + return s._onCleared.apply(this, [].slice.call(arguments, 0)); + }, + setLanguageDirection: function setLanguageDirection(dir) { + this.$node.css(dir === "ltr" ? this.css.ltr : this.css.rtl); + return s.setLanguageDirection.apply(this, [].slice.call(arguments, 0)); + }, + _hide: function hide() { + this.$node.hide(); + }, + _show: function show() { + this.$node.css("display", "block"); + } + }); + return DefaultMenu; + }(); + var Typeahead = function() { + "use strict"; + function Typeahead(o, www) { + var onFocused, onBlurred, onEnterKeyed, onTabKeyed, onEscKeyed, onUpKeyed, onDownKeyed, onLeftKeyed, onRightKeyed, onQueryChanged, onWhitespaceChanged; + o = o || {}; + if (!o.input) { + $.error("missing input"); + } + if (!o.menu) { + $.error("missing menu"); + } + if (!o.eventBus) { + $.error("missing event bus"); + } + www.mixin(this); + this.eventBus = o.eventBus; + this.minLength = _.isNumber(o.minLength) ? o.minLength : 1; + this.input = o.input; + this.menu = o.menu; + this.enabled = true; + this.active = false; + this.input.hasFocus() && this.activate(); + this.dir = this.input.getLangDir(); + this._hacks(); + this.menu.bind().onSync("selectableClicked", this._onSelectableClicked, this).onSync("asyncRequested", this._onAsyncRequested, this).onSync("asyncCanceled", this._onAsyncCanceled, this).onSync("asyncReceived", this._onAsyncReceived, this).onSync("datasetRendered", this._onDatasetRendered, this).onSync("datasetCleared", this._onDatasetCleared, this); + onFocused = c(this, "activate", "open", "_onFocused"); + onBlurred = c(this, "deactivate", "_onBlurred"); + onEnterKeyed = c(this, "isActive", "isOpen", "_onEnterKeyed"); + onTabKeyed = c(this, "isActive", "isOpen", "_onTabKeyed"); + onEscKeyed = c(this, "isActive", "_onEscKeyed"); + onUpKeyed = c(this, "isActive", "open", "_onUpKeyed"); + onDownKeyed = c(this, "isActive", "open", "_onDownKeyed"); + onLeftKeyed = c(this, "isActive", "isOpen", "_onLeftKeyed"); + onRightKeyed = c(this, "isActive", "isOpen", "_onRightKeyed"); + onQueryChanged = c(this, "_openIfActive", "_onQueryChanged"); + onWhitespaceChanged = c(this, "_openIfActive", "_onWhitespaceChanged"); + this.input.bind().onSync("focused", onFocused, this).onSync("blurred", onBlurred, this).onSync("enterKeyed", onEnterKeyed, this).onSync("tabKeyed", onTabKeyed, this).onSync("escKeyed", onEscKeyed, this).onSync("upKeyed", onUpKeyed, this).onSync("downKeyed", onDownKeyed, this).onSync("leftKeyed", onLeftKeyed, this).onSync("rightKeyed", onRightKeyed, this).onSync("queryChanged", onQueryChanged, this).onSync("whitespaceChanged", onWhitespaceChanged, this).onSync("langDirChanged", this._onLangDirChanged, this); + } + _.mixin(Typeahead.prototype, { + _hacks: function hacks() { + var $input, $menu; + $input = this.input.$input || $("<div>"); + $menu = this.menu.$node || $("<div>"); + $input.on("blur.tt", function($e) { + var active, isActive, hasActive; + active = document.activeElement; + isActive = $menu.is(active); + hasActive = $menu.has(active).length > 0; + if (_.isMsie() && (isActive || hasActive)) { + $e.preventDefault(); + $e.stopImmediatePropagation(); + _.defer(function() { + $input.focus(); + }); + } + }); + $menu.on("mousedown.tt", function($e) { + $e.preventDefault(); + }); + }, + _onSelectableClicked: function onSelectableClicked(type, $el) { + this.select($el); + }, + _onDatasetCleared: function onDatasetCleared() { + this._updateHint(); + }, + _onDatasetRendered: function onDatasetRendered(type, dataset, suggestions, async) { + this._updateHint(); + this.eventBus.trigger("render", suggestions, async, dataset); + }, + _onAsyncRequested: function onAsyncRequested(type, dataset, query) { + this.eventBus.trigger("asyncrequest", query, dataset); + }, + _onAsyncCanceled: function onAsyncCanceled(type, dataset, query) { + this.eventBus.trigger("asynccancel", query, dataset); + }, + _onAsyncReceived: function onAsyncReceived(type, dataset, query) { + this.eventBus.trigger("asyncreceive", query, dataset); + }, + _onFocused: function onFocused() { + this._minLengthMet() && this.menu.update(this.input.getQuery()); + }, + _onBlurred: function onBlurred() { + if (this.input.hasQueryChangedSinceLastFocus()) { + this.eventBus.trigger("change", this.input.getQuery()); + } + }, + _onEnterKeyed: function onEnterKeyed(type, $e) { + var $selectable; + if ($selectable = this.menu.getActiveSelectable()) { + this.select($selectable) && $e.preventDefault(); + } + }, + _onTabKeyed: function onTabKeyed(type, $e) { + var $selectable; + if ($selectable = this.menu.getActiveSelectable()) { + this.select($selectable) && $e.preventDefault(); + } else if ($selectable = this.menu.getTopSelectable()) { + this.autocomplete($selectable) && $e.preventDefault(); + } + }, + _onEscKeyed: function onEscKeyed() { + this.close(); + }, + _onUpKeyed: function onUpKeyed() { + this.moveCursor(-1); + }, + _onDownKeyed: function onDownKeyed() { + this.moveCursor(+1); + }, + _onLeftKeyed: function onLeftKeyed() { + if (this.dir === "rtl" && this.input.isCursorAtEnd()) { + this.autocomplete(this.menu.getTopSelectable()); + } + }, + _onRightKeyed: function onRightKeyed() { + if (this.dir === "ltr" && this.input.isCursorAtEnd()) { + this.autocomplete(this.menu.getTopSelectable()); + } + }, + _onQueryChanged: function onQueryChanged(e, query) { + this._minLengthMet(query) ? this.menu.update(query) : this.menu.empty(); + }, + _onWhitespaceChanged: function onWhitespaceChanged() { + this._updateHint(); + }, + _onLangDirChanged: function onLangDirChanged(e, dir) { + if (this.dir !== dir) { + this.dir = dir; + this.menu.setLanguageDirection(dir); + } + }, + _openIfActive: function openIfActive() { + this.isActive() && this.open(); + }, + _minLengthMet: function minLengthMet(query) { + query = _.isString(query) ? query : this.input.getQuery() || ""; + return query.length >= this.minLength; + }, + _updateHint: function updateHint() { + var $selectable, data, val, query, escapedQuery, frontMatchRegEx, match; + $selectable = this.menu.getTopSelectable(); + data = this.menu.getSelectableData($selectable); + val = this.input.getInputValue(); + if (data && !_.isBlankString(val) && !this.input.hasOverflow()) { + query = Input.normalizeQuery(val); + escapedQuery = _.escapeRegExChars(query); + frontMatchRegEx = new RegExp("^(?:" + escapedQuery + ")(.+$)", "i"); + match = frontMatchRegEx.exec(data.val); + match && this.input.setHint(val + match[1]); + } else { + this.input.clearHint(); + } + }, + isEnabled: function isEnabled() { + return this.enabled; + }, + enable: function enable() { + this.enabled = true; + }, + disable: function disable() { + this.enabled = false; + }, + isActive: function isActive() { + return this.active; + }, + activate: function activate() { + if (this.isActive()) { + return true; + } else if (!this.isEnabled() || this.eventBus.before("active")) { + return false; + } else { + this.active = true; + this.eventBus.trigger("active"); + return true; + } + }, + deactivate: function deactivate() { + if (!this.isActive()) { + return true; + } else if (this.eventBus.before("idle")) { + return false; + } else { + this.active = false; + this.close(); + this.eventBus.trigger("idle"); + return true; + } + }, + isOpen: function isOpen() { + return this.menu.isOpen(); + }, + open: function open() { + if (!this.isOpen() && !this.eventBus.before("open")) { + this.menu.open(); + this._updateHint(); + this.eventBus.trigger("open"); + } + return this.isOpen(); + }, + close: function close() { + if (this.isOpen() && !this.eventBus.before("close")) { + this.menu.close(); + this.input.clearHint(); + this.input.resetInputValue(); + this.eventBus.trigger("close"); + } + return !this.isOpen(); + }, + setVal: function setVal(val) { + this.input.setQuery(_.toStr(val)); + }, + getVal: function getVal() { + return this.input.getQuery(); + }, + select: function select($selectable) { + var data = this.menu.getSelectableData($selectable); + if (data && !this.eventBus.before("select", data.obj)) { + this.input.setQuery(data.val, true); + this.eventBus.trigger("select", data.obj); + this.close(); + return true; + } + return false; + }, + autocomplete: function autocomplete($selectable) { + var query, data, isValid; + query = this.input.getQuery(); + data = this.menu.getSelectableData($selectable); + isValid = data && query !== data.val; + if (isValid && !this.eventBus.before("autocomplete", data.obj)) { + this.input.setQuery(data.val); + this.eventBus.trigger("autocomplete", data.obj); + return true; + } + return false; + }, + moveCursor: function moveCursor(delta) { + var query, $candidate, data, payload, cancelMove; + query = this.input.getQuery(); + $candidate = this.menu.selectableRelativeToCursor(delta); + data = this.menu.getSelectableData($candidate); + payload = data ? data.obj : null; + cancelMove = this._minLengthMet() && this.menu.update(query); + if (!cancelMove && !this.eventBus.before("cursorchange", payload)) { + this.menu.setCursor($candidate); + if (data) { + this.input.setInputValue(data.val); + } else { + this.input.resetInputValue(); + this._updateHint(); + } + this.eventBus.trigger("cursorchange", payload); + return true; + } + return false; + }, + destroy: function destroy() { + this.input.destroy(); + this.menu.destroy(); + } + }); + return Typeahead; + function c(ctx) { + var methods = [].slice.call(arguments, 1); + return function() { + var args = [].slice.call(arguments); + _.each(methods, function(method) { + return ctx[method].apply(ctx, args); + }); + }; + } + }(); + (function() { + "use strict"; + var old, keys, methods; + old = $.fn.typeahead; + keys = { + www: "tt-www", + attrs: "tt-attrs", + typeahead: "tt-typeahead" + }; + methods = { + initialize: function initialize(o, datasets) { + var www; + datasets = _.isArray(datasets) ? datasets : [].slice.call(arguments, 1); + o = o || {}; + www = WWW(o.classNames); + return this.each(attach); + function attach() { + var $input, $wrapper, $hint, $menu, defaultHint, defaultMenu, eventBus, input, menu, typeahead, MenuConstructor; + _.each(datasets, function(d) { + d.highlight = !!o.highlight; + }); + $input = $(this); + $wrapper = $(www.html.wrapper); + $hint = $elOrNull(o.hint); + $menu = $elOrNull(o.menu); + defaultHint = o.hint !== false && !$hint; + defaultMenu = o.menu !== false && !$menu; + defaultHint && ($hint = buildHintFromInput($input, www)); + defaultMenu && ($menu = $(www.html.menu).css(www.css.menu)); + $hint && $hint.val(""); + $input = prepInput($input, www); + if (defaultHint || defaultMenu) { + $wrapper.css(www.css.wrapper); + $input.css(defaultHint ? www.css.input : www.css.inputWithNoHint); + $input.wrap($wrapper).parent().prepend(defaultHint ? $hint : null).append(defaultMenu ? $menu : null); + } + MenuConstructor = defaultMenu ? DefaultMenu : Menu; + eventBus = new EventBus({ + el: $input + }); + input = new Input({ + hint: $hint, + input: $input + }, www); + menu = new MenuConstructor({ + node: $menu, + datasets: datasets + }, www); + typeahead = new Typeahead({ + input: input, + menu: menu, + eventBus: eventBus, + minLength: o.minLength + }, www); + $input.data(keys.www, www); + $input.data(keys.typeahead, typeahead); + } + }, + isEnabled: function isEnabled() { + var enabled; + ttEach(this.first(), function(t) { + enabled = t.isEnabled(); + }); + return enabled; + }, + enable: function enable() { + ttEach(this, function(t) { + t.enable(); + }); + return this; + }, + disable: function disable() { + ttEach(this, function(t) { + t.disable(); + }); + return this; + }, + isActive: function isActive() { + var active; + ttEach(this.first(), function(t) { + active = t.isActive(); + }); + return active; + }, + activate: function activate() { + ttEach(this, function(t) { + t.activate(); + }); + return this; + }, + deactivate: function deactivate() { + ttEach(this, function(t) { + t.deactivate(); + }); + return this; + }, + isOpen: function isOpen() { + var open; + ttEach(this.first(), function(t) { + open = t.isOpen(); + }); + return open; + }, + open: function open() { + ttEach(this, function(t) { + t.open(); + }); + return this; + }, + close: function close() { + ttEach(this, function(t) { + t.close(); + }); + return this; + }, + select: function select(el) { + var success = false, $el = $(el); + ttEach(this.first(), function(t) { + success = t.select($el); + }); + return success; + }, + autocomplete: function autocomplete(el) { + var success = false, $el = $(el); + ttEach(this.first(), function(t) { + success = t.autocomplete($el); + }); + return success; + }, + moveCursor: function moveCursoe(delta) { + var success = false; + ttEach(this.first(), function(t) { + success = t.moveCursor(delta); + }); + return success; + }, + val: function val(newVal) { + var query; + if (!arguments.length) { + ttEach(this.first(), function(t) { + query = t.getVal(); + }); + return query; + } else { + ttEach(this, function(t) { + t.setVal(newVal); + }); + return this; + } + }, + destroy: function destroy() { + ttEach(this, function(typeahead, $input) { + revert($input); + typeahead.destroy(); + }); + return this; + } + }; + $.fn.typeahead = function(method) { + if (methods[method]) { + return methods[method].apply(this, [].slice.call(arguments, 1)); + } else { + return methods.initialize.apply(this, arguments); + } + }; + $.fn.typeahead.noConflict = function noConflict() { + $.fn.typeahead = old; + return this; + }; + function ttEach($els, fn) { + $els.each(function() { + var $input = $(this), typeahead; + (typeahead = $input.data(keys.typeahead)) && fn(typeahead, $input); + }); + } + function buildHintFromInput($input, www) { + return $input.clone().addClass(www.classes.hint).removeData().css(www.css.hint).css(getBackgroundStyles($input)).prop("readonly", true).removeAttr("id name placeholder required").attr({ + autocomplete: "off", + spellcheck: "false", + tabindex: -1 + }); + } + function prepInput($input, www) { + $input.data(keys.attrs, { + dir: $input.attr("dir"), + autocomplete: $input.attr("autocomplete"), + spellcheck: $input.attr("spellcheck"), + style: $input.attr("style") + }); + $input.addClass(www.classes.input).attr({ + autocomplete: "off", + spellcheck: false + }); + try { + !$input.attr("dir") && $input.attr("dir", "auto"); + } catch (e) {} + return $input; + } + function getBackgroundStyles($el) { + return { + backgroundAttachment: $el.css("background-attachment"), + backgroundClip: $el.css("background-clip"), + backgroundColor: $el.css("background-color"), + backgroundImage: $el.css("background-image"), + backgroundOrigin: $el.css("background-origin"), + backgroundPosition: $el.css("background-position"), + backgroundRepeat: $el.css("background-repeat"), + backgroundSize: $el.css("background-size") + }; + } + function revert($input) { + var www, $wrapper; + www = $input.data(keys.www); + $wrapper = $input.parent().filter(www.selectors.wrapper); + _.each($input.data(keys.attrs), function(val, key) { + _.isUndefined(val) ? $input.removeAttr(key) : $input.attr(key, val); + }); + $input.removeData(keys.typeahead).removeData(keys.www).removeData(keys.attr).removeClass(www.classes.input); + if ($wrapper.length) { + $input.detach().insertAfter($wrapper); + $wrapper.remove(); + } + } + function $elOrNull(obj) { + var isValid, $el; + isValid = _.isJQuery(obj) || _.isElement(obj); + $el = isValid ? $(obj).first() : []; + return $el.length ? $el : null; + } + })(); +});
\ No newline at end of file diff --git a/wqflask/wqflask/templates/collections/view.html b/wqflask/wqflask/templates/collections/view.html index 801b58c7..a2b63374 100644 --- a/wqflask/wqflask/templates/collections/view.html +++ b/wqflask/wqflask/templates/collections/view.html @@ -59,6 +59,10 @@ Comparison Bar Chart </button> + <button id="send_to_webgestalt" class="btn btn-primary submit_special" data-url="/webgestalt_page" title="WebGestalt" > + WebGestalt + </button> + <button id="send_to_bnw" class="btn btn-primary submit_special" data-url="/bnw_page" title="Bayesian Network" > BNW </button> @@ -266,7 +270,7 @@ return submit_special(url) }); - $("#send_to_bnw").on("click", function() { + $("#send_to_webgestalt, #send_to_bnw").on("click", function() { traits = $("#trait_table input:checked").map(function() { return $(this).val(); }).get(); diff --git a/wqflask/wqflask/templates/gsearch_gene.html b/wqflask/wqflask/templates/gsearch_gene.html index 71e290f3..66073555 100644 --- a/wqflask/wqflask/templates/gsearch_gene.html +++ b/wqflask/wqflask/templates/gsearch_gene.html @@ -112,7 +112,7 @@ 'data': "index" }, { - 'title': "Record ID", + 'title': "Record", 'type': "natural", 'data': null, 'render': function(data, type, row, meta) { @@ -157,12 +157,14 @@ { 'title': "Mean", 'type': "natural", - 'data': "mean" + 'data': "mean", + 'orderSequence': [ "desc", "asc"] }, { 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", 'type': "natural", - 'data': "LRS_score_repr" + 'data': "LRS_score_repr", + 'orderSequence': [ "desc", "asc"] }, { 'title': "Max LRS Location", @@ -172,7 +174,8 @@ { 'title': "Additive Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", 'type': "natural", - 'data': "additive" + 'data': "additive", + 'orderSequence': [ "desc", "asc"] } ], 'order': [[1, "asc" ]], diff --git a/wqflask/wqflask/templates/gsearch_pheno.html b/wqflask/wqflask/templates/gsearch_pheno.html index 941bf39d..168b2846 100644 --- a/wqflask/wqflask/templates/gsearch_pheno.html +++ b/wqflask/wqflask/templates/gsearch_pheno.html @@ -29,51 +29,10 @@ </form> <br /> <div> - <table id="trait_table" class="table-hover table-striped cell-border" style="float: left;"> - <thead> - <tr> - <th></th> - <th data-export="Index">Index</th> - <th data-export="Species">Species</th> - <th data-export="Group">Group</th> - <th data-export="Record">Record</th> - <th data-export="Description">Description</th> - <th data-export="Authors">Authors</th> - <th data-export="Year">Year</th> - <th data-export="Max LRS">Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank"><sup>?</sup></a></th> - <th data-export="Additive Effect">Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank"><sup>?</sup></a></th> - </tr> - </thead> + <table id="trait_table" width="100%" class="table-hover table-striped cell-border" style="float: left;"> <tbody> - {% for this_trait in trait_list %} - <tr id="trait:{{ this_trait.name }}:{{ this_trait.dataset }}"> - <td align="center" style="padding-right: 0px; padding-left: 5px;"><input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="{{ data_hmac('{}:{}'.format(this_trait.name, this_trait.dataset)) }}"></td> - <td align="right" data-export="{{ loop.index }}">{{ loop.index }}</td> - <td data-export="{{ this_trait.species }}">{{ this_trait.species }}</td> - <td data-export="{{ this_trait.group }}">{{ this_trait.group }}</td> - <td data-export="{{ this_trait.name }}"><a href="{{ url_for('show_trait_page', trait_id = this_trait.name, dataset = this_trait.dataset)}}">{{ this_trait.name }}</a></td> - <td data-export="{{ this_trait.description }}">{{ this_trait.description }}</td> - <td data-export="{{ this_trait.authors }}">{{ this_trait.authors }}</td> - <td data-export="{{ this_trait.pubmed_text }}" data-order="{{ this_trait.pubmed_text }}"><a href="{{ this_trait.pubmed_link }}">{{ this_trait.pubmed_text }}</a></td> - <td data-export="{% if this_trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % this_trait.LRS_score_repr|float }}{% else %}N/A{% endif %}" align="right">{% if this_trait.LRS_score_repr != "N/A" %}{{ '%0.1f' % this_trait.LRS_score_repr|float }}{% else %}N/A{% endif %}</td> - <td data-export="{% if this_trait.additive %}{{ this_trait.additive }}{% else %}N/A{% endif %}" align="right">{% if this_trait.additive %}{{ '%0.6f' % this_trait.additive }}{% else %}N/A{% endif %}</td> - </tr> - {% endfor %} + <td colspan="100%" align="center"><br><b><font size="15">Loading...</font></b><br></td> </tbody> - <tfoot> - <tr> - <th></th> - <th>Index</th> - <th>Species</th> - <th>Group</th> - <th>Record</th> - <th>Description</th> - <th>Authors</th> - <th>Year</th> - <th data-export="Max LRS">Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank"><img style="width: 15px; height: 15px;" src="/static/new/images/question_mark.jpg"></a></th> - <th data-export="Additive Effect">Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank"><img style="width: 15px; height: 15px;" src="/static/new/images/question_mark.jpg"></a></th> - </tr> - </tfoot> </table> </div> </div> @@ -85,13 +44,16 @@ {% block js %} <script language="javascript" type="text/javascript" src="/static/new/js_external/md5.min.js"></script> - <script language="javascript" type="text/javascript" src="/static/new/javascript/search_results.js"></script> <script language="javascript" type="text/javascript" src="https://cdn.datatables.net/1.10.12/js/jquery.dataTables.min.js"></script> <script language="javascript" type="text/javascript" src="/static/new/js_external/jszip.min.js"></script> <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script> <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colReorder.js"></script> <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/dataTables.colResize.js"></script> - + + <script type='text/javascript'> + var the_rows = {{ trait_list|safe }}; + </script> + <script type="text/javascript" charset="utf-8"> $.fn.dataTable.ext.order['dom-checkbox'] = function ( settings, col ) { @@ -101,7 +63,7 @@ }; $(document).ready( function () { - + $('#trait_table tr').click(function(event) { if (event.target.type !== 'checkbox') { $(':checkbox', this).trigger('click'); @@ -110,54 +72,140 @@ console.time("Creating table"); $('#trait_table').DataTable( { + 'drawCallback': function( settings ) { + $('#trait_table tr').click(function(event) { + if (event.target.type !== 'checkbox') { + $(':checkbox', this).trigger('click'); + } + }); + $('.trait_checkbox:checkbox').on("change", change_buttons); + }, "createdRow": function ( row, data, index ) { - $('td', row).eq(0).attr('style', 'padding: 0px;'); - $('td', row).eq(0).attr('align', 'center'); + $('td', row).eq(0).attr("style", "text-align: center; padding: 4px 10px 2px 10px;"); + $('td', row).eq(1).attr("align", "right"); $('td', row).eq(5).attr('title', $('td', row).eq(5).text()); - if ($('td', row).eq(5).text().length > 50) { - $('td', row).eq(5).text($('td', row).eq(5).text().substring(0, 50)); + if ($('td', row).eq(5).text().length > 150) { + $('td', row).eq(5).text($('td', row).eq(5).text().substring(0, 150)); $('td', row).eq(5).text($('td', row).eq(5).text() + '...') } $('td', row).eq(6).attr('title', $('td', row).eq(6).text()); - if ($('td', row).eq(6).text().length > 40) { - $('td', row).eq(6).text($('td', row).eq(6).text().substring(0, 40)); + if ($('td', row).eq(6).text().length > 150) { + $('td', row).eq(6).text($('td', row).eq(6).text().substring(0, 150)); $('td', row).eq(6).text($('td', row).eq(6).text() + '...') } + $('td', row).slice(8,11).attr("align", "right"); }, - "paging": false, - "columns": [ - { "orderDataType": "dom-checkbox" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural", "width": "5%"}, - { "type": "natural", "width": "8%" } - ], - "columnDefs": [ + 'data': the_rows, + 'columns': [ + { + 'data': null, + 'orderDataType': "dom-checkbox", + 'render': function(data, type, row, meta) { + return '<input type="checkbox" name="searchResult" class="trait_checkbox checkbox" value="' + data.hmac + '">' + } + }, + { + 'title': "Index", + 'type': "natural", + 'data': "index" + }, + { + 'title': "Species", + 'type': "natural", + 'data': "species" + }, + { + 'title': "Group", + 'type': "natural", + 'width': "10%", + 'data': "group" + }, { - "targets": 0, - "orderable": false, - "orderDataType": "dom-checkbox" + 'title': "Record", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + return '<a href="/show_trait?trait_id=' + data.name + '&dataset=' + data.dataset + '">' + data.name + '</a>' + } + }, + { + 'title': "Description", + 'type': "natural", + 'width': "25%", + 'data': "description" + }, + { + 'title': "Authors", + 'type': "natural", + 'width': "25%", + 'data': "authors" + }, + { + 'title': "Year", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + if (data.pubmed_id != "N/A"){ + return '<a href="' + data.pubmed_link + '">' + data.pubmed_text + '</a>' + } else { + return data.pubmed_text + } + }, + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "LRS_score_repr", + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS Location", + 'type': "natural", + 'width': "10%", + 'data': "max_lrs_text" + }, + { + 'title': "Additive Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "additive", + 'orderSequence': [ "desc", "asc"] } ], - "order": [[1, "asc" ]], - "sDom": "tir", - "autoWidth": false, - "deferRender": true, - "bSortClasses": false, - "scrollY": "600px", - "scrollCollapse": true, - "scroller": true, - "scrollX": true, - "paging": false, - "orderClasses": true + 'order': [[1, "asc" ]], + 'sDom': "tir", + 'autoWidth': false, + 'deferRender': true, + 'paging': false, + 'orderClasses': true, + 'processing': true, + 'language': { + 'loadingRecords': ' ', + 'processing': 'Loading...' + } } ); + + $('#trait_table').append( + '<tfoot>' + + '<tr>' + + '<th></th>' + + '<th>Index</th>' + + '<th>Species</th> ' + + '<th>Group</th>' + + '<th>Record</th>' + + '<th>Description</th>' + + '<th>Authors</th>' + + '<th>Year</th>' + + '<th>Max LRS</th>' + + '<th>Max LRS Location</th>' + + '<th>Additive Effect</th>' + + '</tr>' + + '</tfoot>' + ); + console.timeEnd("Creating table"); }); </script> + <script language="javascript" type="text/javascript" src="/static/new/javascript/search_results.js"></script> {% endblock %} diff --git a/wqflask/wqflask/templates/search_result_page.html b/wqflask/wqflask/templates/search_result_page.html index 7096a18b..79a279f8 100644 --- a/wqflask/wqflask/templates/search_result_page.html +++ b/wqflask/wqflask/templates/search_result_page.html @@ -63,53 +63,12 @@ <button class="btn btn-default" id="export_traits">Download CSV</button> </form> <br /> -<!-- - Removing this until more options are added and work correctly - {% if dataset.type == 'ProbeSet' %} - <button class="btn btn-default" id="open_options">Open Extra Options</button> - <br /> - <br /> - <div id="extra_options" style="display:none;"> - Min LRS <input type="text" id="min" class="form-control" style="width: 60px; display: inline;"> - Max LRS <input type="text" id="max" class="form-control" style="width: 60px; display: inline;"> - </div> - <br /> - <br /> - {% endif %} ---> - <div id="table_container" style="width: {% if dataset.type == 'ProbeSet' %}1300{% elif dataset.type == 'Publish' %}1300{% elif dataset.type == 'Geno' %}400{% endif %}px;"> + <div id="table_container"> <table class="table-hover table-striped cell-border" id='trait_table' style="float: left;"> - <thead> - <tr> - <th></th> - {% for header in header_fields %} - {% if header == 'Max LRS' %} - <th data-export="Max LRS">Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank" style="color: white;"><sup>?</sup></a></th> - {% elif header == 'Additive Effect' %} - <th data-export="Additive Effect">Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank" style="color: white;"><sup>?</sup></a></th> - {% else %} - <th data-export="{{header}}">{{header}}</th> - {% endif %} - {% endfor %} - </tr> - </thead> - {% if trait_list|length > 20 %} - <tfoot> - <tr> - <th></th> - {% for header in header_fields %} - {% if header == 'Max LRS' %} - <th data-export="Max LRS">Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank" style="color: white;"><sup>?</sup></a></th> - {% elif header == 'Additive Effect' %} - <th data-export="Additive Effect">Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank" style="color: white;"><sup>?</sup></a></th> - {% else %} - <th data-export="{{header}}">{{header}}</th> - {% endif %} - {% endfor %} - </tr> - </tfoot> - {% endif %} + <tbody> + <td colspan="100%" align="center"><br><b><font size="15">Loading...</font></b><br></td> + </tbody> </table> </div> </div> @@ -132,10 +91,18 @@ <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/extensions/buttons.colVis.min.js"></script> <script type='text/javascript'> - var json_trait_list = {{ json_trait_list|safe }}; + var trait_list = {{ trait_list|safe }}; </script> <script type="text/javascript" charset="utf-8"> + + $.fn.dataTable.ext.order['dom-checkbox'] = function ( settings, col ) + { + return this.api().column( col, {order:'index'} ).nodes().map( function ( td, i ) { + return $('input', td).prop('checked') ? '1' : '0'; + } ); + }; + $(document).ready( function () { $('#trait_table tr').click(function(event) { @@ -172,11 +139,10 @@ } console.time("Creating table"); - {% if dataset.type == 'ProbeSet' %} //ZS: Need to make sort by symbol, also need to make sure blank symbol fields at the bottom and symbols starting with numbers below letters $('#trait_table').DataTable( { - "drawCallback": function( settings ) { + 'drawCallback': function( settings ) { $('#trait_table tr').click(function(event) { if (event.target.type !== 'checkbox') { $(':checkbox', this).trigger('click'); @@ -184,12 +150,12 @@ }); $('.trait_checkbox:checkbox').on("change", change_buttons); }, - "createdRow": function ( row, data, index ) { - $('td', row).eq(0).attr('style', 'padding: 0px;'); - $('td', row).eq(0).attr('align', 'center'); - $('td', row).eq(1).attr('align', 'right'); + 'createdRow': function ( row, data, index ) { + $('td', row).eq(0).attr("style", "text-align: center; padding: 0px 10px 2px 10px;"); + $('td', row).eq(1).attr("align", "right"); $('td', row).eq(1).attr('data-export', index+1); $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text()); + {% if dataset.type == 'ProbeSet' %} $('td', row).eq(3).attr('title', $('td', row).eq(3).text()); $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text()); if ($('td', row).eq(3).text().length > 20) { @@ -202,168 +168,188 @@ $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 55)); $('td', row).eq(4).text($('td', row).eq(4).text() + '...') } + $('td', row).slice(6,10).attr("align", "right"); $('td', row).eq(5).attr('data-export', $('td', row).eq(5).text()); - $('td', row).eq(6).attr('align', 'right'); $('td', row).eq(6).attr('data-export', $('td', row).eq(6).text()); - $('td', row).eq(7).attr('align', 'right'); $('td', row).eq(7).attr('data-export', $('td', row).eq(7).text()); $('td', row).eq(8).attr('data-export', $('td', row).eq(8).text()); - $('td', row).eq(9).attr('align', 'right'); $('td', row).eq(9).attr('data-export', $('td', row).eq(9).text()); - }, - "data": json_trait_list, - "columns": [ - { "type": "natural", "width": "2%" }, - { "type": "natural", "width": "5%" }, - { "type": "natural", "width": "10%" }, - { "type": "natural", "width": "8%" }, - { "type": "natural" }, - { "type": "natural", "width": "12%" }, - { "type": "natural", "width": "4%" }, - { "type": "natural", "width": "5%" }, - { "type": "natural", "width": "12%" }, - { "type": "natural", "width": "5%" } - ], - "columnDefs": [ { - "targets": 0, - "orderable": false - } ], - "order": [[1, "asc" ]], - buttons: [ - { - extend: 'columnsToggle', - columns: ':not(:first-child)', - postfixButtons: [ 'colvisRestore' ] - } - ], - "sDom": "BRZtir", - "iDisplayLength": -1, - "autoWidth": false, - "deferRender": true, - "bSortClasses": false, - "paging": false, - "orderClasses": true - } ); - - {% elif dataset.type == 'Publish' %} - $('#trait_table').DataTable( { - "drawCallback": function( settings ) { - $('#trait_table tr').click(function(event) { - if (event.target.type !== 'checkbox') { - $(':checkbox', this).trigger('click'); - } - }); - $('.trait_checkbox:checkbox').on("change", change_buttons); - }, - "createdRow": function ( row, data, index ) { - $('td', row).eq(0).attr('style', 'padding: 0px;'); - $('td', row).eq(0).attr('align', 'center'); - $('td', row).eq(1).attr('align', 'right'); - $('td', row).eq(1).attr('data-export', index+1); - $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text()); + {% elif dataset.type == 'Publish' %} $('td', row).eq(3).attr('title', $('td', row).eq(3).text()); $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text()); - if ($('td', row).eq(3).text().length > 50) { - $('td', row).eq(3).text($('td', row).eq(3).text().substring(0, 50)); + if ($('td', row).eq(3).text().length > 20) { + $('td', row).eq(3).text($('td', row).eq(3).text().substring(0, 20)); $('td', row).eq(3).text($('td', row).eq(3).text() + '...') } $('td', row).eq(4).attr('title', $('td', row).eq(4).text()); $('td', row).eq(4).attr('data-export', $('td', row).eq(4).text()); - if ($('td', row).eq(4).text().length > 50) { - $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 50)); + if ($('td', row).eq(4).text().length > 55) { + $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 55)); $('td', row).eq(4).text($('td', row).eq(4).text() + '...') } - $('td', row).eq(4).text($('td', row).eq(4).text().substring(0, 30)); - //$('td', row).eq(5).attr('align', 'right'); + $('td', row).slice(6,9).attr("align", "right"); $('td', row).eq(5).attr('data-export', $('td', row).eq(5).text()); - $('td', row).eq(6).attr('align', 'right'); $('td', row).eq(6).attr('data-export', $('td', row).eq(6).text()); $('td', row).eq(7).attr('data-export', $('td', row).eq(7).text()); - $('td', row).eq(8).attr('align', 'right'); $('td', row).eq(8).attr('data-export', $('td', row).eq(8).text()); - }, - "data": json_trait_list, - "columns": [ - { "type": "natural", "width": "2%" }, - { "type": "natural", "width": "5%" }, - { "type": "natural", "width": "6%" }, - { "type": "natural" }, - { "type": "natural", "width": "30%" }, - { "type": "natural", "width": "5%" }, - { "type": "natural", "width": "6%" }, - { "type": "natural", "width": "10%" }, - { "type": "natural", "width": "8%" } - ], - "columnDefs": [ { - "targets": 0, - "orderable": false - } ], - "order": [[1, "asc" ]], - buttons: [ - { - extend: 'columnsToggle', - columns: ':not(:first-child)', - postfixButtons: [ 'colvisRestore' ] - } - ], - "sDom": "BRZtir", - "iDisplayLength": -1, - "autoWidth": false, - "deferRender": true, - "bSortClasses": false, - "paging": false, - "orderClasses": true - } ); - {% elif dataset.type == 'Geno' %} - $('#trait_table').DataTable( { - "drawCallback": function( settings ) { - $('#trait_table tr').click(function(event) { - if (event.target.type !== 'checkbox') { - $(':checkbox', this).trigger('click'); - } - }); - $('.trait_checkbox:checkbox').on("change", change_buttons); - }, - "createdRow": function ( row, data, index ) { - $('td', row).eq(0).attr('style', 'padding: 0px;'); - $('td', row).eq(0).attr('align', 'center'); - $('td', row).eq(1).attr('align', 'right'); - $('td', row).eq(1).attr('data-export', index+1); - $('td', row).eq(2).attr('data-export', $('td', row).eq(2).text()); + {% elif dataset.type == 'Geno' %} $('td', row).eq(3).attr('data-export', $('td', row).eq(3).text()); + {% endif %} }, - "data": json_trait_list, - "columns": [ - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" }, - { "type": "natural" } + 'data': trait_list, + 'columns': [ + { + 'data': null, + 'orderDataType': "dom-checkbox", + 'orderSequence': [ "desc", "asc"], + 'render': function(data, type, row, meta) { + return '<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + data.hmac + '">' + } + }, + { + 'title': "Index", + 'type': "natural", + 'data': "index" + }, + { + 'title': "Record", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + return '<a href="/show_trait?trait_id=' + data.name + '&dataset=' + data.dataset + '">' + data.name + '</a>' + } + }{% if dataset.type == 'ProbeSet' %}, + { + 'title': "Symbol", + 'type': "natural", + 'data': "symbol" + }, + { + 'title': "Description", + 'type': "natural", + 'data': "description" + }, + { + 'title': "Location", + 'type': "natural", + 'data': "location" + }, + { + 'title': "Mean", + 'type': "natural", + 'data': "mean", + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "lrs_score", + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS Location", + 'type': "natural", + 'data': "lrs_location" + }, + { + 'title': "Additive Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "additive", + 'orderSequence': [ "desc", "asc"] + }{% elif dataset.type == 'Publish' %}, + { + 'title': "Description", + 'type': "natural", + 'data': "description" + }, + { + 'title': "Authors", + 'type': "natural", + 'data': "authors" + }, + { + 'title': "Year", + 'type': "natural", + 'data': null, + 'render': function(data, type, row, meta) { + if (data.pubmed_id != "N/A"){ + return '<a href="' + data.pubmed_link + '">' + data.pubmed_text + '</a>' + } else { + return data.pubmed_text + } + }, + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS<a href=\"http://genenetwork.org//glossary.html#LRS\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "lrs_score", + 'orderSequence': [ "desc", "asc"] + }, + { + 'title': "Max LRS Location", + 'type': "natural", + 'data': "lrs_location" + }, + { + 'title': "Additive Effect<a href=\"http://genenetwork.org//glossary.html#A\" target=\"_blank\" style=\"color: white;\"><sup>?</sup></a>", + 'type': "natural", + 'data': "additive", + 'orderSequence': [ "desc", "asc"] + }{% elif dataset.type == 'Geno' %}, + { + 'title': "Location", + 'type': "natural", + 'data': "location" + }{% endif %} ], - "columnDefs": [ { - "targets": 0, - "orderable": false - } ], "order": [[1, "asc" ]], buttons: [ { extend: 'columnsToggle', - columns: ':not(:first-child)', + columns: function( idx, data, node ) { + if (idx != 0) { + return true; + } else { + return false; + } + }, postfixButtons: [ 'colvisRestore' ] } ], - "sDom": "BRZtir", - "iDisplayLength": -1, - "autoWidth": false, - "deferRender": true, - "bSortClasses": false, - "paging": false, - "orderClasses": true + 'sDom': "Btir", + 'autoWidth': false, + 'deferRender': true, + 'paging': false, + 'orderClasses': true, + 'processing': true, + 'language': { + 'loadingRecords': ' ', + 'processing': 'Loading...' + } } ); - {% endif %} + + if (trait_list.length > 20) { + $('#trait_table').append( + '<tfoot>' + + '<tr>' + + '<th></th>' + + '<th>Index</th>' + + '<th>Record</th>' + + '<th>Symbol</th> ' + + '<th>Description</th>' + + '<th>Location</th>' + + '<th>Mean</th>' + + '<th>Max LRS <a href="http://genenetwork.org//glossary.html#LRS" target="_blank" style="color: white;"><sup>?</sup></a></th>' + + '<th>Max LRS Location</th>' + + '<th>Additive Effect <a href="http://genenetwork.org//glossary.html#A" target="_blank" style="color: white;"><sup>?</sup></a></th>' + + '</tr>' + + '</tfoot>' + ); + } console.timeEnd("Creating table"); - var table = $('#trait_table').DataTable(); $('#redraw').click(function() { var table = $('#trait_table').DataTable(); table.colReorder.reset() diff --git a/wqflask/wqflask/templates/snp_browser.html b/wqflask/wqflask/templates/snp_browser.html index 87cbab84..45a14626 100644 --- a/wqflask/wqflask/templates/snp_browser.html +++ b/wqflask/wqflask/templates/snp_browser.html @@ -2,6 +2,7 @@ {% block css %} <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/css/jquery.dataTables.css" /> <link rel="stylesheet" type="text/css" href="/static/new/packages/DataTables/extensions/buttons.bootstrap.css" /> + <link rel="stylesheet" type="text/css" href="/static/new/css/typeahead-bootstrap.css" /> <link rel="stylesheet" type="text/css" href="/static/new/css/snp_browser.css" /> {% endblock %} {% block content %} @@ -216,6 +217,9 @@ {% block js %} <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.js"></script> <script language="javascript" type="text/javascript" src="/static/new/packages/DataTables/js/dataTables.naturalSort.js"></script> + <script language="javascript" type="text/javascript" src="/static/new/js_external/typeahead.bundle.js"></script> + + <script language="javascript" type="text/javascript" src="/static/new/javascript/typeahead_rn6.json"></script> <script type='text/javascript'> var json_rows = {{ table_rows|safe }}; @@ -224,6 +228,38 @@ <script language="javascript"> + var substringMatcher = function(strs) { + return function findMatches(q, cb) { + var matches, substringRegex; + + // an array that will be populated with substring matches + matches = []; + + // regex used to determine if a string contains the substring `q` + substrRegex = new RegExp(q, 'i'); + + // iterate through the pool of strings and for any string that + // contains the substring `q`, add it to the `matches` array + $.each(strs, function(i, str) { + if (substrRegex.test(str)) { + matches.push(str); + } + }); + + cb(matches); + }; + }; + + $('input[name=gene_name]').typeahead({ + minLength: 2, + hint: true, + highlight: true + }, + { + name: 'rn6-genes', + source: substringMatcher(rat_genes) + }); + {% if filtered_results is defined %} $("#results_table").DataTable( { 'data': json_rows, diff --git a/wqflask/wqflask/templates/webgestalt_page.html b/wqflask/wqflask/templates/webgestalt_page.html new file mode 100644 index 00000000..36b3cebf --- /dev/null +++ b/wqflask/wqflask/templates/webgestalt_page.html @@ -0,0 +1,35 @@ +{% extends "base.html" %} +{% block title %}{% if wrong_input == "True" %}WebGestalt Error{% else %}Opening WebGestalt{% endif %}{% endblock %} +{% block content %} + {% if wrong_input == "True" %} + {{ header("Error") }} + + <div class="container"> + {% if chip_name == "mixed" %} + <h3>Sorry, the analysis was interrupted because your selections from GeneNetwork apparently include data from more than one array platform (i.e., Affymetrix U74A and M430 2.0). Most WebGestalt analyses assume that you are using a single array type and compute statistical values on the basis of that particular array. Please reselect traits from a signle platform and submit again.</h3> + {% elif chip_name == "not_microarray" %} + <h3>You need to select at least one microarray trait to submit.</hr> + {% elif '_NA' in chip_name %} + <h3>Sorry, the analysis was interrupted because your selections from GeneNetwork apparently include data from platform {{ chip_name }} which is unknown by WebGestalt. Please reselect traits and submit again.</h3> + {% else %} + <h3>Sorry, an error occurred while submitting your traits to WebGestalt.</h3> + {% endif %} + </div> + {% else %} + <div class="container"> + <h3>Opening WebGestalt...</h3> + </div> + <form method="post" action="http://www.webgestalt.org/option.php" name="WebGestalt"> + {% for key in hidden_vars %} + <input type="hidden" name="{{ key }}" value="{{ hidden_vars[key] }}"> + {% endfor %} + </form> + {% endif %} +{% endblock %} +{% block js %} +{% if wrong_input == "False" %} +<script type="text/javascript"> + setTimeout('document.WebGestalt.submit()', 1000); +</script> +{% endif %} +{% endblock %}
\ No newline at end of file diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index a97679db..7c2ed80d 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -43,7 +43,7 @@ from base.data_set import DataSet # Used by YAML in marker_regression from wqflask.show_trait import show_trait from wqflask.show_trait import export_trait_data from wqflask.heatmap import heatmap -from wqflask.external_tools import send_to_bnw +from wqflask.external_tools import send_to_bnw, send_to_webgestalt from wqflask.comparison_bar_chart import comparison_bar_chart from wqflask.marker_regression import run_mapping from wqflask.marker_regression import display_mapping_results @@ -485,6 +485,24 @@ def bnw_page(): return rendered_template +@app.route("/webgestalt_page", methods=('POST',)) +def webgestalt_page(): + logger.info("In run WebGestalt, request.form is:", pf(request.form)) + logger.info(request.url) + + start_vars = request.form + + traits = [trait.strip() for trait in start_vars['trait_list'].split(',')] + if traits[0] != "": + template_vars = send_to_webgestalt.SendToWebGestalt(request.form) + + result = template_vars.__dict__ + rendered_template = render_template("webgestalt_page.html", **result) + else: + rendered_template = render_template("empty_collection.html", **{'tool':'BNW'}) + + return rendered_template + @app.route("/comparison_bar_chart", methods=('POST',)) def comp_bar_chart_page(): logger.info("In comp bar chart, request.form is:", pf(request.form)) |