diff options
Diffstat (limited to 'wqflask')
5 files changed, 9 insertions, 6 deletions
diff --git a/wqflask/wqflask/marker_regression/marker_regression.py b/wqflask/wqflask/marker_regression/marker_regression.py index 510b26af..a8324442 100644 --- a/wqflask/wqflask/marker_regression/marker_regression.py +++ b/wqflask/wqflask/marker_regression/marker_regression.py @@ -57,7 +57,9 @@ class MarkerRegression(object): self.samples = [] # Want only ones with values self.vals = [] - #for sample in self.this_trait.data.keys(): + all_samples_ordered = self.dataset.group.all_samples_ordered() + primary_sample_names = list(all_samples_ordered) + for sample in self.dataset.group.samplelist: in_trait_data = False for item in self.this_trait.data: diff --git a/wqflask/wqflask/marker_regression/marker_regression_gn1.py b/wqflask/wqflask/marker_regression/marker_regression_gn1.py index 9573a9de..d0509c75 100644 --- a/wqflask/wqflask/marker_regression/marker_regression_gn1.py +++ b/wqflask/wqflask/marker_regression/marker_regression_gn1.py @@ -169,6 +169,7 @@ class MarkerRegression(object): self.species = start_vars['species'] #Needing for form submission when doing single chr mapping or remapping after changing options + self.samples = start_vars['samples'] self.vals = start_vars['vals'] self.mapping_method = start_vars['mapping_method'] if self.mapping_method == "rqtl_geno": @@ -801,8 +802,8 @@ class MarkerRegression(object): plotXScale = self.drawGraphBackground(canvas, gifmap, offset=newoffset, zoom= zoom, startMb=startMb, endMb = endMb) #draw bootstap - if self.bootChecked and not self.multipleInterval: - self.drawBootStrapResult(canvas, self.nboot, drawAreaHeight, plotXScale, offset=newoffset) + #if self.bootChecked and not self.multipleInterval: + # self.drawBootStrapResult(canvas, self.nboot, drawAreaHeight, plotXScale, offset=newoffset) # Draw clickable region and gene band if selected if self.plotScale == 'physic' and self.selectedChr > -1: diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js index 419aa7a2..feaaac30 100644 --- a/wqflask/wqflask/static/new/javascript/show_trait.js +++ b/wqflask/wqflask/static/new/javascript/show_trait.js @@ -173,7 +173,7 @@ }; make_table = function() { var header, key, row, row_line, table, the_id, the_rows, value, _i, _len, _ref, _ref1; - header = "<thead><tr><th> </th>"; + header = "<thead><tr><th>Statistic</th>"; _ref = js_data.sample_group_types; for (key in _ref) { if (!__hasProp.call(_ref, key)) continue; diff --git a/wqflask/wqflask/templates/marker_regression_gn1.html b/wqflask/wqflask/templates/marker_regression_gn1.html index 978ea55f..5389978a 100644 --- a/wqflask/wqflask/templates/marker_regression_gn1.html +++ b/wqflask/wqflask/templates/marker_regression_gn1.html @@ -15,7 +15,7 @@ <input type="hidden" name="trait_id" value="{{ this_trait.name }}"> <input type="hidden" name="dataset" value="{{ dataset.name }}"> <input type="hidden" name="method" value="{{ mapping_method }}"> - {% for sample in dataset.group.samplelist %} + {% for sample in samples %} <input type="hidden" name="value:{{ sample }}" value="{{ vals[loop.index - 1] }}"> {% endfor %} <input type="hidden" name="maf"> diff --git a/wqflask/wqflask/templates/show_trait_statistics.html b/wqflask/wqflask/templates/show_trait_statistics.html index 3ee8bdea..62d6dcfd 100644 --- a/wqflask/wqflask/templates/show_trait_statistics.html +++ b/wqflask/wqflask/templates/show_trait_statistics.html @@ -26,7 +26,7 @@ <div class="tab-content"> <div class="tab-pane active" id="stats_tab"> <div style="padding: 20px" class="form-horizontal"> - <table border="1" id="stats_table" style="width: 300px; float: left;" class="table table-hover table-striped cell-border"></table> + <table border="1" id="stats_table" style="width: 450px; float: left;" class="table table-hover table-striped cell-border"></table> </div> </div> <div class="tab-pane" id="histogram_tab"> |