diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/base/data_set.py | 1 | ||||
| -rw-r--r-- | wqflask/base/webqtlConfig.py | 1 | ||||
| -rw-r--r-- | wqflask/maintenance/gen_select_dataset.py | 14 | ||||
| -rw-r--r-- | wqflask/wqflask/show_trait/show_trait.py | 19 | ||||
| -rw-r--r-- | wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | 5452 | ||||
| -rw-r--r-- | wqflask/wqflask/templates/show_trait_details.html | 6 |
6 files changed, 2755 insertions, 2738 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 41de8492..4df47083 100644 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -912,6 +912,7 @@ class MrnaAssayDataSet(DataSet): 'blatseq', 'targetseq', 'chipid', 'comments', 'strand_probe', 'strand_gene', + 'proteinid', 'probe_set_target_region', 'probe_set_specificity', 'probe_set_blat_score', diff --git a/wqflask/base/webqtlConfig.py b/wqflask/base/webqtlConfig.py index 0b884815..9dddc63e 100644 --- a/wqflask/base/webqtlConfig.py +++ b/wqflask/base/webqtlConfig.py @@ -56,6 +56,7 @@ ENSEMBLETRANSCRIPT_URL="http://useast.ensembl.org/Mus_musculus/Transcript/Idhist DBSNP = 'http://ensembl.org/Mus_musculus/Variation/Population?v=%s' PROTEIN_ATLAS_URL = "http://www.proteinatlas.org/search/%s" OPEN_TARGETS_URL = "https://genetics.opentargets.org/gene/%s" +UNIPROT_URL = "https://www.uniprot.org/uniprot/%s" # Temporary storage (note that this TMPDIR can be set as an # environment variable - use utility.tools.TEMPDIR when you diff --git a/wqflask/maintenance/gen_select_dataset.py b/wqflask/maintenance/gen_select_dataset.py index be028bdd..4005d423 100644 --- a/wqflask/maintenance/gen_select_dataset.py +++ b/wqflask/maintenance/gen_select_dataset.py @@ -284,13 +284,13 @@ def main(): types = get_types(groups) datasets = get_datasets(types) - species.append(('All Species', 'All Species')) - groups['All Species'] = [('All Groups', 'All Groups')] - types['All Species'] = {} - types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')] - datasets['All Species'] = {} - datasets['All Species']['All Groups'] = {} - datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')] + #species.append(('All Species', 'All Species')) + #groups['All Species'] = [('All Groups', 'All Groups')] + #types['All Species'] = {} + #types['All Species']['All Groups'] = [('Phenotypes', 'Phenotypes')] + #datasets['All Species'] = {} + #datasets['All Species']['All Groups'] = {} + #datasets['All Species']['All Groups']['Phenotypes'] = [('All Phenotypes','All Phenotypes')] data = dict(species=species, groups=groups, diff --git a/wqflask/wqflask/show_trait/show_trait.py b/wqflask/wqflask/show_trait/show_trait.py index 18909dd5..b87ba8ec 100644 --- a/wqflask/wqflask/show_trait/show_trait.py +++ b/wqflask/wqflask/show_trait/show_trait.py @@ -267,6 +267,10 @@ class ShowTrait(object): genbank_id = genbank_id[0:-1] self.genbank_link = webqtlConfig.GENBANK_ID % genbank_id + self.uniprot_link = None + if check_if_attr_exists(self.this_trait, 'proteinid'): + self.uniprot_link = webqtlConfig.UNIPROT_URL % self.this_trait.proteinid + self.genotation_link = self.gtex_link = self.genebridge_link = self.ucsc_blat_link = self.biogps_link = self.protein_atlas_link = None self.string_link = self.panther_link = self.aba_link = self.ebi_gwas_link = self.wiki_pi_link = self.genemania_link = self.ensembl_link = None if self.this_trait.symbol: @@ -359,6 +363,10 @@ class ShowTrait(object): def make_sample_lists(self): all_samples_ordered = self.dataset.group.all_samples_ordered() + parent_f1_samples = [] + if self.dataset.group.parlist and self.dataset.group.f1list: + parent_f1_samples = self.dataset.group.parlist + self.dataset.group.f1list + primary_sample_names = list(all_samples_ordered) if not self.temp_trait: @@ -371,8 +379,10 @@ class ShowTrait(object): all_samples_ordered.append(sample) other_sample_names.append(sample) - if self.dataset.group.species == "human": + #ZS: CFW is here because the .geno file doesn't properly contain its full list of samples. This should probably be fixed. + if self.dataset.group.species == "human" or (set(primary_sample_names) == set(parent_f1_samples)) or self.dataset.group.name == "CFW": primary_sample_names += other_sample_names + other_sample_names = [] if other_sample_names: primary_header = "%s Only" % (self.dataset.group.name) @@ -384,11 +394,8 @@ class ShowTrait(object): sample_group_type='primary', header=primary_header) - if other_sample_names and self.dataset.group.species != "human" and self.dataset.group.name != "CFW": - parent_f1_samples = None - if self.dataset.group.parlist and self.dataset.group.f1list: - parent_f1_samples = self.dataset.group.parlist + self.dataset.group.f1list - + #if other_sample_names and self.dataset.group.species != "human" and self.dataset.group.name != "CFW": + if len(other_sample_names) > 0: other_sample_names.sort() #Sort other samples if parent_f1_samples: other_sample_names = parent_f1_samples + other_sample_names diff --git a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json index cf44ab40..0fd9321c 100644 --- a/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json +++ b/wqflask/wqflask/static/new/javascript/dataset_menu_structure.json @@ -1,5747 +1,5749 @@ { "datasets": { - "All Species": { - "All Groups": { - "Phenotypes": [ - [ - "All Phenotypes", - "All Phenotypes" - ] - ] - } - }, "arabidopsis": { "BayXSha": { "Genotypes": [ [ - "None", - "BayXShaGeno", + "None", + "BayXShaGeno", "BayXSha Genotypes" ] - ], + ], "Phenotypes": [ [ - "642", - "BayXShaPublish", + "642", + "BayXShaPublish", "BayXSha Published Phenotypes" ] ] - }, + }, "ColXBur": { "Genotypes": [ [ - "None", - "ColXBurGeno", + "None", + "ColXBurGeno", "ColXBur Genotypes" ] - ], + ], "Phenotypes": [ [ - "623", - "ColXBurPublish", + "623", + "ColXBurPublish", "ColXBur Published Phenotypes" ] ] - }, + }, "ColXCvi": { "Genotypes": [ [ - "None", - "ColXCviGeno", + "None", + "ColXCviGeno", "ColXCvi Genotypes" ] - ], + ], "Phenotypes": [ [ - "640", - "ColXCviPublish", + "640", + "ColXCviPublish", "ColXCvi Published Phenotypes" ] ] } - }, + }, "barley": { "QSM": { "Leaf mRNA": [ [ - "236", - "B1LI0809R", + "236", + "B1LI0809R", "Barley1 Leaf INOC TTKS (Aug09) RMA" - ], + ], [ - "235", - "B1LI0809M5", + "235", + "B1LI0809M5", "Barley1 Leaf INOC TTKS (Aug09) MAS5" - ], + ], [ - "237", - "B1MI0809M5", + "237", + "B1MI0809M5", "Barley1 Leaf MOCK TTKS (Aug09) MAS5" - ], + ], [ - "238", - "B1MI0809R", + "238", + "B1MI0809R", "Barley1 Leaf MOCK TTKS (Aug09) RMA" ] ] - }, + }, "SXM": { "Embryo mRNA": [ [ - "128", - "B139_K_1206_R", + "128", + "B139_K_1206_R", "Barley1 Embryo gcRMA SCRI (Dec06)" - ], + ], [ - "124", - "B139_K_1206_M", + "124", + "B139_K_1206_M", "Barley1 Embryo MAS 5.0 SCRI (Dec06)" - ], + ], [ - "114", - "B150_K_0406_R", + "114", + "B150_K_0406_R", "Barley1 Embryo0 gcRMA SCRI (Apr06)" ] - ], + ], "Genotypes": [ [ - "615", - "SXMGeno", + "615", + "SXMGeno", "SXM Genotypes" ] - ], + ], "Leaf mRNA": [ [ - "127", - "B30_K_1206_M", + "127", + "B30_K_1206_M", "Barley1 Leaf MAS 5.0 SCRI (Dec06)" - ], + ], [ - "125", - "B30_K_1206_R", + "125", + "B30_K_1206_R", "Barley1 Leaf gcRMA SCRI (Dec06)" - ], + ], [ - "126", - "B30_K_1206_Rn", + "126", + "B30_K_1206_Rn", "Barley1 Leaf gcRMAn SCRI (Dec06)" ] - ], + ], "Phenotypes": [ [ - "608", - "SXMPublish", + "608", + "SXMPublish", "Barley SMP Published Phenotypes" ] ] } - }, + }, "drosophila": { "DGRP": { "Whole Body mRNA": [ [ - "297", - "NCSU_DrosWB_LC_RMA_0111", + "297", + "NCSU_DrosWB_LC_RMA_0111", "NCSU Drosophila Whole Body (Jan11) RMA" ] ] - }, + }, "Oregon-R_x_2b3": { "Whole Body mRNA": [ [ - "249", - "UAB_DrosWB_LC_RMA_1009", + "249", + "UAB_DrosWB_LC_RMA_1009", "UAB Whole body D.m. mRNA control (Oct09) RMA" - ], + ], [ - "250", - "UAB_DrosWB_LE_RMA_1009", + "250", + "UAB_DrosWB_LE_RMA_1009", "UAB Whole body D.m. mRNA lead (pbAc) (Oct09) RMA" ] ] } - }, + }, "human": { "AD-cases-controls": { "Brain mRNA": [ [ - "314", - "GSE5281_F_RMA_N_0709", + "314", + "GSE5281_F_RMA_N_0709", "GSE5281 Human Brain Normal Full Liang (Jul09) RMA" - ], + ], [ - "313", - "GSE5281_F_RMA_Alzh_0709", + "313", + "GSE5281_F_RMA_Alzh_0709", "GSE5281 Human Brain Alzheimer Full Liang (Jul09) RMA" - ], + ], [ - "233", - "GSE5281_F_RMA0709", + "233", + "GSE5281_F_RMA0709", "GSE5281 Human Brain Full Liang (Jul09) RMA" - ], + ], [ - "232", - "GSE5281_RMA0709", + "232", + "GSE5281_RMA0709", "GSE5281 Human Brain Best 102 Liang (Jul09) RMA" ] ] - }, + }, "AD-cases-controls-Myers": { "Brain mRNA": [ [ - "234", - "GSE15222_F_RI_0409", + "234", + "GSE15222_F_RI_0409", "GSE15222 Human Brain All Cases Myers (Apr09) RankInv" - ], + ], [ - "290", - "GSE15222_F_N_RI_0409", + "290", + "GSE15222_F_N_RI_0409", "GSE15222 Human Brain Normal Myers (Apr09) RankInv" - ], + ], [ - "289", - "GSE15222_F_A_RI_0409", + "289", + "GSE15222_F_A_RI_0409", "GSE15222 Human Brain Alzheimer Myers (Apr09) RankInv" ] - ], + ], "Genotypes": [ [ - "None", - "AD-cases-controls-MyersGeno", + "None", + "AD-cases-controls-MyersGeno", "AD-cases-controls-Myers Genotypes" ] - ], + ], "Phenotypes": [ [ - "None", - "AD-cases-controls-MyersPublish", + "None", + "AD-cases-controls-MyersPublish", "AD-cases-controls-Myers Published Phenotypes" ] ] - }, + }, "Aging-Brain-UCI": { "Entorhinal Cortex mRNA": [ [ - "460", - "UCI_EC_0913", + "460", + "UCI_EC_0913", "GSE11882 UCI Human Entorhinal Cortex Affy U133 Plus2 (Sep13) RMA" ] - ], + ], "Hippocampus mRNA": [ [ - "461", - "UCI_HC_0913", + "461", + "UCI_HC_0913", "GSE11882 UCI Human Hippocampus Affy U133 Plus2 (Sep13) RMA" ] - ], + ], "Phenotypes": [ [ - "None", - "Aging-Brain-UCIPublish", + "None", + "Aging-Brain-UCIPublish", "Aging-Brain-UCI Published Phenotypes" ] - ], + ], "Postcentral Gyrus mRNA": [ [ - "462", - "UCI_PCG_0913", + "462", + "UCI_PCG_0913", "GSE11882 UCI Human Postcentral Gyrus Affy U133 Plus2 (Sep13) RMA" ] - ], + ], "Superior Frontal Gyrus mRNA": [ [ - "463", - "UCI_SG_0913", + "463", + "UCI_SG_0913", "GSE11882 UCI Human Superior Frontal Gyrus Affy U133 Plus2 (Sep13) RMA" ] ] - }, + }, "Brain-Normal-NIH-Gibbs": { "Cerebellum mRNA": [ [ - "481", - "GSE15745-GPL6104_Cer0510", + "481", + "GSE15745-GPL6104_Cer0510", "GSE15745 NIH Human Brain Cerebellum ILM humanRef-8 v2.0 (May10) RankInv" ] - ], + ], "Pons mRNA": [ [ - "484", - "GSE15745-GPL6104_Po0510", + "484", + "GSE15745-GPL6104_Po0510", "GSE15745 NIH Human Brain Pons ILM humanRef-8 v2.0 (May10) RankInv" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "482", - "GSE15745-GPL6104_PFC0510", + "482", + "GSE15745-GPL6104_PFC0510", "GSE15745 NIH Human Brain Prefrontal Cortex ILM humanRef-8 v2.0 (May10) RankInv" ] - ], + ], "Temporal Cerebral Wall mRNA": [ [ - "483", - "GSE15745-GPL6104_TC0510", + "483", + "GSE15745-GPL6104_TC0510", "GSE15745 NIH Human Brain Temporal Cerebral ILM humanRef-8 v2.0 (May10) RankInv" ] ] - }, + }, "CANDLE": { "Newborn Cord Blood mRNA": [ [ - "324", - "CANDLE_NB_0711", + "324", + "CANDLE_NB_0711", "CANDLE Newborn Cord ILMv6.3 (Jun11) QUANT" ] - ], + ], "Phenotypes": [ [ - "634", - "CANDLEPublish", + "634", + "CANDLEPublish", "CANDLE Published Phenotypes" ] ] - }, + }, "CEPH-2004": { "Lymphoblast B-cell mRNA": [ [ - "241", - "UT_CEPH_RankInv0909", + "241", + "UT_CEPH_RankInv0909", "UTHSC CEPH B-cells Illumina (Sep09) RankInv" - ], + ], [ - "215", - "Human_1008", + "215", + "Human_1008", "Monks CEPH B-cells Agilent (Dec04) Log10Ratio" ] ] - }, + }, "GTEx": { "Adipose tissue, subcutaneous mRNA": [ [ - "580", - "GTEx_log2_Subcu_0314", + "580", + "GTEx_log2_Subcu_0314", "GTEx Human Subcutaneous (Mar14) RPKM Log2" - ], + ], [ - "530", - "GTEx_Subcu_0414", + "530", + "GTEx_Subcu_0414", "GTEx Human Subcutaneous (Apr14) RPKM" ] - ], + ], "Adipose tissue, visceral mRNA": [ [ - "587", - "GTEx_log2_Visce_0314", + "587", + "GTEx_log2_Visce_0314", "GTEx Human Visceral (Mar14) RPKM Log2" - ], + ], [ - "537", - "GTEx_Visce_0414", + "537", + "GTEx_Visce_0414", "GTEx Human Visceral (Apr14) RPKM" ] - ], + ], "Adrenal Gland mRNA": [ [ - "545", - "GTEx_log2_Adren_0314", + "545", + "GTEx_log2_Adren_0314", "GTEx Human Adrenal Gland (Mar14) RPKM Log2" - ], + ], [ - "495", - "GTEx_Adren_0414", + "495", + "GTEx_Adren_0414", "GTEx Human Adrenal Gland (Apr14) RPKM" ] - ], + ], "Amygdala mRNA": [ [ - "542", - "GTEx_log2_AMY_0314", + "542", + "GTEx_log2_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM Log2" - ], + ], [ - "492", - "GTEx_AMY_0314", + "492", + "GTEx_AMY_0314", "GTEx Human Amygdala (Mar14) RPKM" ] - ], + ], "Anterior Cingulate Cortex mRNA": [ [ - "546", - "GTEx_log2_Anter_0314", + "546", + "GTEx_log2_Anter_0314", "GTEx Human Anterior Cingulate Cortex (Mar14) RPKM Log2" - ], + ], [ - "496", - "GTEx_Anter_0414", + "496", + "GTEx_Anter_0414", "GTEx Human Anterior Cingulate Cortex (Apr14) RPKM" ] - ], + ], "Aorta mRNA": [ [ - "547", - "GTEx_log2_Aorta_0314", + "547", + "GTEx_log2_Aorta_0314", "GTEx Human Aorta (Mar14) RPKM Log2" - ], + ], [ - "497", - "GTEx_Aorta_0414", + "497", + "GTEx_Aorta_0414", "GTEx Human Aorta (Apr14) RPKM" ] - ], + ], "Blood, Cells - EBV-Transformed Lymphocytes mRNA": [ [ - "548", - "GTEx_log2_Blood_0314", + "548", + "GTEx_log2_Blood_0314", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" - ], + ], [ - "498", - "GTEx_Blood_0414", + "498", + "GTEx_Blood_0414", "GTEx Human Blood, Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] - ], + ], "Breast - Mammary Tissue mRNA": [ [ - "549", - "GTEx_log2_Breas_0314", + "549", + "GTEx_log2_Breas_0314", "GTEx Human Breast - Mammary Tissue (Mar14) RPKM Log2" - ], + ], [ - "499", - "GTEx_Breas_0414", + "499", + "GTEx_Breas_0414", "GTEx Human Breast - Mammary Tissue (Apr14) RPKM" ] - ], + ], "Caudate mRNA": [ [ - "550", - "GTEx_log2_Cauda_0314", + "550", + "GTEx_log2_Cauda_0314", "GTEx Human Caudate (Mar14) RPKM Log2" - ], + ], [ - "500", - "GTEx_Cauda_0414", + "500", + "GTEx_Cauda_0414", "GTEx Human Caudate (Apr14) RPKM" ] - ], + ], "Cells - EBV-Transformed Lymphocytes mRNA": [ [ - "551", - "GTEx_log2_CellsEBV_0314", + "551", + "GTEx_log2_CellsEBV_0314", "GTEx Human Cells - EBV-Transformed Lymphocytes (Mar14) RPKM Log2" - ], + ], [ - "501", - "GTEx_CellsEBV_0414", + "501", + "GTEx_CellsEBV_0414", "GTEx Human Cells - EBV-Transformed Lymphocytes (Apr14) RPKM" ] - ], + ], "Cells - Leukemia Cell Line (CML) mRNA": [ [ - "552", - "GTEx_log2_CellsLe_0314", + "552", + "GTEx_log2_CellsLe_0314", "GTEx Human Cells - Leukemia Cell Line (CML) (Mar14) RPKM Log2" - ], + ], [ - "502", - "GTEx_CellsLe_0414", + "502", + "GTEx_CellsLe_0414", "GTEx Human Cells - Leukemia Cell Line (CML) (Apr14) RPKM" ] - ], + ], "Cells - Transformed Fibroblasts mRNA": [ [ - "553", - "GTEx_log2_CellsTr_0314", + "553", + "GTEx_log2_CellsTr_0314", "GTEx Human Cells - Transformed Fibroblasts (Mar14) RPKM Log2" - ], + ], [ - "503", - "GTEx_CellsTr_0414", + "503", + "GTEx_CellsTr_0414", "GTEx Human Cells - Transformed Fibroblasts (Apr14) RPKM" ] - ], + ], "Cerebellar Cortex mRNA": [ [ - "554", - "GTEx_log2_CerebC_0314", + "554", + "GTEx_log2_CerebC_0314", "GTEx Human Cerebellar Cortex (Mar14) RPKM Log2" - ], + ], [ - "504", - "GTEx_CerebC_0414", + "504", + "GTEx_CerebC_0414", "GTEx Human Cerebellar Cortex (Apr14) RPKM" ] - ], + ], "Cerebellar Hemisphere mRNA": [ [ - "555", - "GTEx_log2_CerebH_0314", + "555", + "GTEx_log2_CerebH_0314", "GTEx Human Cerebellar Hemisphere (Mar14) RPKM Log2" - ], + ], [ - "505", - "GTEx_CerebH_0414", + "505", + "GTEx_CerebH_0414", "GTEx Human Cerebellar Hemisphere (Apr14) RPKM" ] - ], + ], "Cerebellum mRNA": [ [ - "543", - "GTEx_log2_CER_0314", + "543", + "GTEx_log2_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM Log2" - ], + ], [ - "493", - "GTEx_CER_0314", + "493", + "GTEx_CER_0314", "GTEx Human Cerebellum (Mar14) RPKM" ] - ], + ], "Colon - Transverse mRNA": [ [ - "556", - "GTEx_log2_Colon_0314", + "556", + "GTEx_log2_Colon_0314", "GTEx Human Colon - Transverse (Mar14) RPKM Log2" - ], + ], [ - "506", - "GTEx_Colon_0414", + "506", + "GTEx_Colon_0414", "GTEx Human Colon - Transverse (Apr14) RPKM" ] - ], + ], "Coronary mRNA": [ [ - "557", - "GTEx_log2_Coron_0314", + "557", + "GTEx_log2_Coron_0314", "GTEx Human Coronary (Mar14) RPKM Log2" - ], + ], [ - "507", - "GTEx_Coron_0414", + "507", + "GTEx_Coron_0414", "GTEx Human Coronary (Apr14) RPKM" ] - ], + ], "Esophagus - Mucosa mRNA": [ [ - "558", - "GTEx_log2_EsophMuc_0314", + "558", + "GTEx_log2_EsophMuc_0314", "GTEx Human Esophagus - Mucosa (Mar14) RPKM Log2" - ], + ], [ - "508", - "GTEx_EsophMuc_0414", + "508", + "GTEx_EsophMuc_0414", "GTEx Human Esophagus - Mucosa (Apr14) RPKM" ] - ], + ], "Esophagus - Muscularis mRNA": [ [ - "559", - "GTEx_log2_EsophMus_0314", + "559", + "GTEx_log2_EsophMus_0314", "GTEx Human Esophagus - Muscularis (Mar14) RPKM Log2" - ], + ], [ - "509", - "GTEx_EsophMus_0414", + "509", + "GTEx_EsophMus_0414", "GTEx Human Esophagus - Muscularis (Apr14) RPKM" ] - ], + ], "Fallopian Tube mRNA": [ [ - "560", - "GTEx_log2_Fallo_0314", + "560", + "GTEx_log2_Fallo_0314", "GTEx Human Fallopian Tube (Mar14) RPKM Log2" - ], + ], [ - "510", - "GTEx_Fallo_0414", + "510", + "GTEx_Fallo_0414", "GTEx Human Fallopian Tube (Apr14) RPKM" ] - ], + ], "Frontal Cortex mRNA": [ [ - "561", - "GTEx_log2_Front_0314", + "561", + "GTEx_log2_Front_0314", "GTEx Human Frontal Cortex (Mar14) RPKM Log2" - ], + ], [ - "511", - "GTEx_Front_0414", + "511", + "GTEx_Front_0414", "GTEx Human Frontal Cortex (Apr14) RPKM" ] - ], + ], "Heart - Atrial Appendage mRNA": [ [ - "562", - "GTEx_log2_HeartAt_0314", + "562", + "GTEx_log2_HeartAt_0314", "GTEx Human Heart - Atrial Appendage (Mar14) RPKM Log2" - ], + ], [ - "512", - "GTEx_HeartAt_0414", + "512", + "GTEx_HeartAt_0414", "GTEx Human Heart - Atrial Appendage (Apr14) RPKM" ] - ], + ], "Heart - Left Ventricle mRNA": [ [ - "563", - "GTEx_log2_HeartLV_0314", + "563", + "GTEx_log2_HeartLV_0314", "GTEx Human Heart - Left Ventricle (Mar14) RPKM Log2" - ], + ], [ - "513", - "GTEx_HeartLV_0414", + "513", + "GTEx_HeartLV_0414", "GTEx Human Heart - Left Ventricle (Apr14) RPKM" ] - ], + ], "Hippocampus mRNA": [ [ - "544", - "GTEx_log2_HIP_0314", + "544", + "GTEx_log2_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM Log2" - ], + ], [ - "494", - "GTEx_HIP_0314", + "494", + "GTEx_HIP_0314", "GTEx Human Hippocampus (Mar14) RPKM" ] - ], + ], "Hypothalamus mRNA": [ [ - "564", - "GTEx_log2_Hypot_0314", + "564", + "GTEx_log2_Hypot_0314", "GTEx Human Hypothalamus (Mar14) RPKM Log2" - ], + ], [ - "514", - "GTEx_Hypot_0414", + "514", + "GTEx_Hypot_0414", "GTEx Human Hypothalamus (Apr14) RPKM" ] - ], + ], "Kidney mRNA": [ [ - "565", - "GTEx_log2_Kidne_0314", + "565", + "GTEx_log2_Kidne_0314", "GTEx Human Kidney (Mar14) RPKM Log2" - ], + ], [ - "515", - "GTEx_Kidne_0414", + "515", + "GTEx_Kidne_0414", "GTEx Human Kidney (Apr14) RPKM" ] - ], + ], "Liver mRNA": [ [ - "566", - "GTEx_log2_Liver_0314", + "566", + "GTEx_log2_Liver_0314", "GTEx Human Liver (Mar14) RPKM Log2" - ], + ], [ - "516", - "GTEx_Liver_0414", + "516", + "GTEx_Liver_0414", "GTEx Human Liver (Apr14) RPKM" ] - ], + ], "Lung mRNA": [ [ - "567", - "GTEx_log2_Lung_0314", + "567", + "GTEx_log2_Lung_0314", "GTEx Human Lung (Mar14) RPKM Log2" - ], + ], [ - "517", - "GTEx_Lung _0414", + "517", + "GTEx_Lung _0414", "GTEx Human Lung (Apr14) RPKM" ] - ], + ], "Muscle mRNA": [ [ - "568", - "GTEx_log2_Muscle_0314", + "568", + "GTEx_log2_Muscle_0314", "GTEx Human Muscle (Mar14) RPKM Log2" - ], + ], [ - "518", - "GTEx_Muscl_0414", + "518", + "GTEx_Muscl_0414", "GTEx Human Muscle (Apr14) RPKM" ] - ], + ], "Nerve - Tibial mRNA": [ [ - "569", - "GTEx_log2_Nerve_0314", + "569", + "GTEx_log2_Nerve_0314", "GTEx Human Nerve - Tibial (Mar14) RPKM Log2" - ], + ], [ - "519", - "GTEx_Nerve_0414", + "519", + "GTEx_Nerve_0414", "GTEx Human Nerve - Tibial (Apr14) RPKM" ] - ], + ], "Nucleus Accumbens mRNA": [ [ - "570", - "GTEx_log2_Nucle_0314", + "570", + "GTEx_log2_Nucle_0314", "GTEx Human Nucleus Accumbens (Mar14) RPKM Log2" - ], + ], [ - "520", - "GTEx_Nucle_0414", + "520", + "GTEx_Nucle_0414", "GTEx Human Nucleus Accumbens (Apr14) RPKM" ] - ], + ], "Ovary mRNA": [ [ - "571", - "GTEx_log2_Ovary_0314", + "571", + "GTEx_log2_Ovary_0314", "GTEx Human Ovary (Mar14) RPKM Log2" - ], + ], [ - "521", - "GTEx_Ovary_0414", + "521", + "GTEx_Ovary_0414", "GTEx Human Ovary (Apr14) RPKM" ] - ], + ], "Pancreas mRNA": [ [ - "572", - "GTEx_log2_Pancr_0314", + "572", + "GTEx_log2_Pancr_0314", "GTEx Human Pancreas (Mar14) RPKM Log2" - ], + ], [ - "522", - "GTEx_Pancr_0414", + "522", + "GTEx_Pancr_0414", "GTEx Human Pancreas (Apr14) RPKM" ] - ], + ], "Pituitary Gland mRNA": [ [ - "573", - "GTEx_log2_Pitui_0314", + "573", + "GTEx_log2_Pitui_0314", "GTEx Human Pituitary (Mar14) RPKM Log2" - ], + ], [ - "523", - "GTEx_Pitui_0414", + "523", + "GTEx_Pitui_0414", "GTEx Human Pituitary (Apr14) RPKM" ] - ], + ], "Prostate mRNA": [ [ - "574", - "GTEx_log2_Prost_0314", + "574", + "GTEx_log2_Prost_0314", "GTEx Human Prostate (Mar14) RPKM Log2" - ], + ], [ - "524", - "GTEx_Prost_0414", + "524", + "GTEx_Prost_0414", "GTEx Human Prostate (Apr14) RPKM" ] - ], + ], "Putamen mRNA": [ [ - "575", - "GTEx_log2_Putam_0314", + "575", + "GTEx_log2_Putam_0314", "GTEx Human Putamen (Mar14) RPKM Log2" - ], + ], [ - "525", - "GTEx_Putam_0414", + "525", + "GTEx_Putam_0414", "GTEx Human Putamen (Apr14) RPKM" ] - ], + ], "Skin - Not Sun Exposed (Suprapubic) mRNA": [ [ - "576", - "GTEx_log2_SkinN_0314", + "576", + "GTEx_log2_SkinN_0314", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Mar14) RPKM Log2" - ], + ], [ - "526", - "GTEx_SkinN_0414", + "526", + "GTEx_SkinN_0414", "GTEx Human Skin-Not Sun Exposed (Suprapubic) (Apr14) RPKM" ] - ], + ], "Skin - Sun Exposed (Lower leg) mRNA": [ [ - "577", - "GTEx_log2_SkinE_0314", + "577", + "GTEx_log2_SkinE_0314", "GTEx Human Skin-Sun Exposed (Lower leg) (Mar14) RPKM Log2" - ], + ], [ - "527", - "GTEx_SkinE_0414", + "527", + "GTEx_SkinE_0414", "GTEx Human Skin-Sun Exposed (Lower leg) (Apr14) RPKM" ] - ], + ], "Spinal Cord mRNA": [ [ - "578", - "GTEx_log2_Spina_0314", + "578", + "GTEx_log2_Spina_0314", "GTEx Human Spinal Cord (Mar14) RPKM Log2" - ], + ], [ - "528", - "GTEx_Spina_0414", + "528", + "GTEx_Spina_0414", "GTEx Human Spinal Cord (Apr14) RPKM" ] - ], + ], "Stomach mRNA": [ [ - "579", - "GTEx_log2_Stoma_0314", + "579", + "GTEx_log2_Stoma_0314", "GTEx Human Stomach (Mar14) RPKM Log2" - ], + ], [ - "529", - "GTEx_Stoma_0414", + "529", + "GTEx_Stoma_0414", "GTEx Human Stomach (Apr14) RPKM" ] - ], + ], "Substantia Nigra mRNA": [ [ - "581", - "GTEx_log2_Subst_0314", + "581", + "GTEx_log2_Subst_0314", "GTEx Human Substantia Nigra (Mar14) RPKM Log2" - ], + ], [ - "531", - "GTEx_Subst_0414", + "531", + "GTEx_Subst_0414", "GTEx Human Substantia Nigra (Apr14) RPKM" ] - ], + ], "Testis mRNA": [ [ - "582", - "GTEx_log2_Testi_0314", + "582", + "GTEx_log2_Testi_0314", "GTEx Human Testis (Mar14) RPKM Log2" - ], + ], [ - "532", - "GTEx_Testi_0414", + "532", + "GTEx_Testi_0414", "GTEx Human Testis (Apr14) RPKM" ] - ], + ], "Thyroid mRNA": [ [ - "583", - "GTEx_log2_Thyro_0314", + "583", + "GTEx_log2_Thyro_0314", "GTEx Human Thyroid (Mar14) RPKM Log2" - ], + ], [ - "533", - "GTEx_Thyro_0414", + "533", + "GTEx_Thyro_0414", "GTEx Human Thyroid (Apr14) RPKM" ] - ], + ], "Tibial mRNA": [ [ - "584", - "GTEx_log2_Tibial_0314", + "584", + "GTEx_log2_Tibial_0314", "GTEx Human Tibial (Mar14) RPKM Log2" - ], + ], [ - "534", - "GTEx_Tibia_0414", + "534", + "GTEx_Tibia_0414", "GTEx Human Tibial (Apr14) RPKM" ] - ], + ], "Uterus mRNA": [ [ - "585", - "GTEx_log2_Uterus_0314", + "585", + "GTEx_log2_Uterus_0314", "GTEx Human Uterus (Mar14) RPKM Log2" - ], + ], [ - "535", - "GTEx_Uteru_0414", + "535", + "GTEx_Uteru_0414", "GTEx Human Uterus (Apr14) RPKM" ] - ], + ], "Vagina mRNA": [ [ - "586", - "GTEx_log2_Vagin_0314", + "586", + "GTEx_log2_Vagin_0314", "GTEx Human Vagina (Mar14) RPKM Log2" - ], + ], [ - "536", - "GTEx_Vagin_0414", + "536", + "GTEx_Vagin_0414", "GTEx Human Vagina (Apr14) RPKM" ] - ], + ], "Whole Blood mRNA": [ [ - "588", - "GTEx_log2_WholeB_0314", + "588", + "GTEx_log2_WholeB_0314", "GTEx Human Whole Blood (Mar14) RPKM Log2" - ], + ], [ - "538", - "GTEx_Whole_0414", + "538", + "GTEx_Whole_0414", "GTEx Human Whole Blood (Apr14) RPKM" ] ] - }, + }, "GTEx_v5": { "Adipose tissue, subcutaneous mRNA": [ [ - "718", - "GTEXv5_AdipSub_0915", + "718", + "GTEXv5_AdipSub_0915", "GTEXv5 Human Adipose Subcutaneous RefSeq (Sep15) RPKM log2" ] - ], + ], "Adipose tissue, visceral mRNA": [ [ - "719", - "GTEXv5_AdiVis_0915", + "719", + "GTEXv5_AdiVis_0915", "GTEXv5 Human Adipose Visceral Omentum RefSeq (Sep15) RPKM log2" ] - ], + ], "Adrenal Gland mRNA": [ [ - "720", - "GTEXv5_AdrGla_0915", + "720", + "GTEXv5_AdrGla_0915", "GTEXv5 Human Adrenal Gland RefSeq (Sep15) RPKM log2" ] - ], + ], "Amygdala mRNA": [ [ - "725", - "GTEXv5_Amy_0915", + "725", + "GTEXv5_Amy_0915", "GTEXv5 Human Brain Amygdala RefSeq (Sep15) RPKM log2" ] - ], + ], "Anterior Cingulate Cortex mRNA": [ [ - "726", - "GTEXv5_AntCtx_0915", + "726", + "GTEXv5_AntCtx_0915", "GTEXv5 Human Brain Anterior Cingulate Cortex BA24 RefSeq (Sep15) RPKM log2" ] - ], + ], "Aorta mRNA": [ [ - "721", - "GTEXv5_ArtAor_0915", + "721", + "GTEXv5_ArtAor_0915", "GTEXv5 Human Artery Aorta RefSeq (Sep15) RPKM log2" ] - ], + ], "Bladder mRNA": [ [ - "724", - "GTEXv5_Bla_0915", + "724", + "GTEXv5_Bla_0915", "GTEXv5 Human Bladder RefSeq (Sep15) RPKM log2" ] - ], + ], "Bone Marrow mRNA": [ [ - "740", - "GTEXv5_BM_0915", + "740", + "GTEXv5_BM_0915", "GTEXv5 Human Cells-Leukemia Cell Line CML RefSeq (Sep15) RPKM log2" ] - ], + ], "Breast - Mammary Tissue mRNA": [ [ - "738", - "GTEXv5_BrMa_0915", + "738", + "GTEXv5_BrMa_0915", "GTEXv5 Human Breast Mammary Tissue RefSeq (Sep15) RPKM log2" ] - ], + ], "Caudate mRNA": [ [ - "727", - "GTEXv5_BrCa_0915", + "727", + "GTEXv5_BrCa_0915", "GTEXv5 Human Brain Caudate Basal Ganglia RefSeq (Sep15) RPKM log2" ] - ], + ], "Cells - EBV-Transformed Lymphocytes mRNA": [ [ - "739", - "GTEXv5_EBV_0915", + "739", + "GTEXv5_EBV_0915", "GTEXv5 Human Cells-EBV-Transformed Lymphocytes RefSeq (Sep15) RPKM log2" ] - ], + ], "Cells - Transformed Fibroblasts mRNA": [ [ - "741", - "GTEXv5_CTF_0915", + "741", + "GTEXv5_CTF_0915", "GTEXv5 Human Cells-Transformed Fibroblasts RefSeq (Sep15) RPKM log2" ] - ], + ], "Cerebellar Cortex mRNA": [ [ - "730", - "GTEXv5_BrCtx_0915", + "730", + "GTEXv5_BrCtx_0915", "GTEXv5 Human Brain Cortex RefSeq (Sep15) RPKM log2" ] - ], + ], "Cerebellar Hemisphere mRNA": [ [ - "728", - "GTEXv5_CerH_0915", + "728", + "GTEXv5_CerH_0915", "GTEXv5 Human Brain Cerebellar Hemisphere RefSeq (Sep15) RPKM log2" ] - ], + ], "Cerebellum mRNA": [ [ - "729", - "GTEXv5_BrCe_0915", + "729", + "GTEXv5_BrCe_0915", "GTEXv5 Human Brain Cerebellum RefSeq (Sep15) RPKM log2" ] - ], + ], "Cervix mRNA": [ [ - "742", - "GTEXv5_CerEct_0915", + "742", + "GTEXv5_CerEct_0915", "GTEXv5 Human Cervix-Ectocervix RefSeq (Sep15) RPKM log2" ] - ], + ], "Colon - Sigmoid mRNA": [ [ - "743", - "GTEXv5_ColSig_0915", + "743", + "GTEXv5_ColSig_0915", "GTEXv5 Human Colon-Sigmoid RefSeq (Sep15) RPKM log2" ] - ], + ], "Colon - Transverse mRNA": [ [ - "744", - "GTEXv5_ColTra_0915", + "744", + "GTEXv5_ColTra_0915", "GTEXv5 Human Colon-Transverse RefSeq (Sep15) RPKM log2" ] - ], + ], "Coronary mRNA": [ [ - "722", - "GTEXv5_ArtCor_0915", + "722", + "GTEXv5_ArtCor_0915", "GTEXv5 Human Artery Coronary RefSeq (Sep15) RPKM log2" ] - ], + ], "Esophagus - Gastroesophageal mRNA": [ [ - "745", - "GTEXv5_GastJun_0915", + "745", + "GTEXv5_GastJun_0915", "GTEXv5 Human Esophagus - Gastroesophageal Junction RefSeq (Sep15) RPKM log2" ] - ], + ], "Esophagus - Mucosa mRNA": [ [ - "746", - "GTEXv5_EsoMu_0915", + "746", + "GTEXv5_EsoMu_0915", "GTEXv5 Human Esophagus - Mucosa RefSeq (Sep15) RPKM log2" ] - ], + ], "Esophagus - Muscularis mRNA": [ [ - "747", - "GTEXv5_EsoMus_0915", + "747", + "GTEXv5_EsoMus_0915", "GTEXv5 Human Esophagus - Muscularis RefSeq (Sep15) RPKM log2" ] - ], + ], "Fallopian Tube mRNA": [ [ - "748", - "GTEXv5_Fatu_0915", + "748", + "GTEXv5_Fatu_0915", "GTEXv5 Human Fallopian Tube RefSeq (Sep15) RPKM log2" ] - ], + ], "Frontal Cortex mRNA": [ [ - "731", - "GTEXv5_BrFr_0915", + "731", + "GTEXv5_BrFr_0915", "GTEXv5 Human Brain Frontal Cortex BA9 RefSeq (Sep15) RPKM log2" ] - ], + ], "Heart - Atrial Appendage mRNA": [ [ - "749", - "GTEXv5_HAA_0915", + "749", + "GTEXv5_HAA_0915", "GTEXv5 Human Heart - Atrial Appendage RefSeq (Sep15) RPKM log2" ] - ], + ], "Heart - Left Ventricle mRNA": [ [ - "750", - "GTEXv5_LV_0915", + "750", + "GTEXv5_LV_0915", "GTEXv5 Human Heart - Left Ventricle RefSeq (Sep15) RPKM log2" ] - ], + ], "Hippocampus mRNA": [ [ - "732", - "GTEXv5_Hip_0915", + "732", + "GTEXv5_Hip_0915", "GTEXv5 Human Brain Hippocampus RefSeq (Sep15) RPKM log2" ] - ], + ], "Hypothalamus mRNA": [ [ - "733", - "GTEXv5_Hiptha_0915", + "733", + "GTEXv5_Hiptha_0915", "GTEXv5 Human Brain Hypothalamus RefSeq (Sep15) RPKM log2" ] - ], + ], "Kidney mRNA": [ [ - "751", - "GTEXv5_Kidn_0915", + "751", + "GTEXv5_Kidn_0915", "GTEXv5 Human Kidney - Cortex RefSeq (Sep15) RPKM log2" ] - ], + ], "Liver mRNA": [ [ - "752", - "GTEXv5_Liv_0915", + "752", + "GTEXv5_Liv_0915", "GTEXv5 Human Liver RefSeq (Sep15) RPKM log2" ] - ], + ], "Lung mRNA": [ [ - "753", - "GTEXv5_Lung_0915", + "753", + "GTEXv5_Lung_0915", "GTEXv5 Human Lung RefSeq (Sep15) RPKM log2" ] - ], + ], "Muscle mRNA": [ [ - "754", - "GTEXv5_MuSk_0915", + "754", + "GTEXv5_MuSk_0915", "GTEXv5 Human Muscle - Skeletal RefSeq (Sep15) RPKM log2" ] - ], + ], "Nerve - Tibial mRNA": [ [ - "755", - "GTEXv5_Tib_0915", + "755", + "GTEXv5_Tib_0915", "GTEXv5 Human Nerve - Tibial RefSeq (Sep15) RPKM log2" ] - ], + ], "Nucleus Accumbens mRNA": [ [ - "734", - "GTEXv5_NuAcc_0915", + "734", + "GTEXv5_NuAcc_0915", "GTEXv5 Human Brain Nucleus Accumbens Basal Ganglia RefSeq (Sep15) RPKM log2" ] - ], + ], "Ovary mRNA": [ [ - "756", - "GTEXv5_Ov_0915", + "756", + "GTEXv5_Ov_0915", "GTEXv5 Human Ovary RefSeq (Sep15) RPKM log2" ] - ], + ], "Pancreas mRNA": [ [ - "757", - "GTEXv5_Panc_0915", + "757", + "GTEXv5_Panc_0915", "GTEXv5 Human Pancreas RefSeq (Sep15) RPKM log2" ] - ], + ], "Phenotypes": [ [ - "None", - "GTEx_v5Publish", + "None", + "GTEx_v5Publish", "GTEx_v5 Phenotypes" ] - ], + ], "Pituitary Gland mRNA": [ [ - "758", - "GTEXv5_Pit_0915", + "758", + "GTEXv5_Pit_0915", "GTEXv5 Human Pituitary RefSeq (Sep15) RPKM log2" ] - ], + ], "Prostate mRNA": [ [ - "759", - "GTEXv5_Prost_0915", + "759", + "GTEXv5_Prost_0915", "GTEXv5 Human Prostate RefSeq (Sep15) RPKM log2" ] - ], + ], "Putamen mRNA": [ [ - "735", - "GTEXv5_PutB_0915", + "735", + "GTEXv5_PutB_0915", "GTEXv5 Human Brain Putamen Basal Ganglia RefSeq (Sep15) RPKM log2" ] - ], + ], "Salivary Gland mRNA": [ [ - "760", - "GTEXv5_SalGl_0915", + "760", + "GTEXv5_SalGl_0915", "GTEXv5 Human Salivary Gland Minor RefSeq (Sep15) RPKM log2" ] - ], + ], "Skin - Not Sun Exposed (Suprapubic) mRNA": [ [ - "761", - "GTEXv5_SkN_0915", + "761", + "GTEXv5_SkN_0915", "GTEXv5 Human Skin-Not Sun Exposed-Suprapubic RefSeq (Sep15) RPKM log2" ] - ], + ], "Skin - Sun Exposed (Lower leg) mRNA": [ [ - "762", - "GTEXv5_SkS_0915", + "762", + "GTEXv5_SkS_0915", "GTEXv5 Human Skin-Sun Exposed-Lower Leg RefSeq (Sep15) RPKM log2" ] - ], + ], "Small Intestine - Terminal Ileum mRNA": [ [ - "763", - "GTEXv5_SInt_0915", + "763", + "GTEXv5_SInt_0915", "GTEXv5 Human Small Intestine - Terminal Ileum RefSeq (Sep15) RPKM log2" ] - ], + ], "Spinal Cord mRNA": [ [ - "736", - "GTEXv5_SpCo_0915", + "736", + "GTEXv5_SpCo_0915", "GTEXv5 Human Brain Spinal Cord Cervical C-1 RefSeq (Sep15) RPKM log2" ] - ], + ], "Spleen mRNA": [ [ - "764", - "GTEXv5_Sple_0915", + "764", + "GTEXv5_Sple_0915", "GTEXv5 Human Spleen RefSeq (Sep15) RPKM log2" ] - ], + ], "Stomach mRNA": [ [ - "765", - "GTEXv5_Sto_0915", + "765", + "GTEXv5_Sto_0915", "GTEXv5 Human Stomach RefSeq (Sep15) RPKM log2" ] - ], + ], "Substantia Nigra mRNA": [ [ - "737", - "GTEXv5_SubN_0915", + "737", + "GTEXv5_SubN_0915", "GTEXv5 Human Brain Substantia Nigra RefSeq (Sep15) RPKM log2" ] - ], + ], "Testis mRNA": [ [ - "766", - "GTEXv5_Test_0915", + "766", + "GTEXv5_Test_0915", "GTEXv5 Human Testis RefSeq (Sep15) RPKM log2" ] - ], + ], "Thyroid mRNA": [ [ - "767", - "GTEXv5_Thy_0915", + "767", + "GTEXv5_Thy_0915", "GTEXv5 Human Thyroid RefSeq (Sep15) RPKM log2" ] - ], + ], "Tibial mRNA": [ [ - "723", - "GTEXv5_ArtTib_0915", + "723", + "GTEXv5_ArtTib_0915", "GTEXv5 Human Artery Tibial RefSeq (Sep15) RPKM log2" ] - ], + ], "Uterus mRNA": [ [ - "768", - "GTEXv5_Ut_0915", + "768", + "GTEXv5_Ut_0915", "GTEXv5 Human Uterus RefSeq (Sep15) RPKM log2" ] - ], + ], "Vagina mRNA": [ [ - "769", - "GTEXv5_Vag_0915", + "769", + "GTEXv5_Vag_0915", "GTEXv5 Human Vagina RefSeq (Sep15) RPKM log2" ] - ], + ], "Whole Blood mRNA": [ [ - "770", - "GTEXv5_Wbl_0915", + "770", + "GTEXv5_Wbl_0915", "GTEXv5 Human Whole Blood RefSeq (Sep15) RPKM log2" ] ] - }, + }, "HB": { "Cerebellum mRNA": [ [ - "326", - "HBTRC-MLC_0611", + "326", + "HBTRC-MLC_0611", "HBTRC-MLC Human Cerebellum Agilent (Jun11) mlratio" - ], + ], [ - "361", - "HBTRC-MLC_N_0611", + "361", + "HBTRC-MLC_N_0611", "HBTRC-MLC Human Cerebellum Agilent Normal (Jun11) mlratio" - ], + ], [ - "362", - "HBTRC-MLC_AD_0611", + "362", + "HBTRC-MLC_AD_0611", "HBTRC-MLC Human Cerebellum Agilent AD (Jun11) mlratio" - ], + ], [ - "363", - "HBTRC-MLC_HD_0611", + "363", + "HBTRC-MLC_HD_0611", "HBTRC-MLC Human Cerebellum Agilent HD (Jun11) mlratio" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "328", - "HBTRC-MLPFC_0611", + "328", + "HBTRC-MLPFC_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent (Jun11) mlratio" - ], + ], [ - "367", - "HBTRC-MLPFC_N_0611", + "367", + "HBTRC-MLPFC_N_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent Normal (Jun11) mlratio" - ], + ], [ - "368", - "HBTRC-MLPFC_AD_0611", + "368", + "HBTRC-MLPFC_AD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent AD (Jun11) mlratio" - ], + ], [ - "369", - "HBTRC-MLPFC_HD_0611", + "369", + "HBTRC-MLPFC_HD_0611", "HBTRC-MLC Human Prefrontal Cortex Agilent HD (Jun11) mlratio" ] - ], + ], "Primary Visual Cortex mRNA": [ [ - "327", - "HBTRC-MLVC_0611", + "327", + "HBTRC-MLVC_0611", "HBTRC-MLC Human Visual Cortex Agilent (Jun11) mlratio" - ], + ], [ - "364", - "HBTRC-MLVC_N_0611", + "364", + "HBTRC-MLVC_N_0611", "HBTRC-MLC Human Visual Cortex Agilent Normal (Jun11) mlratio" - ], + ], [ - "365", - "HBTRC-MLVC_AD_0611", + "365", + "HBTRC-MLVC_AD_0611", "HBTRC-MLC Human Visual Cortex Agilent AD (Jun11) mlratio" - ], + ], [ - "366", - "HBTRC-MLVC_HD_0611", + "366", + "HBTRC-MLVC_HD_0611", "HBTRC-MLC Human Visual Cortex Agilent HD (Jun11) mlratio" ] ] - }, + }, "HCP": { "Phenotypes": [ [ - "None", - "HCPPublish", + "None", + "HCPPublish", "HCP Private Phenotypes" ] ] - }, + }, "HLC": { "Liver mRNA": [ [ - "320", - "HLC_0311", + "320", + "HLC_0311", "GSE9588 Human Liver Normal (Mar11) Both Sexes" - ], + ], [ - "384", - "HLCF_0311", + "384", + "HLCF_0311", "GSE9588 Human Liver Normal (Mar11) Females" - ], + ], [ - "383", - "HLCM_0311", + "383", + "HLCM_0311", "GSE9588 Human Liver Normal (Mar11) Males" ] - ], + ], "Phenotypes": [ [ - "635", - "HLCPublish", + "635", + "HLCPublish", "HLC Published Phenotypes" ] ] - }, + }, "HLT": { "Lung mRNA": [ [ - "455", - "GSE23546HLT0613", + "455", + "GSE23546HLT0613", "Super Series GSE23546 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" - ], + ], [ - "454", - "GRNG-GSE23545HLT0613", + "454", + "GRNG-GSE23545HLT0613", "GRNG/GSE23545 Whole-Genome GXD Non-Tumorous Human Lung Tissues Affy HuRSTA array (Jun11) RMA" ] ] - }, + }, "HSB": { "Amygdala mRNA": [ [ - "330", - "KIN_YSM_AMY_0711", + "330", + "KIN_YSM_AMY_0711", "GN330 Human Amygdala Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Cerebellar Cortex mRNA": [ [ - "331", - "KIN_YSM_CBC_0711", + "331", + "KIN_YSM_CBC_0711", "Human Cerebellar Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Dorsolateral Prefrontal Cortex mRNA": [ [ - "333", - "KIN_YSM_DFC_0711", + "333", + "KIN_YSM_DFC_0711", "Human Dorsolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Hippocampus mRNA": [ [ - "337", - "KIN_YSM_HIP_0711", + "337", + "KIN_YSM_HIP_0711", "Human Hippocampus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Inferior Temporal Cortex mRNA": [ [ - "339", - "KIN_YSM_ITC_0711", + "339", + "KIN_YSM_ITC_0711", "Human Inferior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Medial Prefrontal Cortex mRNA": [ [ - "343", - "KIN_YSM_MFC_0711", + "343", + "KIN_YSM_MFC_0711", "Human Medial Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Mediodorsal Nucleus of Thalamus mRNA": [ [ - "342", - "KIN_YSM_MD_0711", + "342", + "KIN_YSM_MD_0711", "Human Mediodorsal Nucleus of Thalamus Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Orbital Prefrontal Cortex mRNA": [ [ - "347", - "KIN_YSM_OFC_0711", + "347", + "KIN_YSM_OFC_0711", "Human Orbital Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Phenotypes": [ [ - "None", - "HSBPublish", + "None", + "HSBPublish", "HSB Published Phenotypes" ] - ], + ], "Posterior Inferior Parietal Cortex mRNA": [ [ - "338", - "KIN_YSM_IPC_0711", + "338", + "KIN_YSM_IPC_0711", "Human Posterior Inferior Parietal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Posterior Superior Temporal Cortex mRNA": [ [ - "350", - "KIN_YSM_STC_0711", + "350", + "KIN_YSM_STC_0711", "Human Posterior Superior Temporal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Primary Auditory (A1) Cortex mRNA": [ [ - "329", - "KIN_YSM_A1C_0711", + "329", + "KIN_YSM_A1C_0711", "Human Primary Auditory (A1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Primary Motor (M1) Cortex mRNA": [ [ - "341", - "KIN_YSM_M1C_0711", + "341", + "KIN_YSM_M1C_0711", "Human Primary Motor (M1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Primary Somatosensory (S1) Cortex mRNA": [ [ - "349", - "KIN_YSM_S1C_0711", + "349", + "KIN_YSM_S1C_0711", "Human Primary Somatosensory (S1) Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Primary Visual Cortex mRNA": [ [ - "354", - "KIN_YSM_V1C_0711", + "354", + "KIN_YSM_V1C_0711", "Human Primary Visual Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Striatum mRNA": [ [ - "351", - "KIN_YSM_STR_0711", + "351", + "KIN_YSM_STR_0711", "Human Striatum Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] - ], + ], "Ventrolateral Prefrontal Cortex mRNA": [ [ - "356", - "KIN_YSM_VFC_0711", + "356", + "KIN_YSM_VFC_0711", "Human Ventrolateral Prefrontal Cortex Affy Hu-Exon 1.0 ST (Jul11) Quantile" ] ] - }, + }, "Islets-Gerling": { "Phenotypes": [ [ - "None", - "Islets-GerlingPublish", + "None", + "Islets-GerlingPublish", "Islets-Gerling Phenotypes" ] ] - }, + }, "TIGEM-Retina-RNA-Seq": { "Phenotypes": [ [ - "None", - "TIGEM-Retina-RNA-SeqPublish", + "None", + "TIGEM-Retina-RNA-SeqPublish", "TIGEM-Retina-RNA-Seq Phenotypes" ] - ], + ], "Retina mRNA": [ [ - "802", - "TIGEM_hg38_ret_rna-seq_0916", + "802", + "TIGEM_hg38_ret_rna-seq_0916", "TIGEM Human Retina RNA-Seq (Sep16) RPKM log2" ] ] } - }, + }, "mouse": { "AIL": { "Hippocampus mRNA": [ [ - "874", - "UCSD_AIL_HIP_RNA-Seq_log2_0418", + "874", + "UCSD_AIL_HIP_RNA-Seq_log2_0418", "UCSD AIL Hippocampus (Apr18) RNA-Seq Log2" - ], + ], [ - "844", - "UCSD_AIL_HIP_RNA-Seq_0418", + "844", + "UCSD_AIL_HIP_RNA-Seq_0418", "UCSD AIL Hippocampus (Apr18) RNA-Seq" ] - ], + ], "Phenotypes": [ [ - "653", - "AILPublish", + "653", + "AILPublish", "AIL Phenotypes" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "876", - "UCSD_AIL_PFC_RNA-Seq_log2_0418", + "876", + "UCSD_AIL_PFC_RNA-Seq_log2_0418", "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq Log2" - ], + ], [ - "846", - "UCSD_AIL_PFC_RNA-Seq_0418", + "846", + "UCSD_AIL_PFC_RNA-Seq_0418", "UCSD AIL Prefrontal Cortex (Apr18) RNA-Seq" ] - ], + ], "Striatum mRNA": [ [ - "875", - "UCSD_AIL_STR_RNA-Seq_log2_0418", + "875", + "UCSD_AIL_STR_RNA-Seq_log2_0418", "UCSD AIL Striatum (Apr18) RNA-Seq Log2" - ], + ], [ - "845", - "UCSD_AIL_STR_RNA-Seq_0418", + "845", + "UCSD_AIL_STR_RNA-Seq_0418", "UCSD AIL Striatum (Apr18) RNA-Seq" ] ] - }, + }, "AIL-LGSM-F34-A": { "Phenotypes": [ [ - "655", - "AIL-LGSM-F34-APublish", + "655", + "AIL-LGSM-F34-APublish", "AIL F34-A Phenotypes" ] ] - }, + }, "AIL-LGSM-F34-F39-43-GBS": { "Phenotypes": [ [ - "654", - "AIL-LGSM-F34-F39-43-GBSPublish", + "654", + "AIL-LGSM-F34-F39-43-GBSPublish", "AIL F34-F39-43-GBS Phenotypes" ] ] - }, + }, "AIL-LGSM-F34-GBS": { "Phenotypes": [ [ - "656", - "AIL-LGSM-F34-GBSPublish", + "656", + "AIL-LGSM-F34-GBSPublish", "AIL F34-GBS Phenotypes" ] ] - }, + }, "AIL-LGSM-F39-43-GBS": { "Phenotypes": [ [ - "657", - "AIL-LGSM-F39-43-GBSPublish", + "657", + "AIL-LGSM-F39-43-GBSPublish", "AIL F39-43-GBS Phenotypes" ] ] - }, + }, "AKXD": { "Genotypes": [ [ - "611", - "AKXDGeno", + "611", + "AKXDGeno", "AKXD Genotypes" ] - ], + ], "Mammary Tumors mRNA": [ [ - "224", - "NCI_Agil_Mam_Tum_RMA_0409", + "224", + "NCI_Agil_Mam_Tum_RMA_0409", "NCI Mammary LMT miRNA v2 (Apr09) RMA" - ], + ], [ - "36", - "MA_M_0704_M", + "36", + "MA_M_0704_M", "NCI Mammary mRNA M430 (July04) MAS5" - ], + ], [ - "37", - "MA_M_0704_R", + "37", + "MA_M_0704_R", "NCI Mammary mRNA M430 (July04) RMA" ] ] - }, + }, "AXBXA": { "Bone Femur mRNA": [ [ - "411", - "UCLA_AXB/BXA_Femur_0113_RSN", + "411", + "UCLA_AXB/BXA_Femur_0113_RSN", "UCLA GSE27483 AXB/BXA Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] - ], + ], "Eye mRNA": [ [ - "210", - "Eye_AXBXA_1008_RankInv", + "210", + "Eye_AXBXA_1008_RankInv", "Eye AXBXA Illumina V6.2(Oct08) RankInv Beta" ] - ], + ], "Genotypes": [ [ - "636", - "AXBXAGeno", + "636", + "AXBXAGeno", "AXBXA Genotypes" ] - ], + ], "Heart mRNA": [ [ - "820", - "UCLA_AXB_BXA_Aor_Jan16", + "820", + "UCLA_AXB_BXA_Aor_Jan16", "UCLA AXB/BXA Aorta Affy M430 2.0 (Jan16) RMA" - ], + ], [ - "421", - "IRCM_AXBXA_HRI0213", + "421", + "IRCM_AXBXA_HRI0213", "IRCM AXB/BXA Mouse Heart ILM MouseRef-8 v2.0 (Feb13) RankInv" ] - ], + ], "Liver mRNA": [ [ - "822", - "UCLA_AXB_BXA_Liv_Jan16", + "822", + "UCLA_AXB_BXA_Liv_Jan16", "UCLA AXB/BXA Liver Affy M430 2.0 (Jan16) RMA" - ], + ], [ - "352", - "GSE16780AB_UCLA_ML0911", + "352", + "GSE16780AB_UCLA_ML0911", "GSE16780 UCLA Mouse AXB/BXA Liver Affy HT M430A (Sep11) RMA" ] - ], + ], "Phenotypes": [ [ - "629", - "AXBXAPublish", + "629", + "AXBXAPublish", "AXB/BXA Published Phenotypes" ] ] - }, + }, "B6BTBRF2": { "Genotypes": [ [ - "618", - "B6BTBRF2Geno", + "618", + "B6BTBRF2Geno", "B6BTBRF2 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "38", - "LVF2_M_0704_M", + "38", + "LVF2_M_0704_M", "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) MAS5" - ], + ], [ - "39", - "LVF2_M_0704_R", + "39", + "LVF2_M_0704_R", "(B6 x BTBR)F2-ob/ob Liver mRNA M430 (Jul04) RMA" ] - ], + ], "Phenotypes": [ [ - "603", - "B6BTBRF2Publish", + "603", + "B6BTBRF2Publish", "B6BTBRF2 Published Phenotypes" ] ] - }, + }, "B6D2": { "Phenotypes": [ [ - "None", - "B6D2Publish", + "None", + "B6D2Publish", "UTHSC-Glaucoma-Aged-Retina Phenotypes" ] ] - }, + }, "B6D2F2": { "Brain mRNA": [ [ - "78", - "BRF2_M_0805_P", + "78", + "BRF2_M_0805_P", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) PDNN" - ], + ], [ - "77", - "BRF2_M_0805_R", + "77", + "BRF2_M_0805_R", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) RMA" - ], + ], [ - "76", - "BRF2_M_0805_M", + "76", + "BRF2_M_0805_M", "OHSU/VA B6D2F2 Brain mRNA M430 (Aug05) MAS5" - ], + ], [ - "33", - "BRF2_M_0304_P", + "33", + "BRF2_M_0304_P", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) PDNN" - ], + ], [ - "31", - "BRF2_M_0304_M", + "31", + "BRF2_M_0304_M", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) MAS5" - ], + ], [ - "32", - "BRF2_M_0304_R", + "32", + "BRF2_M_0304_R", "OHSU/VA B6D2F2 Brain mRNA M430A (Mar04) RMA" ] - ], + ], "Genotypes": [ [ - "637", - "B6D2F2Geno", + "637", + "B6D2F2Geno", "B6D2F2 Genotypes" ] ] - }, + }, "B6D2F2-PSU": { "Genotypes": [ [ - "617", - "B6D2F2-PSUGeno", + "617", + "B6D2F2-PSUGeno", "B6D2F2-PSU Genotypes" ] - ], + ], "Phenotypes": [ [ - "None", - "B6D2F2-PSUPublish", + "None", + "B6D2F2-PSUPublish", "B6D2F2-PSU Phenotypes" ] ] - }, + }, "B6D2RI": { "Hippocampus mRNA": [ [ - "712", - "UTHSC_BXDAged_0615", + "712", + "UTHSC_BXDAged_0615", "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) RMA" - ], + ], [ - "805", - "UTHSC_BXDAgedEx_1116", + "805", + "UTHSC_BXDAgedEx_1116", "UTHSC BXD Aged Hippocampus Affy Mouse Gene 1.0 ST (Jun15) Exon Level RMA" - ], + ], [ - "391", - "UTHSC_B6D2RI_H_0912", + "391", + "UTHSC_B6D2RI_H_0912", "UTHSC B6D2RI Aged Hippocampus Affy Mouse Gene 1.0 ST (Sep12) RMA" ] - ], + ], "Phenotypes": [ [ - "651", - "B6D2RIPublish", + "651", + "B6D2RIPublish", "B6D2RI Phenotypes" ] ] - }, + }, "BDF2-1999": { "Genotypes": [ [ - "None", - "BDF2-1999Geno", + "None", + "BDF2-1999Geno", "BDF2-1999 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "169", - "UCLA_BDF2_LIVER_1999", + "169", + "UCLA_BDF2_LIVER_1999", "UCLA BDF2 Liver (1999) mlratio" ] ] - }, + }, "BDF2-2005": { "Genotypes": [ [ - "None", - "BDF2-2005Geno", + "None", + "BDF2-2005Geno", "BDF2-2005 Genotypes" ] - ], + ], "Striatum mRNA": [ [ - "83", - "SA_M2_0905_M", + "83", + "SA_M2_0905_M", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) MAS5" - ], + ], [ - "85", - "SA_M2_0905_P", + "85", + "SA_M2_0905_P", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) PDNN" - ], + ], [ - "84", - "SA_M2_0905_R", + "84", + "SA_M2_0905_R", "OHSU/VA B6D2F2 Striatum M430v2 (Sep05) RMA" ] ] - }, + }, "BHF2": { "Adipose mRNA": [ [ - "197", - "UCLA_BHF2_ADIPOSE_FEMALE", + "197", + "UCLA_BHF2_ADIPOSE_FEMALE", "UCLA BHF2 Adipose Female mlratio" - ], + ], [ - "196", - "UCLA_BHF2_ADIPOSE_MALE", + "196", + "UCLA_BHF2_ADIPOSE_MALE", "UCLA BHF2 Adipose Male mlratio" - ], + ], [ - "165", - "UCLA_BHF2_ADIPOSE_0605", + "165", + "UCLA_BHF2_ADIPOSE_0605", "UCLA BHF2 Adipose (June05) mlratio" ] - ], + ], "Brain mRNA": [ [ - "199", - "UCLA_BHF2_BRAIN_FEMALE", + "199", + "UCLA_BHF2_BRAIN_FEMALE", "UCLA BHF2 Brain Female mlratio" - ], + ], [ - "198", - "UCLA_BHF2_BRAIN_MALE", + "198", + "UCLA_BHF2_BRAIN_MALE", "UCLA BHF2 Brain Male mlratio" - ], + ], [ - "166", - "UCLA_BHF2_BRAIN_0605", + "166", + "UCLA_BHF2_BRAIN_0605", "UCLA BHF2 Brain (June05) mlratio" ] - ], + ], "Genotypes": [ [ - "None", - "BHF2Geno", + "None", + "BHF2Geno", "BHF2 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "201", - "UCLA_BHF2_LIVER_FEMALE", + "201", + "UCLA_BHF2_LIVER_FEMALE", "UCLA BHF2 Liver Female mlratio" - ], + ], [ - "200", - "UCLA_BHF2_LIVER_MALE", + "200", + "UCLA_BHF2_LIVER_MALE", "UCLA BHF2 Liver Male mlratio" - ], + ], [ - "167", - "UCLA_BHF2_LIVER_0605", + "167", + "UCLA_BHF2_LIVER_0605", "UCLA BHF2 Liver (June05) mlratio" ] - ], + ], "Phenotypes": [ [ - "None", - "BHF2Publish", + "None", + "BHF2Publish", "BHF2 Phenotypes" ] ] - }, + }, "BHHBF2": { "Adipose mRNA": [ [ - "174", - "UCLA_BHHBF2_ADIPOSE_2005", + "174", + "UCLA_BHHBF2_ADIPOSE_2005", "UCLA BHHBF2 Adipose (2005) mlratio" - ], + ], [ - "180", - "UCLA_BHHBF2_ADIPOSE_MALE", + "180", + "UCLA_BHHBF2_ADIPOSE_MALE", "UCLA BHHBF2 Adipose Male Only" - ], + ], [ - "181", - "UCLA_BHHBF2_ADIPOSE_FEMALE", + "181", + "UCLA_BHHBF2_ADIPOSE_FEMALE", "UCLA BHHBF2 Adipose Female Only" ] - ], + ], "Brain mRNA": [ [ - "175", - "UCLA_BHHBF2_BRAIN_2005", + "175", + "UCLA_BHHBF2_BRAIN_2005", "UCLA BHHBF2 Brain (2005) mlratio" - ], + ], [ - "182", - "UCLA_BHHBF2_BRAIN_MALE", + "182", + "UCLA_BHHBF2_BRAIN_MALE", "UCLA BHHBF2 Brain Male Only" - ], + ], [ - "183", - "UCLA_BHHBF2_BRAIN_FEMALE", + "183", + "UCLA_BHHBF2_BRAIN_FEMALE", "UCLA BHHBF2 Brain Female Only" ] - ], + ], "Genotypes": [ [ - "None", - "BHHBF2Geno", + "None", + "BHHBF2Geno", "BHHBF2 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "176", - "UCLA_BHHBF2_LIVER_2005", + "176", + "UCLA_BHHBF2_LIVER_2005", "UCLA BHHBF2 Liver (2005) mlratio" - ], + ], [ - "184", - "UCLA_BHHBF2_LIVER_MALE", + "184", + "UCLA_BHHBF2_LIVER_MALE", "UCLA BHHBF2 Liver Male Only" - ], + ], [ - "185", - "UCLA_BHHBF2_LIVER_FEMALE", + "185", + "UCLA_BHHBF2_LIVER_FEMALE", "UCLA BHHBF2 Liver Female Only" ] - ], + ], "Muscle mRNA": [ [ - "177", - "UCLA_BHHBF2_MUSCLE_2005", + "177", + "UCLA_BHHBF2_MUSCLE_2005", "UCLA BHHBF2 Muscle (2005) mlratio" - ], + ], [ - "186", - "UCLA_BHHBF2_MUSCLE_MALE", + "186", + "UCLA_BHHBF2_MUSCLE_MALE", "UCLA BHHBF2 Muscle Male Only" - ], + ], [ - "187", - "UCLA_BHHBF2_MUSCLE_FEMALE", + "187", + "UCLA_BHHBF2_MUSCLE_FEMALE", "UCLA BHHBF2 Muscle Female Only" ] ] - }, + }, "BXD": { "Adipose Proteome": [ [ - "797", - "EPFL_AdiPro0416", + "797", + "EPFL_AdiPro0416", "EPFL/ETHZ BXD Brown Adipose, Total Tissue Proteome, Chow Diet (Apr16) Light SWATH" - ], + ], [ - "798", - "EPFL_AdiMitPro0416", + "798", + "EPFL_AdiMitPro0416", "EPFL/ETHZ BXD Brown Adipose, Isolated Mitochondria Proteome, Chow Diet (Apr16) Light SWATH" ] - ], + ], "Adipose mRNA": [ [ - "469", - "EPFLADGL1013", + "469", + "EPFLADGL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Gene Level (Oct13) RMA" - ], + ], [ - "470", - "EPFLADEL1013", + "470", + "EPFLADEL1013", "EPFL/LISP BXD CD Brown Adipose Affy Mouse Gene 2.0 ST Exon Level (Oct13) RMA" - ], + ], [ - "777", - "EL_BXDCDHFDScWAT_0216", + "777", + "EL_BXDCDHFDScWAT_0216", "EPFL/LISP BXD CD+HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" - ], + ], [ - "778", - "EL_BXDHFDScWAT_0216", + "778", + "EL_BXDHFDScWAT_0216", "EPFL/LISP BXD HFD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" - ], + ], [ - "779", - "EL_BXDCDScWAT_0216", + "779", + "EL_BXDCDScWAT_0216", "EPFL/LISP BXD CD Subcutaneous WAT Affy MTA 1.0 Gene Level (Feb16) RMA" ] - ], + ], "Adrenal Gland mRNA": [ [ - "388", - "INIA_Adrenal_RMA_0612", + "388", + "INIA_Adrenal_RMA_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA" - ], + ], [ - "426", - "INIA_Adrenal_RMA_F_0612", + "426", + "INIA_Adrenal_RMA_F_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Females" - ], + ], [ - "425", - "INIA_Adrenal_RMA_M_0612", + "425", + "INIA_Adrenal_RMA_M_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Males" - ], + ], [ - "334", - "INIA_Adrenal_RMA_Ex_0612", + "334", + "INIA_Adrenal_RMA_Ex_0612", "INIA Adrenal Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] - ], + ], "Amygdala mRNA": [ [ - "323", - "INIA_AmgCoh_0311", + "323", + "INIA_AmgCoh_0311", "INIA Amygdala Cohort Affy MoGene 1.0 ST (Mar11) RMA" - ], + ], [ - "280", - "INIA_Amg_BLA_RMA_1110", + "280", + "INIA_Amg_BLA_RMA_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA" - ], + ], [ - "316", - "INIA_Amg_BLA_RMA_M_1110", + "316", + "INIA_Amg_BLA_RMA_M_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Male" - ], + ], [ - "315", - "INIA_Amg_BLA_RMA_F_1110", + "315", + "INIA_Amg_BLA_RMA_F_1110", "INIA Amygdala Affy MoGene 1.0 ST (Nov10) RMA Female" - ], + ], [ - "158", - "INIA_Amg_BLA_Ex-RMA_1110", + "158", + "INIA_Amg_BLA_Ex-RMA_1110", "INIA Amygdala Exon Affy MoGene 1.0 ST (Nov10) RMA" ] - ], + ], "Bone Femur mRNA": [ [ - "410", - "UCLA_BXD_Femur_0113_RSN", + "410", + "UCLA_BXD_Femur_0113_RSN", "UCLA GSE27483 BXD Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" - ], + ], [ - "414", - "UCLA_BXD-on_Femur_0113_RSN", + "414", + "UCLA_BXD-on_Femur_0113_RSN", "UCLA GSE27483 BXD Only Bone Femur ILM Mouse WG-6 v1.1 (Jan13) RSN" ] - ], + ], "Brain mRNA": [ [ - "164", - "UTHSC_BXD_WB_RNASeq1112", + "164", + "UTHSC_BXD_WB_RNASeq1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Untrimmed" - ], + ], [ - "590", - "UTHSC_BXD_WB_RNASeqtrim1_1112", + "590", + "UTHSC_BXD_WB_RNASeqtrim1_1112", "UTHSC Mouse BXD Whole Brain RNA Sequence (Nov12) RPKM Trimmed 1.0" - ], + ], [ - "394", - "UTHSC_BXD_WB_RNASeqEx1112", + "394", + "UTHSC_BXD_WB_RNASeqEx1112", "UTHSC Mouse BXD Whole Brain RNA Sequence Exon Level (Nov12) RPKM" - ], + ], [ - "123", - "BR_M2_1106_R", + "123", + "BR_M2_1106_R", "UCHSC BXD Whole Brain M430 2.0 (Nov06) RMA" - ], + ], [ - "113", - "IBR_M_0606_R", + "113", + "IBR_M_0606_R", "INIA Brain mRNA M430 (Jun06) RMA" - ], + ], [ - "101", - "IBR_M_0106_P", + "101", + "IBR_M_0106_P", "INIA Brain mRNA M430 (Jan06) PDNN" - ], + ], [ - "102", - "IBR_M_0106_R", + "102", + "IBR_M_0106_R", "INIA Brain mRNA M430 (Jan06) RMA" - ], + ], [ - "95", - "BR_U_1105_P", + "95", + "BR_U_1105_P", "UTHSC Brain mRNA U74Av2 (Nov05) PDNN" - ], + ], [ - "81", - "BR_U_0805_P", + "81", + "BR_U_0805_P", "UTHSC Brain mRNA U74Av2 (Aug05) PDNN" - ], + ], [ - "80", - "BR_U_0805_M", + "80", + "BR_U_0805_M", "UTHSC Brain mRNA U74Av2 (Aug05) MAS5" - ], + ], [ - "82", - "BR_U_0805_R", + "82", + "BR_U_0805_R", "UTHSC Brain mRNA U74Av2 (Aug05) RMA" - ], + ], [ - "42", - "CB_M_0204_P", + "42", + "CB_M_0204_P", "INIA Brain mRNA M430 (Feb04) PDNN" ] - ], + ], "Cartilage mRNA": [ [ - "208", - "UCLA_BXDBXH_CARTILAGE_V2", + "208", + "UCLA_BXDBXH_CARTILAGE_V2", "UCLA BXD and BXH Cartilage v2" - ], + ], [ - "204", - "UCLA_BXDBXH_CARTILAGE", + "204", + "UCLA_BXDBXH_CARTILAGE", "UCLA BXD and BXH Cartilage" - ], + ], [ - "178", - "UCLA_BXD_CARTILAGE", + "178", + "UCLA_BXD_CARTILAGE", "UCLA BXD Cartilage" ] - ], + ], "Cerebellum mRNA": [ [ - "72", - "GCB_M2_0505_R", + "72", + "GCB_M2_0505_R", "GE-NIAAA Cerebellum mRNA M430v2 (May05) RMA" - ], + ], [ - "73", - "GCB_M2_0505_P", + "73", + "GCB_M2_0505_P", "GE-NIAAA Cerebellum mRNA M430v2 (May05) PDNN" - ], + ], [ - "71", - "GCB_M2_0505_M", + "71", + "GCB_M2_0505_M", "GE-NIAAA Cerebellum mRNA M430v2 (May05) MAS5" - ], + ], [ - "56", - "CB_M_0305_R", + "56", + "CB_M_0305_R", "SJUT Cerebellum mRNA M430 (Mar05) RMA" - ], + ], [ - "55", - "CB_M_0305_P", + "55", + "CB_M_0305_P", "SJUT Cerebellum mRNA M430 (Mar05) PDNN" - ], + ], [ - "54", - "CB_M_0305_M", + "54", + "CB_M_0305_M", "SJUT Cerebellum mRNA M430 (Mar05) MAS5" - ], + ], [ - "46", - "CB_M_1004_R", + "46", + "CB_M_1004_R", "SJUT Cerebellum mRNA M430 (Oct04) RMA" - ], + ], [ - "45", - "CB_M_1004_P", + "45", + "CB_M_1004_P", "SJUT Cerebellum mRNA M430 (Oct04) PDNN" - ], + ], [ - "44", - "CB_M_1004_M", + "44", + "CB_M_1004_M", "SJUT Cerebellum mRNA M430 (Oct04) MAS5" - ], + ], [ - "9", - "CB_M_1003_M", + "9", + "CB_M_1003_M", "SJUT Cerebellum mRNA M430 (Oct03) MAS5" ] - ], + ], "Eye mRNA": [ [ - "207", - "Eye_M2_0908_R", + "207", + "Eye_M2_0908_R", "Eye M430v2 (Sep08) RMA" - ], + ], [ - "10", - "gn10", + "10", + "gn10", "Eye M430v2 No Mutant/Mutant (Aug12) RMA" - ], + ], [ - "261", - "Eye_M2_0908_R_NB", + "261", + "Eye_M2_0908_R_NB", "Eye M430v2 Mutant Gpnmb (Sep08) RMA" - ], + ], [ - "262", - "Eye_M2_0908_R_ND", + "262", + "Eye_M2_0908_R_ND", "Eye M430v2 WT Gpnmb (Sep08) RMA" - ], + ], [ - "382", - "Eye_M2_0908_WTWT", + "382", + "Eye_M2_0908_WTWT", "Eye M430v2 WT WT (Sep08) RMA" - ], + ], [ - "279", - "Eye_M2_0908_R_WT", + "279", + "Eye_M2_0908_R_WT", "Eye M430v2 WT Tyrp1 (Sep08) RMA" - ], + ], [ - "278", - "Eye_M2_0908_R_MT", + "278", + "Eye_M2_0908_R_MT", "Eye M430v2 Mutant Tyrp1 (Sep08) RMA" - ], + ], [ - "400", - "DBA2J-ONH-1212", + "400", + "DBA2J-ONH-1212", "Howell et al. 2011, DBA/2J Glaucoma Optic Nerve Head M430 2.0 (Dec12) RMA" - ], + ], [ - "360", - "BXD_GLA_0911", + "360", + "BXD_GLA_0911", "Howell et al. 2011, DBA/2J Glaucoma Retina M430 2.0 (Sep11) RMA" ] - ], + ], "Fecal Metabolome": [ [ - "717", - "RTI_RCMRC-BXDFecMetlog0814", + "717", + "RTI_RCMRC-BXDFecMetlog0814", "RTI RCMRC BXD Fecal Metabolites CD+HFD (Aug14) Log2" - ], + ], [ - "716", - "RTI_RCMRC-BXDFecMetHFlog0814", + "716", + "RTI_RCMRC-BXDFecMetHFlog0814", "RTI RCMRC BXD Fecal Metabolites HFD (Aug14) Log2" - ], + ], [ - "715", - "RTI_RCMRC-BXDFecMetLFlog0814", + "715", + "RTI_RCMRC-BXDFecMetLFlog0814", "RTI RCMRC BXD Fecal Metabolites CD (Aug14) Log2" ] - ], + ], "Gastrointestinal mRNA": [ [ - "539", - "UTHSC_GutGL_0414", + "539", + "UTHSC_GutGL_0414", "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Gene Level (Apr14) RMA" - ], + ], [ - "597", - "UTHSC_GutExL_0414", + "597", + "UTHSC_GutExL_0414", "UTHSC Mouse BXD Gastrointestinal Affy MoGene 1.0 ST Exon Level (Apr14) RMA" ] - ], + ], "Genotypes": [ [ - "600", - "BXDGeno", + "600", + "BXDGeno", "BXD Genotypes" ] - ], + ], "Heart mRNA": [ [ - "819", - "UCLA_BXD_Aor_Jan16", + "819", + "UCLA_BXD_Aor_Jan16", "UCLA BXD Aorta Affy M430 2.0 (Jan16) RMA" - ], + ], [ - "485", - "EPFL-LISPBXDHeCD0114", + "485", + "EPFL-LISPBXDHeCD0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" - ], + ], [ - "486", - "EPFL-LISPBXDHeHFD0114", + "486", + "EPFL-LISPBXDHeHFD0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Gene Level (Jan14) RMA" - ], + ], [ - "487", - "EPFL-LISPBXDHeCDEx0114", + "487", + "EPFL-LISPBXDHeCDEx0114", "EPFL/LISP BXD CD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" - ], + ], [ - "488", - "EPFL-LISPBXDHeHFDEx0114", + "488", + "EPFL-LISPBXDHeHFDEx0114", "EPFL/LISP BXD HFD Heart Affy Mouse Gene 2.0 ST Exon Level (Jan14) RMA" ] - ], + ], "Hematopoietic Cells mRNA": [ [ - "149", - "UMCG_0907_HemaStem_ori", + "149", + "UMCG_0907_HemaStem_ori", "UMCG Stem Cells ILM6v1.1 (Apr09) original" - ], + ], [ - "145", - "UMCG_0907_HemaStem", + "145", + "UMCG_0907_HemaStem", "UMCG Stem Cells ILM6v1.1 (Apr09) transformed" - ], + ], [ - "151", - "UMCG_0907_Pro_ori", + "151", + "UMCG_0907_Pro_ori", "UMCG Progenitor Cells ILM6v1.1 (Apr09) original" - ], + ], [ - "147", - "UMCG_0907_Pro", + "147", + "UMCG_0907_Pro", "UMCG Progenitor Cells ILM6v1.1 (Apr09) transformed" - ], + ], [ - "150", - "UMCG_0907_Eryth_ori", + "150", + "UMCG_0907_Eryth_ori", "UMCG Erythroid Cells ILM6v1.1 (Apr09) original" - ], + ], [ - "146", - "UMCG_0907_Eryth", + "146", + "UMCG_0907_Eryth", "UMCG Erythroid Cells ILM6v1.1 (Apr09) transformed" - ], + ], [ - "148", - "UMCG_0907_Myeloid_ori", + "148", + "UMCG_0907_Myeloid_ori", "UMCG Myeloid Cells ILM6v1.1 (Apr09) original" - ], + ], [ - "144", - "UMCG_0907_Myeloid", + "144", + "UMCG_0907_Myeloid", "UMCG Myeloid Cells ILM6v1.1 (Apr09) transformed" - ], + ], [ - "7", - "HC_U_0304_R", + "7", + "HC_U_0304_R", "GNF Stem Cells U74Av2 (Mar04) RMA" ] - ], + ], "Hippocampal Precursor Cells mRNA": [ [ - "706", - "CRTD_HipPreCell1214", + "706", + "CRTD_HipPreCell1214", "CRTD BXD Hippocampal Precursor Cells ILM MouseWG-6_R13 (Dec14) Quantile" ] - ], + ], "Hippocampus mRNA": [ [ - "112", - "HC_M2_0606_P", + "112", + "HC_M2_0606_P", "Hippocampus Consortium M430v2 (Jun06) PDNN" - ], + ], [ - "111", - "HC_M2_0606_M", + "111", + "HC_M2_0606_M", "Hippocampus Consortium M430v2 (Jun06) MAS5" - ], + ], [ - "110", - "HC_M2_0606_R", + "110", + "HC_M2_0606_R", "Hippocampus Consortium M430v2 (Jun06) RMA" - ], + ], [ - "206", - "UMUTAffyExon_0209_RMA", + "206", + "UMUTAffyExon_0209_RMA", "UMUTAffy Hippocampus Exon (Feb09) RMA" - ], + ], [ - "814", - "UTHSC_ILM_BXD_hipp_NOSb_0217", + "814", + "UTHSC_ILM_BXD_hipp_NOSb_0217", "UTHSC BXD Hippocampus ILM v6.1 NOS Balanced (Feb17) RankInv" - ], + ], [ - "815", - "UTHSC_ILM_BXD_hipp_NOEb_0217", + "815", + "UTHSC_ILM_BXD_hipp_NOEb_0217", "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb17) RankInv" - ], + ], [ - "816", - "UTHSC_ILM_BXD_hipp_RSSb_0217", + "816", + "UTHSC_ILM_BXD_hipp_RSSb_0217", "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb17) RankInv" - ], + ], [ - "817", - "UTHSC_ILM_BXD_hipp_RSEb_0217", + "817", + "UTHSC_ILM_BXD_hipp_RSEb_0217", "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb17) RankInv" - ], + ], [ - "780", - "UTHSC_ILM_BXD_hipp_NOEb_0216", + "780", + "UTHSC_ILM_BXD_hipp_NOEb_0216", "UTHSC BXD Hippocampus ILM v6.1 NOE Balanced (Feb16) RankInv" - ], + ], [ - "781", - "UTHSC_ILM_BXD_hipp_RSEb_0216", + "781", + "UTHSC_ILM_BXD_hipp_RSEb_0216", "UTHSC BXD Hippocampus ILM v6.1 RSE Balanced (Feb16) RankInv" - ], + ], [ - "782", - "UTHSC_ILM_BXD_hipp_RSSb_0216", + "782", + "UTHSC_ILM_BXD_hipp_RSSb_0216", "UTHSC BXD Hippocampus ILM v6.1 RSS Balanced (Feb16) RankInv" - ], + ], [ - "291", - "UT_ILM_BXD_hipp_5T_1112", + "291", + "UT_ILM_BXD_hipp_5T_1112", "UTHSC Hippocampus Illumina v6.1 All Combined (Nov12) RankInv" - ], + ], [ - "292", - "UT_ILM_BXD_hipp_NON_1112", + "292", + "UT_ILM_BXD_hipp_NON_1112", "UTHSC Hippocampus Illumina v6.1 NON (Nov12) RankInv" - ], + ], [ - "293", - "UT_ILM_BXD_hipp_NOS_1112", + "293", + "UT_ILM_BXD_hipp_NOS_1112", "UTHSC Hippocampus Illumina v6.1 NOS (Nov12) RankInv" - ], + ], [ - "294", - "UT_ILM_BXD_hipp_NOE_1112", + "294", + "UT_ILM_BXD_hipp_NOE_1112", "UTHSC Hippocampus Illumina v6.1 NOE (Nov12) RankInv" - ], + ], [ - "295", - "UT_ILM_BXD_hipp_RSS_1112", + "295", + "UT_ILM_BXD_hipp_RSS_1112", "UTHSC Hippocampus Illumina v6.1 RSS (Nov12) RankInv" - ], + ], [ - "296", - "UT_ILM_BXD_hipp_RSE_1112", + "296", + "UT_ILM_BXD_hipp_RSE_1112", "UTHSC Hippocampus Illumina v6.1 RSE (Nov12) RankInv" - ], + ], [ - "242", - "UT_ILM_BXD_hipp_NON_0909", + "242", + "UT_ILM_BXD_hipp_NON_0909", "UTHSC Hippocampus Illumina v6.1 NON (Sep09) RankInv" - ], + ], [ - "243", - "UT_ILM_BXD_hipp_NOS_0909", + "243", + "UT_ILM_BXD_hipp_NOS_0909", "UTHSC Hippocampus Illumina v6.1 NOS (Sep09) RankInv" - ], + ], [ - "246", - "UT_ILM_BXD_hipp_NOE_0909", + "246", + "UT_ILM_BXD_hipp_NOE_0909", "UTHSC Hippocampus Illumina v6.1 NOE (Sep09) RankInv" - ], + ], [ - "244", - "UT_ILM_BXD_hipp_RSS_0909", + "244", + "UT_ILM_BXD_hipp_RSS_0909", "UTHSC Hippocampus Illumina v6.1 RSS (Sep09) RankInv" - ], + ], [ - "245", - "UT_ILM_BXD_hipp_RSE_0909", + "245", + "UT_ILM_BXD_hipp_RSE_0909", "UTHSC Hippocampus Illumina v6.1 RSE (Sep09) RankInv" - ], + ], [ - "711", - "UTHSC_BXD_AgeHipp0515", + "711", + "UTHSC_BXD_AgeHipp0515", "UTHSC BXD Aged Hippocampus Affy MoGene1.0 ST (May15) RMA Gene Level" ] - ], + ], "Hypothalamus mRNA": [ [ - "281", - "INIA_Hyp_RMA_1110", + "281", + "INIA_Hyp_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10)" - ], + ], [ - "318", - "INIA_Hyp_M_RMA_1110", + "318", + "INIA_Hyp_M_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Male" - ], + ], [ - "317", - "INIA_Hyp_F_RMA_1110", + "317", + "INIA_Hyp_F_RMA_1110", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) Female" - ], + ], [ - "459", - "INIA_Hyp_PCA_0813_v4", + "459", + "INIA_Hyp_PCA_0813_v4", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080913" - ], + ], [ - "458", - "INIA_Hyp_PCA_0813_v3", + "458", + "INIA_Hyp_PCA_0813_v3", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080813" - ], + ], [ - "457", - "INIA_Hyp_PCA_0813_v2", + "457", + "INIA_Hyp_PCA_0813_v2", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080513" - ], + ], [ - "456", - "INIA_Hyp_PCA_0813", + "456", + "INIA_Hyp_PCA_0813", "INIA Hypothalamus Affy MoGene 1.0 ST (Nov10) PCA Test v080213" - ], + ], [ - "159", - "INIA_Hyp_RMA_Ex-1110", + "159", + "INIA_Hyp_RMA_Ex-1110", "INIA Hypothalamus Exon Affy MoGene 1.0 ST (Nov10)" ] - ], + ], "Kidney mRNA": [ [ - "240", - "MA_M2M_0706_R", + "240", + "MA_M2M_0706_R", "Mouse kidney M430v2 Male (Aug06) RMA" - ], + ], [ - "239", - "MA_M2F_0706_R", + "239", + "MA_M2F_0706_R", "Mouse kidney M430v2 Female (Aug06) RMA" - ], + ], [ - "118", - "MA_M2_0806_R", + "118", + "MA_M2_0806_R", "Mouse kidney M430v2 Sex Balanced (Aug06) RMA" - ], + ], [ - "117", - "MA_M2_0806_P", + "117", + "MA_M2_0806_P", "Mouse Kidney M430v2 Sex Balanced (Aug06) PDNN" - ], + ], [ - "115", - "MA_M2_0706_R", + "115", + "MA_M2_0706_R", "Mouse Kidney M430v2 (Jul06) RMA" - ], + ], [ - "116", - "MA_M2_0706_P", + "116", + "MA_M2_0706_P", "Mouse Kidney M430v2 (Jul06) PDNN" ] - ], + ], "Liver Metabolome": [ [ - "835", - "UTHSC-ETHZ-EPFL_LivPMetExtACD0817", + "835", + "UTHSC-ETHZ-EPFL_LivPMetExtACD0817", "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, Chow Diet Cohorts (Jul 2017) log2" - ], + ], [ - "836", - "UTHSC-ETHZ-EPFL_LivPMetExtAHFD0817", + "836", + "UTHSC-ETHZ-EPFL_LivPMetExtAHFD0817", "UTHSC/ETHZ/EPFL BXD Liver Polar Metabolites Extraction, HFD Cohorts (Jul 2017) log2" - ], + ], [ - "473", - "EPFL-LISP_LivPMetCDHFD1213", + "473", + "EPFL-LISP_LivPMetCDHFD1213", "EPFL/LISP BXD Liver Polar Metabolites CD+HFD (Jun14)" - ], + ], [ - "474", - "EPFL-LISP_LivPMetHFD1213", + "474", + "EPFL-LISP_LivPMetHFD1213", "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14)" - ], + ], [ - "475", - "EPFL-LISP_LivPMetCD1213", + "475", + "EPFL-LISP_LivPMetCD1213", "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14)" - ], + ], [ - "713", - "EPFL-LISP_LivPMetlog2HFD1213", + "713", + "EPFL-LISP_LivPMetlog2HFD1213", "EPFL/LISP BXD Liver Polar Metabolites HFD (Jun14) Log2" - ], + ], [ - "714", - "EPFL-LISP_LivPMetlog2CD1213", + "714", + "EPFL-LISP_LivPMetlog2CD1213", "EPFL/LISP BXD Liver Polar Metabolites CD (Jun14) Log2" ] - ], + ], "Liver Proteome": [ [ - "540", - "EPFLETHZBXDprotCD0514", + "540", + "EPFLETHZBXDprotCD0514", "EPFL/ETHZ BXD Liver, Chow Diet (Jun16) Top100 SWATH" - ], + ], [ - "541", - "EPFLETHZBXDprotHFD0514", + "541", + "EPFLETHZBXDprotHFD0514", "EPFL/ETHZ BXD Liver, High Fat Diet (Jun16) Top100 SWATH" - ], + ], [ - "704", - "EPFLETHZBXDprotCD_LS1114", + "704", + "EPFLETHZBXDprotCD_LS1114", "EPFL/ETHZ BXD Liver, Chow Diet (Oct14) Top10 SWATH" - ], + ], [ - "705", - "EPFLETHZBXDprotHF_LS1114", + "705", + "EPFLETHZBXDprotHF_LS1114", "EPFL/ETHZ BXD Liver, High Fat Diet Diet (Oct14) Top10 SWATH" - ], + ], [ - "703", - "EPFLBXDprotCD-CDHFDRPN0214", + "703", + "EPFLBXDprotCD-CDHFDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins CD+HFD (Feb14) SRM" - ], + ], [ - "490", - "EPFLBXDprotCDRPN0214", + "490", + "EPFLBXDprotCDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins CD (Feb14) SRM" - ], + ], [ - "489", - "EPFLBXDprotHFDRPN0214", + "489", + "EPFLBXDprotHFDRPN0214", "EPFL/LISP BXD Liver, Soluble Proteins HFD (Feb14) SRM" ] - ], + ], "Liver mRNA": [ [ - "857", - "EPFLMouseLiverCDHFDRMA0818", + "857", + "EPFLMouseLiverCDHFDRMA0818", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], + ], [ - "858", - "EPFLMouseLiverHFDRMA0818", + "858", + "EPFLMouseLiverHFDRMA0818", "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], + ], [ - "859", - "EPFLMouseLiverCDRMA0818", + "859", + "EPFLMouseLiverCDRMA0818", "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Aug18) RMA" - ], + ], [ - "854", - "NIA-AgBXD-Liv_CDHFD-rna-seq-0818", + "854", + "NIA-AgBXD-Liv_CDHFD-rna-seq-0818", "NIA Aging BXD CD+HFD Liver RNA-Seq (Aug18) Log2" - ], + ], [ - "855", - "NIA-AgBXD-Liv_HFD-rna-seq-0818", + "855", + "NIA-AgBXD-Liv_HFD-rna-seq-0818", "NIA Aging BXD HFD Liver RNA-Seq (Aug18) Log2" - ], + ], [ - "856", - "NIA-AgBXD-Liv_CD-rna-seq-0818", + "856", + "NIA-AgBXD-Liv_CD-rna-seq-0818", "NIA Aging BXD CD Liver RNA-Seq (Aug18) Log2" - ], + ], [ - "818", - "UCLA_BXD_Liv_Jan16", + "818", + "UCLA_BXD_Liv_Jan16", "UCLA BXD Liver Affy M430 2.0 (Jan16) RMA" - ], + ], [ - "430", - "EPFLMouseLiverRMA0413", + "430", + "EPFLMouseLiverRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], + ], [ - "431", - "EPFLMouseLiverHFDRMA0413", + "431", + "EPFLMouseLiverHFDRMA0413", "EPFL/LISP BXD HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], + ], [ - "848", - "EPFLMouseLiverHFCEx0413", + "848", + "EPFLMouseLiverHFCEx0413", "EPFL/LISP BXD HFC Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], + ], [ - "432", - "EPFLMouseLiverCDRMA0413", + "432", + "EPFLMouseLiverCDRMA0413", "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA" - ], + ], [ - "849", - "EPFLMouseLiverCDEx0413", + "849", + "EPFLMouseLiverCDEx0413", "EPFL/LISP BXD CD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], + ], [ - "433", - "EPFLMouseLiverBothExRMA0413", + "433", + "EPFLMouseLiverBothExRMA0413", "EPFL/LISP BXD CD+HFD Liver Affy Mouse Gene 1.0 ST (Apr13) RMA Exon Level" - ], + ], [ - "700", - "UTHSC-VGX_MmBXDHepatocytesRMA1014", + "700", + "UTHSC-VGX_MmBXDHepatocytesRMA1014", "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Gene Level (Oct14) RMA" - ], + ], [ - "701", - "UT-VGX_HEL1014", + "701", + "UT-VGX_HEL1014", "UT-VGX Hepatocytes Affy Mouse Gene 1.0 ST Exon Level (Oct14) RMA" - ], + ], [ - "373", - "GSE16780_UCLA_ML0911", + "373", + "GSE16780_UCLA_ML0911", "GSE16780 UCLA Hybrid MDP Liver Affy HT M430A (Sep11) RMA" - ], + ], [ - "325", - "SUH_Liv_RMA_0611", + "325", + "SUH_Liv_RMA_0611", "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST (Jun11) RMA" - ], + ], [ - "702", - "SUH_Liv_RMAEx_0611", + "702", + "SUH_Liv_RMAEx_0611", "SUH BXD Liver CCl4-treated Affy Mouse Gene 1.0 ST Exon Level (Jun11) RMA" - ], + ], [ - "256", - "GenEx_BXD_liverEt_M5_0912", + "256", + "GenEx_BXD_liverEt_M5_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Both Sexes" - ], + ], [ - "257", - "GenEx_BXD_liverEt_M5M_0912", + "257", + "GenEx_BXD_liverEt_M5M_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Males" - ], + ], [ - "258", - "GenEx_BXD_liverEt_M5F_0912", + "258", + "GenEx_BXD_liverEt_M5F_0912", "GenEx BXD EtOH Liver Affy M430 2.0 (Sep12) MAS5 Females" - ], + ], [ - "307", - "GenEx_BXD_liverEt_RMA_0211", + "307", + "GenEx_BXD_liverEt_RMA_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Both Sexes" - ], + ], [ - "308", - "GenEx_BXD_liverEt_RMA_M_0211", + "308", + "GenEx_BXD_liverEt_RMA_M_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Males" - ], + ], [ - "309", - "GenEx_BXD_liverEt_RMA_F_0211", + "309", + "GenEx_BXD_liverEt_RMA_F_0211", "GenEx BXD EtOH Liver Affy M430 2.0 (Feb11) RMA Females" - ], + ], [ - "310", - "GenEx_BXD_liverSal_RMA_0211", + "310", + "GenEx_BXD_liverSal_RMA_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Both Sexes" - ], + ], [ - "311", - "GenEx_BXD_liverSal_RMA_M_0211", + "311", + "GenEx_BXD_liverSal_RMA_M_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Males" - ], + ], [ - "312", - "GenEx_BXD_liverSal_RMA_F_0211", + "312", + "GenEx_BXD_liverSal_RMA_F_0211", "GenEx BXD Sal Liver Affy M430 2.0 (Feb11) RMA Females" ] - ], + ], "Lung mRNA": [ [ - "160", - "HZI_0408_R", + "160", + "HZI_0408_R", "HZI Lung M430v2 (Apr08) RMA" - ], + ], [ - "161", - "HZI_0408_M", + "161", + "HZI_0408_M", "HZI Lung M430v2 (Apr08) MAS5" ] - ], + ], "Midbrain mRNA": [ [ - "381", - "VUBXDMouseMidBrainQ0512", + "381", + "VUBXDMouseMidBrainQ0512", "VU BXD Midbrain Agilent SurePrint G3 Mouse GE (May12) Quantile" ] - ], + ], "Muscle mRNA": [ [ - "378", - "EPFLMouseMuscleRMA1211", + "378", + "EPFLMouseMuscleRMA1211", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], + ], [ - "380", - "EPFLMouseMuscleHFDRMA1211", + "380", + "EPFLMouseMuscleHFDRMA1211", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], + ], [ - "379", - "EPFLMouseMuscleCDRMA1211", + "379", + "EPFLMouseMuscleCDRMA1211", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA" - ], + ], [ - "395", - "EPFLMouseMuscleRMA_Ex1112", + "395", + "EPFLMouseMuscleRMA_Ex1112", "EPFL/LISP BXD CD+HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" - ], + ], [ - "396", - "EPFLMouseMuscleHFDRMAEx1112", + "396", + "EPFLMouseMuscleHFDRMAEx1112", "EPFL/LISP BXD HFD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" - ], + ], [ - "397", - "EPFLMouseMuscleCDRMAEx1112", + "397", + "EPFLMouseMuscleCDRMAEx1112", "EPFL/LISP BXD CD Muscle Affy Mouse Gene 1.0 ST (Nov12) RMA Exon Level" ] - ], + ], "Neocortex mRNA": [ [ - "374", - "DevNeocortex_ILM6.2P3RInv_1111", + "374", + "DevNeocortex_ILM6.2P3RInv_1111", "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov11) RankInv" - ], + ], [ - "375", - "DevNeocortex_ILM6.2P14RInv_1111", + "375", + "DevNeocortex_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov11) RankInv" - ], + ], [ - "284", - "HQFNeoc_1210v2_RankInv", + "284", + "HQFNeoc_1210v2_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10v2) RankInv" - ], + ], [ - "282", - "HQFNeoc_1210_RankInv", + "282", + "HQFNeoc_1210_RankInv", "HQF BXD Neocortex ILM6v1.1 (Dec10) RankInv" - ], + ], [ - "157", - "HQFNeoc_0208_RankInv", + "157", + "HQFNeoc_0208_RankInv", "HQF BXD Neocortex ILM6v1.1 (Feb08) RankInv" - ], + ], [ - "275", - "DevNeocortex_ILM6.2P14RInv_1110", + "275", + "DevNeocortex_ILM6.2P14RInv_1110", "BIDMC/UTHSC Dev Neocortex P14 ILMv6.2 (Nov10) RankInv" - ], + ], [ - "274", - "DevNeocortex_ILM6.2P3RInv_1110", + "274", + "DevNeocortex_ILM6.2P3RInv_1110", "BIDMC/UTHSC Dev Neocortex P3 ILMv6.2 (Nov10) RankInv" ] - ], + ], "Nucleus Accumbens mRNA": [ [ - "156", - "VCUSalo_1007_R", + "156", + "VCUSalo_1007_R", "VCU BXD NAc Sal M430 2.0 (Oct07) RMA" ] - ], + ], "Phenotypes": [ [ - "602", - "BXDPublish", + "602", + "BXDPublish", "BXD Published Phenotypes" - ], + ], [ - "658", - "GITrMetPublish", + "658", + "GITrMetPublish", "GI Tract Metagenome Phenotypes" ] - ], + ], "Pituitary Gland mRNA": [ [ - "389", - "INIA_PG_RMA_0612", + "389", + "INIA_PG_RMA_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA" - ], + ], [ - "427", - "INIA_Pituitary_RMA_F_0612", + "427", + "INIA_Pituitary_RMA_F_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Females" - ], + ], [ - "428", - "INIA_Pituitary_RMA_M_0612", + "428", + "INIA_Pituitary_RMA_M_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Males" - ], + ], [ - "335", - "INIA_PG_RMA_Ex_0612", + "335", + "INIA_PG_RMA_Ex_0612", "INIA Pituitary Affy MoGene 1.0ST (Jun12) RMA Exon Level" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "135", - "VCUSal_1206_R", + "135", + "VCUSal_1206_R", "VCU BXD PFC Sal M430 2.0 (Dec06) RMA" - ], + ], [ - "136", - "VCUEtOH_1206_R", + "136", + "VCUEtOH_1206_R", "VCU BXD PFC EtOH M430 2.0 (Dec06) RMA" - ], + ], [ - "137", - "VCUSal_1006_R", + "137", + "VCUSal_1006_R", "VCU BXD PFC Et vs Sal M430 2.0 (Dec06) Sscore" ] - ], + ], "Retina mRNA": [ [ - "709", - "DoDCMMRPRetMoGene2_0515", + "709", + "DoDCMMRPRetMoGene2_0515", "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Gene Level" - ], + ], [ - "710", - "DoDCMMRPRetMoGene2Ex_0515", + "710", + "DoDCMMRPRetMoGene2Ex_0515", "DoD Retina Normal Affy MoGene 2.0 ST (May15) RMA Exon Level" - ], + ], [ - "267", - "Illum_Retina_BXD_RankInv0410", + "267", + "Illum_Retina_BXD_RankInv0410", "Full HEI Retina Illumina V6.2 (Apr10) RankInv" - ], + ], [ - "302", - "G2NEI_ILM_Retina_BXD_RI0410", + "302", + "G2NEI_ILM_Retina_BXD_RI0410", "HEI Retina Normal Illumina V6.2 (Apr10) RankInv" - ], + ], [ - "785", - "DoDTATRCRetBLMoGene2_0316", + "785", + "DoDTATRCRetBLMoGene2_0316", "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Gene Level" - ], + ], [ - "787", - "DoDRetBlastvsNormal_0416", + "787", + "DoDRetBlastvsNormal_0416", "DoD Retina Blast vs Normal Retina Affy MoGene 2.0 ST (Apr16) RMA Gene Level" - ], + ], [ - "786", - "DoDTATRCRetBLMoGene2E_0316", + "786", + "DoDTATRCRetBLMoGene2E_0316", "DoD Retina After Blast Affy MoGene 2.0 ST (Mar16) RMA Exon Level" - ], + ], [ - "385", - "ONCRetILM6_0412", + "385", + "ONCRetILM6_0412", "ONC HEI Retina (April 2012) RankInv" - ], + ], [ - "371", - "HEIONCvsCRetILM6_0911", + "371", + "HEIONCvsCRetILM6_0911", "HEI ONC vs Control Retina Illumina V6.2 (Sep11) RankInv" ] - ], + ], "Spleen mRNA": [ [ - "283", - "UTHSC_SPL_RMA_1210", + "283", + "UTHSC_SPL_RMA_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA" - ], + ], [ - "773", - "UTHSC_SPLs1_RMA_1210", + "773", + "UTHSC_SPLs1_RMA_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set1" - ], + ], [ - "774", - "UTHSC_SPLs2_RMA_1210", + "774", + "UTHSC_SPLs2_RMA_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Set2" - ], + ], [ - "286", - "UTHSC_SPL_RMA_1210M", + "286", + "UTHSC_SPL_RMA_1210M", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Males" - ], + ], [ - "287", - "UTHSC_SPL_RMA_1210F", + "287", + "UTHSC_SPL_RMA_1210F", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Females" - ], + ], [ - "429", - "UTHSC_SPL_RMAEx_1210", + "429", + "UTHSC_SPL_RMAEx_1210", "UTHSC Affy MoGene 1.0 ST Spleen (Dec10) RMA Exon Level" - ], + ], [ - "271", - "UTHSC_SPL_RMA_1010", + "271", + "UTHSC_SPL_RMA_1010", "UTHSC Affy MoGene 1.0 ST Spleen (Oct10) RMA" - ], + ], [ - "260", - "UTK_BXDSpl_VST_0110", + "260", + "UTK_BXDSpl_VST_0110", "UTK Spleen ILM6.1 (Jan10) VST" - ], + ], [ - "227", - "IoP_SPL_RMA_0509", + "227", + "IoP_SPL_RMA_0509", "IoP Affy MOE 430v2 Spleen (May09) RMA" ] - ], + ], "Striatum mRNA": [ [ - "399", - "Striatum_Exon_1212", + "399", + "Striatum_Exon_1212", "HQF Striatum Affy Mouse Exon 1.0ST Gene Level (Dec09) RMA" - ], + ], [ - "163", - "Striatum_Exon_0209", + "163", + "Striatum_Exon_0209", "HQF Striatum Affy Mouse Exon 1.0ST Exon Level (Dec09) RMA" - ], + ], [ - "376", - "DevStriatum_ILM6.2P3RInv_1111", + "376", + "DevStriatum_ILM6.2P3RInv_1111", "BIDMC/UTHSC Dev Striatum P3 ILMv6.2 (Nov11) RankInv" - ], + ], [ - "377", - "DevStriatum_ILM6.2P14RInv_1111", + "377", + "DevStriatum_ILM6.2P14RInv_1111", "BIDMC/UTHSC Dev Striatum P14 ILMv6.2 (Nov11) RankInv" - ], + ], [ - "285", - "UTHSC_Striatum_RankInv_1210", + "285", + "UTHSC_Striatum_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10v2) RankInv" - ], + ], [ - "298", - "UTHSC_Str_RankInv_1210", + "298", + "UTHSC_Str_RankInv_1210", "HQF BXD Striatum ILM6.1 (Dec10) RankInv" - ], + ], [ - "152", - "UTHSC_1107_RankInv", + "152", + "UTHSC_1107_RankInv", "HQF BXD Striatum ILM6.1 (Nov07) RankInv" - ], + ], [ - "74", - "SA_M2_0405_MC", + "74", + "SA_M2_0405_MC", "HBP Rosen Striatum M430V2 (Apr05) MAS5 Clean" - ], + ], [ - "69", - "SA_M2_0405_RC", + "69", + "SA_M2_0405_RC", "HBP Rosen Striatum M430V2 (Apr05) RMA Clean" - ], + ], [ - "68", - "SA_M2_0405_PC", + "68", + "SA_M2_0405_PC", "HBP Rosen Striatum M430V2 (Apr05) PDNN Clean" - ], + ], [ - "67", - "SA_M2_0405_SS", + "67", + "SA_M2_0405_SS", "HBP Rosen Striatum M430V2 (Apr05) SScore" - ], + ], [ - "66", - "SA_M2_0405_RR", + "66", + "SA_M2_0405_RR", "HBP Rosen Striatum M430V2 (Apr05) RMA Orig" ] - ], + ], "T Cell (helper) mRNA": [ [ - "319", - "RTHC_0211_R", + "319", + "RTHC_0211_R", "HZI Thelp M430v2 (Feb11) RMA" ] - ], + ], "T Cell (regulatory) mRNA": [ [ - "122", - "RTC_1106_R", + "122", + "RTC_1106_R", "HZI Treg M430v2 (Feb11) RMA" ] - ], + ], "Ventral Tegmental Area mRNA": [ [ - "228", - "VCUSal_0609_R", + "228", + "VCUSal_0609_R", "VCU BXD VTA Sal M430 2.0 (Jun09) RMA" - ], + ], [ - "230", - "VCUEtvsSal_0609_R", + "230", + "VCUEtvsSal_0609_R", "VCU BXD VTA Et vs Sal M430 2.0 (Jun09) RMA" - ], + ], [ - "229", - "VCUEtOH_0609_R", + "229", + "VCUEtOH_0609_R", "VCU BXD VTA EtOH M430 2.0 (Jun09) RMA" ] ] - }, + }, "BXD-Bone": { "Phenotypes": [ [ - "650", - "BXD-BonePublish", + "650", + "BXD-BonePublish", "BXD-Bone Phenotypes" ] ] - }, + }, "BXD-Harvested": { "Genotypes": [ [ - "None", - "BXD-HarvestedGeno", + "None", + "BXD-HarvestedGeno", "BXD-Harvested Genotypes" ] - ], + ], "Hippocampus mRNA": [ [ - "873", - "JAX-BXD-Hip-Pro-0219", + "873", + "JAX-BXD-Hip-Pro-0219", "JAX BXD Hippocampal Proteome (Feb19)" ] - ], + ], "Liver mRNA": [ [ - "877", - "UTHSC-BXD-Harv_Liv-1019", + "877", + "UTHSC-BXD-Harv_Liv-1019", "UTHSC BXD Harvested Liver RNA-Seq (Oct19) TPM Log2" - ], + ], [ - "843", - "UTHSC-BXD-Harv_Liv-0118", + "843", + "UTHSC-BXD-Harv_Liv-0118", "UTHSC BXD Harvested Liver RNA-Seq (Aug18) Log2" ] - ], + ], "Phenotypes": [ [ - "None", - "BXD-HarvestedPublish", + "None", + "BXD-HarvestedPublish", "BXD-NIA-Longevity Phenotypes" ] ] - }, + }, "BXD300": { "Genotypes": [ [ - "None", - "BXD300Geno", + "None", + "BXD300Geno", "BXD300 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "105", - "LV_G_0106_B", + "105", + "LV_G_0106_B", "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Both Sexes" - ], + ], [ - "103", - "LV_G_0106_M", + "103", + "LV_G_0106_M", "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Males" - ], + ], [ - "104", - "LV_G_0106_F", + "104", + "LV_G_0106_F", "UNC Agilent G4121A Liver LOWESS Stanford (Jan06) Females" ] - ], + ], "Phenotypes": [ [ - "None", - "BXD300Publish", + "None", + "BXD300Publish", "BXD300 Phenotypes" ] ] - }, + }, "BXH": { "Bone Femur mRNA": [ [ - "412", - "UCLA_BXH_Femur_0113_RSN", + "412", + "UCLA_BXH_Femur_0113_RSN", "UCLA GSE27483 BXH Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] - ], + ], "Cartilage mRNA": [ [ - "209", - "UCLA_BXHBXD_CARTILAGE_V2", + "209", + "UCLA_BXHBXD_CARTILAGE_V2", "UCLA BXH and BXD Cartilage v2" - ], + ], [ - "205", - "UCLA_BXHBXD_CARTILAGE", + "205", + "UCLA_BXHBXD_CARTILAGE", "UCLA BXH and BXD Cartilage" - ], + ], [ - "179", - "UCLA_BXH_CARTILAGE", + "179", + "UCLA_BXH_CARTILAGE", "UCLA BXH Cartilage" ] - ], + ], "Genotypes": [ [ - "638", - "BXHGeno", + "638", + "BXHGeno", "BXH Genotypes" ] - ], + ], "Liver mRNA": [ [ - "353", - "GSE16780BXH_UCLA_ML0911", + "353", + "GSE16780BXH_UCLA_ML0911", "GSE16780 UCLA Mouse BXH Liver Affy HT M430A (Sep11) RMA" ] - ], + ], "Phenotypes": [ [ - "627", - "BXHPublish", + "627", + "BXHPublish", "BXH Published Phenotypes" ] ] - }, + }, "C57BL-6JxC57BL-6NJF2": { "Genotypes": [ [ - "622", - "C57BL-6JxC57BL-6NJF2Geno", + "622", + "C57BL-6JxC57BL-6NJF2Geno", "C57BL-6JxC57BL-6NJF2 Genotypes" ] - ], + ], "Phenotypes": [ [ - "620", - "C57BL-6JxC57BL-6NJF2Publish", + "620", + "C57BL-6JxC57BL-6NJF2Publish", "C57BL/6JxC57BL/6NJ F2 CROSS Phenotypes" ] ] - }, + }, "CFW": { "Hippocampus mRNA": [ [ - "811", - "UCSD_CFW_HIP_RNA-Seq_log2_0117", + "811", + "UCSD_CFW_HIP_RNA-Seq_log2_0117", "UCSD CFW Hippocampus (Jan17) RNA-Seq Log2 Z-score" - ], + ], [ - "808", - "UCSD_CFW_HIP_RNA-Seq_0117", + "808", + "UCSD_CFW_HIP_RNA-Seq_0117", "UCSD CFW Hippocampus RNA-Seq (Jan17) FPKM Quantile" ] - ], + ], "Phenotypes": [ [ - "None", - "CFWPublish", + "None", + "CFWPublish", "CFW Phenotypes" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "813", - "UCSD_CFW_PFC_RNA-Seq_log2_0117", + "813", + "UCSD_CFW_PFC_RNA-Seq_log2_0117", "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq Log2 Z-score" - ], + ], [ - "810", - "UCSD_CFW_PFC_RNA-Seq_0117", + "810", + "UCSD_CFW_PFC_RNA-Seq_0117", "UCSD CFW Prefrontal Cortex (Jan17) RNA-Seq" ] - ], + ], "Striatum mRNA": [ [ - "812", - "UCSD_CFW_STR_RNA-Seq_log2_0117", + "812", + "UCSD_CFW_STR_RNA-Seq_log2_0117", "UCSD CFW Striatum (Jan17) RNA-Seq Log2 Z-score" - ], + ], [ - "809", - "UCSD_CFW_SPL_RNA-Seq_0117", + "809", + "UCSD_CFW_SPL_RNA-Seq_0117", "UCSD CFW Striatum (Jan17) RNA-Seq" ] ] - }, + }, "CIE-INIA": { "LCM Brain Regions mRNA": [ [ - "776", - "INIA_LCM_CAB_1215", + "776", + "INIA_LCM_CAB_1215", "INIA LCM (11 Regions) CIE/AIR/BAS RNA-seq Transcript Level (Dec15)" - ], + ], [ - "772", - "INIA_LCM_1215", + "772", + "INIA_LCM_1215", "INIA LCM (11 Regions) CIE/AIR RNA-seq Transcript Level (Dec15)" - ], + ], [ - "775", - "INIA_LCMB_1215", + "775", + "INIA_LCMB_1215", "INIA LCM (11 Regions) BASELINE RNA-seq Transcript Level (Dec15)" ] - ], + ], "Phenotypes": [ [ - "None", - "CIE-INIAPublish", + "None", + "CIE-INIAPublish", "CIE-INIA Phenotypes" ] ] - }, + }, "CIE-RMA": { "Hippocampus mRNA": [ [ - "831", - "INIA_UTHSC_Hip_AffyMTA1_May17", + "831", + "INIA_UTHSC_Hip_AffyMTA1_May17", "INIA-UTHSC Hippocampus CIE Affy MTA 1.0 GeneLevel (Mar18) RMA" ] - ], + ], "Midbrain mRNA": [ [ - "830", - "INIA_UTHSC_Mid_AffyMTA1_Apr17", + "830", + "INIA_UTHSC_Mid_AffyMTA1_Apr17", "INIA-UTHSC Midbrain CIE Affy MTA 1.0 GeneLevel (Apr17) RMA" - ], + ], [ - "834", - "INIA_UTHSC_Mid_AffyMTA1_Ex_May17", + "834", + "INIA_UTHSC_Mid_AffyMTA1_Ex_May17", "INIA-UTHSC Midbrain CIE Affy MTA 1.0 Exon Level (Apr17) RMA" ] - ], + ], "Phenotypes": [ [ - "None", - "CIE-RMAPublish", + "None", + "CIE-RMAPublish", "CIE-RMA Phenotypes" ] ] - }, + }, "CMS": { "Phenotypes": [ [ - "None", - "CMSPublish", + "None", + "CMSPublish", "CMS Phenotypes" ] ] - }, + }, "CTB6F2": { "Adipose mRNA": [ [ - "170", - "UCLA_CTB6B6CTF2_ADIPOSE_2005", + "170", + "UCLA_CTB6B6CTF2_ADIPOSE_2005", "UCLA CTB6/B6CTF2 Adipose (2005) mlratio" - ], + ], [ - "189", - "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", + "189", + "UCLA_CTB6B6CTF2_ADIPOSE_FEMALE", "UCLA CTB6B6CTF2 Adipose Female mlratio" - ], + ], [ - "188", - "UCLA_CTB6B6CTF2_ADIPOSE_MALE", + "188", + "UCLA_CTB6B6CTF2_ADIPOSE_MALE", "UCLA CTB6B6CTF2 Adipose Male mlratio" ] - ], + ], "Brain mRNA": [ [ - "171", - "UCLA_CTB6B6CTF2_BRAIN_2005", + "171", + "UCLA_CTB6B6CTF2_BRAIN_2005", "UCLA CTB6/B6CTF2 Brain (2005) mlratio" - ], + ], [ - "190", - "UCLA_CTB6B6CTF2_BRAIN_MALE", + "190", + "UCLA_CTB6B6CTF2_BRAIN_MALE", "UCLA CTB6/B6CTF2 Brain Males (2005) mlratio" - ], + ], [ - "191", - "UCLA_CTB6B6CTF2_BRAIN_FEMALE", + "191", + "UCLA_CTB6B6CTF2_BRAIN_FEMALE", "UCLA CTB6/B6CTF2 Brain Females (2005) mlratio" ] - ], + ], "Genotypes": [ [ - "None", - "CTB6F2Geno", + "None", + "CTB6F2Geno", "CTB6F2 Genotypes" ] - ], + ], "Liver mRNA": [ [ - "172", - "UCLA_CTB6B6CTF2_LIVER_2005", + "172", + "UCLA_CTB6B6CTF2_LIVER_2005", "UCLA CTB6/B6CTF2 Liver (2005) mlratio" - ], + ], [ - "193", - "UCLA_CTB6B6CTF2_LIVER_FEMALE", + "193", + "UCLA_CTB6B6CTF2_LIVER_FEMALE", "UCLA CTB6B6CTF2 Liver Female mlratio" - ], + ], [ - "192", - "UCLA_CTB6B6CTF2_LIVER_MALE", + "192", + "UCLA_CTB6B6CTF2_LIVER_MALE", "UCLA CTB6B6CTF2 Liver Male mlratio" ] - ], + ], "Muscle mRNA": [ [ - "173", - "UCLA_CTB6B6CTF2_MUSCLE_2005", + "173", + "UCLA_CTB6B6CTF2_MUSCLE_2005", "UCLA CTB6/B6CTF2 Muscle (2005) mlratio" - ], + ], [ - "195", - "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", + "195", + "UCLA_CTB6B6CTF2_MUSCLE_FEMALE", "UCLA CTB6B6CTF2 Muscle Female mlratio" - ], + ], [ - "194", - "UCLA_CTB6B6CTF2_MUSCLE_MALE", + "194", + "UCLA_CTB6B6CTF2_MUSCLE_MALE", "UCLA CTB6B6CTF2 Muscle Male mlratio" ] - ], + ], "Phenotypes": [ [ - "630", - "CTB6F2Publish", + "630", + "CTB6F2Publish", "CastB6/B6Cast F2 UCLA Published Phenotypes" ] ] - }, + }, "CXB": { "Genotypes": [ [ - "614", - "CXBGeno", + "614", + "CXBGeno", "CXB Genotypes" ] - ], + ], "Heart mRNA": [ [ - "821", - "UCLA_CXB_Aor_Jan16", + "821", + "UCLA_CXB_Aor_Jan16", "UCLA CXB Aorta Affy M430 2.0 (Jan16) RMA" ] - ], + ], "Hippocampus mRNA": [ [ - "99", - "HC_M2CB_1205_P", + "99", + "HC_M2CB_1205_P", "Hippocampus Consortium M430v2 CXB (Dec05) PDNN" - ], + ], [ - "100", - "HC_M2CB_1205_R", + "100", + "HC_M2CB_1205_R", "Hippocampus Consortium M430v2 CXB (Dec05) RMA" ] - ], + ], "Liver mRNA": [ [ - "823", - "UCLA_CXB_Liv_Jan16", + "823", + "UCLA_CXB_Liv_Jan16", "UCLA CXB Liver Affy M430 2.0 (Jan16) RMA" ] - ], + ], "Phenotypes": [ [ - "628", - "CXBPublish", + "628", + "CXBPublish", "CXB Published Phenotypes" ] - ], + ], "Spleen mRNA": [ [ - "153", - "STSPL_1107_R", + "153", + "STSPL_1107_R", "Stuart Spleen M430v2 (Nov07) RMA" ] ] - }, + }, "D2GM": { "Phenotypes": [ [ - "None", - "D2GMPublish", + "None", + "D2GMPublish", "D2GM Phenotypes" ] - ], + ], "Retina mRNA": [ [ - "847", - "JAX_D2GM_RSeq_log2Z_0418", + "847", + "JAX_D2GM_RSeq_log2Z_0418", "JAX Retina (Apr18) RNA-Seq log2-Z" ] ] - }, + }, "HS": { "Hippocampus mRNA": [ [ - "268", - "OXUKHS_ILMHipp_RI0510", + "268", + "OXUKHS_ILMHipp_RI0510", "OX UK HS ILM6v1.1 Hippocampus (May 2010) RankInv" ] - ], + ], "Liver mRNA": [ [ - "269", - "OXUKHS_ILMLiver_RI0510", + "269", + "OXUKHS_ILMLiver_RI0510", "OX UK HS ILM6v1.1 Liver (May 2010) RankInv" ] - ], + ], "Lung mRNA": [ [ - "270", - "OXUKHS_ILMLung_RI0510", + "270", + "OXUKHS_ILMLung_RI0510", "OX UK HS ILM6v1.1 Lung (May 2010) RankInv" ] - ], + ], "Phenotypes": [ [ - "624", - "HSPublish", + "624", + "HSPublish", "Heterogeneous Stock Phenotypes" ] ] - }, + }, "HS-CC": { "Striatum mRNA": [ [ - "304", - "OHSU_HS-CC_ILMStr_0211", + "304", + "OHSU_HS-CC_ILMStr_0211", "OHSU HS-CC Striatum ILM6v1 (Feb11) RankInv" ] ] - }, + }, "LXS": { "Genotypes": [ [ - "601", - "LXSGeno", + "601", + "LXSGeno", "LXS Genotypes" ] - ], + ], "Hippocampus mRNA": [ [ - "211", - "Illum_LXS_Hipp_RSS_1008", + "211", + "Illum_LXS_Hipp_RSS_1008", "Hippocampus Illumina RSS (Oct08) RankInv beta" - ], + ], [ - "213", - "Illum_LXS_Hipp_NOS_1008", + "213", + "Illum_LXS_Hipp_NOS_1008", "Hippocampus Illumina NOS (Oct08) RankInv beta" - ], + ], [ - "219", - "Illum_LXS_Hipp_NON_1008", + "219", + "Illum_LXS_Hipp_NON_1008", "Hippocampus Illumina NON (Oct08) RankInv beta" - ], + ], [ - "212", - "Illum_LXS_Hipp_RSE_1008", + "212", + "Illum_LXS_Hipp_RSE_1008", "Hippocampus Illumina RSE (Oct08) RankInv beta" - ], + ], [ - "214", - "Illum_LXS_Hipp_NOE_1008", + "214", + "Illum_LXS_Hipp_NOE_1008", "Hippocampus Illumina NOE (Oct08) RankInv beta" - ], + ], [ - "143", - "Illum_LXS_Hipp_loess0807", + "143", + "Illum_LXS_Hipp_loess0807", "Hippocampus Illumina (Aug07) LOESS" - ], + ], [ - "142", - "Illum_LXS_Hipp_loess_nb0807", + "142", + "Illum_LXS_Hipp_loess_nb0807", "Hippocampus Illumina (Aug07) LOESS_NB" - ], + ], [ - "141", - "Illum_LXS_Hipp_quant0807", + "141", + "Illum_LXS_Hipp_quant0807", "Hippocampus Illumina (Aug07) QUANT" - ], + ], [ - "140", - "Illum_LXS_Hipp_quant_nb0807", + "140", + "Illum_LXS_Hipp_quant_nb0807", "Hippocampus Illumina (Aug07) QUANT_NB" - ], + ], [ - "139", - "Illum_LXS_Hipp_rsn0807", + "139", + "Illum_LXS_Hipp_rsn0807", "Hippocampus Illumina (Aug07) RSN" - ], + ], [ - "138", - "Illum_LXS_Hipp_rsn_nb0807", + "138", + "Illum_LXS_Hipp_rsn_nb0807", "Hippocampus Illumina (Aug07) RSN_NB" - ], + ], [ - "133", - "Hipp_Illumina_RankInv_0507", + "133", + "Hipp_Illumina_RankInv_0507", "Hippocampus Illumina (May07) RankInv" ] - ], + ], "Phenotypes": [ [ - "606", - "LXSPublish", + "606", + "LXSPublish", "LXS Published Phenotypes" ] - ], + ], "Prefrontal Cortex mRNA": [ [ - "130", - "VCUSal_0806_R", + "130", + "VCUSal_0806_R", "VCU LXS PFC Sal M430A 2.0 (Aug06) RMA" ] ] - }, + }, "Linsenbardt-Boehm": { "Genotypes": [ [ - "None", - "Linsenbardt-BoehmGeno", + "None", + "Linsenbardt-BoehmGeno", "Linsenbardt-Boehm Genotypes" ] - ], + ], "Phenotypes": [ [ - "645", - "Linsenbardt-BoehmPublish", + "645", + "Linsenbardt-BoehmPublish", "Linsenbardt-Boehm Published Phenotypes" ] ] - }, + }, "MDP": { "Bone Femur mRNA": [ [ - "413", - "UCLA_MDP_Femur_0113_RSN", + "413", + "UCLA_MDP_Femur_0113_RSN", "UCLA GSE27483 MDP Bone Femur ILM Mouse WG-6 v1, v1.1 (Jan13) RSN" ] - ], + ], "Dorsal Root Ganglia mRNA": [ [ - "402", - "TSRI-DRG-AffyMOE430_0113-MDP", + "402", + "TSRI-DRG-AffyMOE430_0113-MDP", "TSRI DRG Affy Mouse Genome 430 2.0 (Jan13) RMA MDP" ] - ], + ], "Genotypes": [ [ - "609", - "MDPGeno", + "609", + "MDPGeno", "MDP Genotypes" ] - ], + ], "Hippocampus mRNA": [ [ - "272", - "HC_M2_0606_MDP", + "272", + "HC_M2_0606_MDP", "Hippocampus Consortium M430v2 (Jun06) RMA MDP" - ], + ], [ - "273", - "UMUTAffyExon_0209_RMA_MDP", + "273", + "UMUTAffyExon_0209_RMA_MDP", "UMUTAffy Hippocampus Exon (Feb09) RMA MDP" ] - ], + ], "Liver mRNA": [ [ - "370", - "GSE16780MDP_UCLA_ML0911", + "370", + "GSE16780MDP_UCLA_ML0911", "GSE16780 UCLA Mouse MDP Liver Affy HT M430A (Sep11) RMA" - ], + ], [ - "357", - "JAX_CSB_L_0711", + "357", + "JAX_CSB_L_0711", "JAX Liver Affy M430 2.0 (Jul11) MDP" - ], + ], [ - "358", - "JAX_CSB_L_HF_0711", + "358", + "JAX_CSB_L_HF_0711", "JAX Liver HF Affy M430 2.0 (Jul11) MDP" - ], + ], [ - "359", - "JAX_CSB_L_6C_0711", + "359", + "JAX_CSB_L_6C_0711", "JAX Liver 6C Affy M430 2.0 (Jul11) MDP" - ], + ], [ - "403", - "JAX_liver_agil_MDP-0113", + "403", + "JAX_liver_agil_MDP-0113", "Harrill-Rusyn MDP Liver Acetaminophen Tox Study (G4121A, 2009)" ] - ], + ], "Phenotypes": [ [ - "605", - "MDPPublish", + "605", + "MDPPublish", "Mouse Phenome Database" ] - ], + ], "Spleen mRNA": [ [ - "801", - "HMS_mm8_MDP_Spl_CD4_1116", + "801", + "HMS_mm8_MDP_Spl_CD4_1116", "HMS Spleen CD4+ T cells MDP Affy Mouse Gene 1.0 ST (Jul16) Gene Level" ] ] - }, + }, "NZBXFVB-N2": { "Mammary Tumors mRNA": [ [ - "225", - "NCI_Mam_Tum_RMA_0409", + "225", + "NCI_Mam_Tum_RMA_0409", "NCI Mammary M430v2 (Apr09) RMA" ] - ], + ], "Phenotypes": [ [ - "607", - "NZBXFVB-N2Publish", + "607", + "NZBXFVB-N2Publish", "NZBXFVB-N2 Published Phenotypes" ] ] - }, + }, "Retina-RGC-Rheaume": { "Phenotypes": [ [ - "None", - "Retina-RGC-RheaumePublish", + "None", + "Retina-RGC-RheaumePublish", "Retina-RGC-Rheaume Phenotypes" ] - ], + ], "Retina Single-cell RNA-Seq": [ [ - "865", - "UConn-RGC-RSeq_r-0918", + "865", + "UConn-RGC-RSeq_r-0918", "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Raw" - ], + ], [ - "866", - "UConn-RGC-RSeq_log2-0918", + "866", + "UConn-RGC-RSeq_log2-0918", "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Log2" - ], + ], [ - "867", - "UConn-RGC-RSeq_s-0918", + "867", + "UConn-RGC-RSeq_s-0918", "UConn-Rheaume Retina RGC (Sep18) scRNA-Seq Siamak" ] ] - }, + }, "SOTNOT-OHSU": { "Genotypes": [ [ - "613", - "SOTNOT-OHSUGeno", + "613", + "SOTNOT-OHSUGeno", "SOTNOT-OHSU Genotypes" ] ] } - }, + }, "poplar": { "Poplar": { "Phenotypes": [ [ - "649", - "PoplarPublish", + "649", + "PoplarPublish", "Poplar Phenotypes" ] ] } - }, + }, "rat": { + "HRDP": { + "Genotypes": [ + [ + "None", + "HRDPGeno", + "HRDP Genotypes" + ] + ], + "Phenotypes": [ + [ + "None", + "HRDPPublish", + "HRDP Phenotypes" + ] + ] + }, "HSNIH-Palmer": { "Infralimbic Cortex mRNA": [ [ - "861", - "HSNIH-Rat-IL-RSeq-0818", + "861", + "HSNIH-Rat-IL-RSeq-0818", "HSNIH-Palmer Infralimbic Cortex RNA-Seq (Aug18) rlog" ] - ], + ], "Lateral Habenula mRNA": [ [ - "862", - "HSNIH-Rat-LHB-RSeq-0818", + "862", + "HSNIH-Rat-LHB-RSeq-0818", "HSNIH-Palmer Lateral Habenula RNA-Seq (Aug18) rlog" ] - ], + ], "Nucleus Accumbens mRNA": [ [ - "860", - "HSNIH-Rat-Acbc-RSeq-0818", + "860", + "HSNIH-Rat-Acbc-RSeq-0818", "HSNIH-Palmer Nucleus Accumbens Core RNA-Seq (Aug18) rlog" ] - ], + ], "Orbitofrontal Cortex mRNA": [ [ - "864", - "HSNIH-Rat-VoLo-RSeq-0818", + "864", + "HSNIH-Rat-VoLo-RSeq-0818", "HSNIH-Palmer Orbitofrontal Cortex RNA-Seq (Aug18) rlog" ] - ], + ], "Phenotypes": [ [ - "652", - "HSNIH-PalmerPublish", + "652", + "HSNIH-PalmerPublish", "HSNIH Phenotypes" ] - ], + ], "Prelimbic Cortex mRNA": [ [ - "863", - "HSNIH-Rat-PL-RSeq-0818", + "863", + "HSNIH-Rat-PL-RSeq-0818", "HSNIH-Palmer Prelimbic Cortex RNA-Seq (Aug18) rlog" ] ] - }, + }, "HSNIH-RGSMC": { "Phenotypes": [ [ - "None", - "HSNIH-RGSMCPublish", + "None", + "HSNIH-RGSMCPublish", "HSNIH Published Phenotypes" ] ] - }, + }, "HXBBXH": { "Adipose mRNA": [ [ - "799", - "FGUCAS_BAdip0516", + "799", + "FGUCAS_BAdip0516", "FGUCAS BXH/HXB Brown Adipose Affy Rat Gene 2.0 ST (May16) log2" ] - ], + ], "Adrenal Gland mRNA": [ [ - "220", - "HXB_Adrenal_1208", + "220", + "HXB_Adrenal_1208", "MDC/CAS/UCL Adrenal 230A (Dec08) RMA" ] - ], + ], "Genotypes": [ [ - "None", - "HXBBXHGeno", + "None", + "HXBBXHGeno", "HXBBXH Genotypes" ] - ], + ], "Heart mRNA": [ [ - "221", - "HXB_Heart_1208", + "221", + "HXB_Heart_1208", "MDC/CAS/UCL Heart 230_V2 (Dec08) RMA" ] - ], + ], "Hippocampus mRNA": [ [ - "231", - "UT_HippRatEx_RMA_0709", + "231", + "UT_HippRatEx_RMA_0709", "UT Hippocampus Affy RaEx 1.0 Exon (Jul09) RMA" ] - ], + ], "Kidney mRNA": [ [ - "70", - "KI_2A_0405_M", + "70", + "KI_2A_0405_M", "MDC/CAS/ICL Kidney 230A (Apr05) MAS5" - ], + ], [ - "65", - "KI_2A_0405_Rz", + "65", + "KI_2A_0405_Rz", "MDC/CAS/ICL Kidney 230A (Apr05) RMA 2z+8" - ], + ], [ - "64", - "KI_2A_0405_R", + "64", + "KI_2A_0405_R", "MDC/CAS/ICL Kidney 230A (Apr05) RMA" ] - ], + ], "Liver mRNA": [ [ - "222", - "HXB_Liver_1208", + "222", + "HXB_Liver_1208", "MDC/CAS/UCL Liver 230v2 (Dec08) RMA" ] - ], + ], "Peritoneal Fat mRNA": [ [ - "79", - "FT_2A_0805_M", + "79", + "FT_2A_0805_M", "MDC/CAS/ICL Peritoneal Fat 230A (Aug05) MAS5" - ], + ], [ - "75", - "FT_2A_0605_Rz", + "75", + "FT_2A_0605_Rz", "MDC/CAS/ICL Peritoneal Fat 230A (Jun05) RMA 2z+8" ] - ], + ], "Phenotypes": [ [ - "632", - "HXBBXHPublish", + "632", + "HXBBXHPublish", "HXB/BXH Published Phenotypes" ] ] - }, + }, "SRxSHRSPF2": { "Eye mRNA": [ [ - "226", - "UIOWA_Eye_RMA_0906", + "226", + "UIOWA_Eye_RMA_0906", "UIOWA Eye mRNA RAE230v2 (Sep06) RMA" ] ] } - }, + }, "soybean": { "J12XJ58F11": { "Genotypes": [ [ - "None", - "J12XJ58F11Geno", + "None", + "J12XJ58F11Geno", "J12XJ58F11 Genotypes" ] - ], + ], "Phenotypes": [ [ - "647", - "J12XJ58F11Publish", + "647", + "J12XJ58F11Publish", "J12XJ58F11 Phenotypes" ] ] - }, + }, "J12XJ58F2": { "Phenotypes": [ [ - "616", - "J12XJ58F2Publish", + "616", + "J12XJ58F2Publish", "J12XJ58F2 Published Phenotypes" ] ] } - }, + }, "tomato": { "LXP": { "Phenotypes": [ [ - "621", - "LXPPublish", + "621", + "LXPPublish", "LXP Published Phenotypes" ] ] } } - }, + }, "groups": { - "All Species": [ - [ - "All Groups", - "All Groups" - ] - ], "arabidopsis": [ [ - "BayXSha", + "BayXSha", "BayXSha" - ], + ], [ - "ColXBur", + "ColXBur", "ColXBur" - ], + ], [ - "ColXCvi", + "ColXCvi", "ColXCvi" ] - ], + ], "barley": [ [ - "QSM", + "QSM", "QSM" - ], + ], [ - "SXM", + "SXM", "SXM" ] - ], + ], "drosophila": [ [ - "DGRP", + "DGRP", "Drosophila Genetic Reference Panel" - ], + ], [ - "Oregon-R_x_2b3", + "Oregon-R_x_2b3", "Oregon-R x 2b3" ] - ], + ], "human": [ [ - "HB", + "HB", "Brain, Aging: AD, HD, Normal Gene Expression (Harvard/Merck)" - ], + ], [ - "AD-cases-controls", + "AD-cases-controls", "Brain, Aging: AD, Normal Gene Expression (Liang)" - ], + ], [ - "AD-cases-controls-Myers", + "AD-cases-controls-Myers", "Brain, Aging: AD, Normal Gene Expression with Genotypes (Myers)" - ], + ], [ - "Aging-Brain-UCI", + "Aging-Brain-UCI", "Brain, Aging: Normal Gene Expression (UCI/Cotman)" - ], + ], [ - "HCP", + "HCP", "Brain, Cognition, Human Connectome Project" - ], + ], [ - "HSB", + "HSB", "Brain, Development: Normal Gene Expression (Yale/Sestan)" - ], + ], [ - "Brain-Normal-NIH-Gibbs", + "Brain-Normal-NIH-Gibbs", "Brain: Normal Gene Expression (NIH/Gibbs)" - ], + ], [ - "CANDLE", + "CANDLE", "Child Development: CANDLE Cohort with Genotypes (TUCI/UTHSC)" - ], + ], [ - "GTEx", + "GTEx", "GTEx v3 All Tissues, RNA-Seq with Genotypes" - ], + ], [ - "GTEx_v5", + "GTEx_v5", "GTEx v5 All Tissues, RNA-Seq with Genotypes" - ], + ], [ - "HLC", + "HLC", "Liver: Normal Gene Expression with Genotypes (Merck)" - ], + ], [ - "HLT", + "HLT", "Lung: Normal Gene Expression (Merck)" - ], + ], [ - "CEPH-2004", + "CEPH-2004", "Lymphoblastoid Cells: Gene Expression (CEPH, Williams)" - ], + ], [ - "Islets-Gerling", + "Islets-Gerling", "Pancreatic: Islets (UTHSC/Gerling)" - ], + ], [ - "TIGEM-Retina-RNA-Seq", + "TIGEM-Retina-RNA-Seq", "Retina: Normal Adult Gene Expression, RNA-Seq (TIGEM)" ] - ], + ], "mouse": [ [ - "AIL", + "AIL", "AIL Advanced Intercross Line" - ], + ], [ - "AIL-LGSM-F34-A", + "AIL-LGSM-F34-A", "AIL LGSM F34 (Array)" - ], + ], [ - "AIL-LGSM-F34-GBS", + "AIL-LGSM-F34-GBS", "AIL LGSM F34 (GBS)" - ], + ], [ - "AIL-LGSM-F34-F39-43-GBS", + "AIL-LGSM-F34-F39-43-GBS", "AIL LGSM F34 and F39-43 (GBS)" - ], + ], [ - "AIL-LGSM-F39-43-GBS", + "AIL-LGSM-F39-43-GBS", "AIL LGSM F39-43 (GBS)" - ], + ], [ - "AKXD", + "AKXD", "AKXD RI Family" - ], + ], [ - "AXBXA", + "AXBXA", "AXB/BXA RI Family" - ], + ], [ - "B6BTBRF2", + "B6BTBRF2", "B6BTBRF2" - ], + ], [ - "Linsenbardt-Boehm", + "Linsenbardt-Boehm", "B6D2 EtOH Selected Advanced Intercross" - ], + ], [ - "B6D2F2", + "B6D2F2", "B6D2F2" - ], + ], [ - "B6D2F2-PSU", + "B6D2F2-PSU", "B6D2F2 PSU" - ], + ], [ - "BDF2-1999", + "BDF2-1999", "BDF2 UCLA" - ], + ], [ - "BDF2-2005", + "BDF2-2005", "BDF2-2005" - ], + ], [ - "BHHBF2", + "BHHBF2", "BH/HB F2 UCLA" - ], + ], [ - "BHF2", + "BHF2", "BHF2 (Apoe Null) UCLA" - ], + ], [ - "B6D2RI", + "B6D2RI", "BXD Aged" - ], + ], [ - "BXD-Bone", + "BXD-Bone", "BXD Bone Individual Data" - ], + ], [ - "BXD-Harvested", + "BXD-Harvested", "BXD NIA Longevity Study" - ], + ], [ - "BXD", + "BXD", "BXD RI Family" - ], + ], [ - "BXD300", + "BXD300", "BXD300" - ], + ], [ - "BXH", + "BXH", "BXH RI Family" - ], + ], [ - "CTB6F2", + "CTB6F2", "CastB6/B6Cast F2 UCLA" - ], + ], [ - "CFW", + "CFW", "CFW Outbred GWAS" - ], + ], [ - "CIE-INIA", + "CIE-INIA", "Chronic Intermittent Ethanol Phase 1" - ], + ], [ - "CIE-RMA", + "CIE-RMA", "Chronic Intermittent Ethanol Phase 2" - ], + ], [ - "CMS", + "CMS", "Chronic Mild Stress" - ], + ], [ - "CXB", + "CXB", "CXB RI Family (strain means)" - ], + ], [ - "D2GM", + "D2GM", "D2 Glaucoma Model" - ], + ], [ - "B6D2", + "B6D2", "Glaucoma and Aged Retina, UTHSC" - ], + ], [ - "HS", + "HS", "Heterogeneous Stock" - ], + ], [ - "HS-CC", + "HS-CC", "Heterogeneous Stock Collaborative Cross" - ], + ], [ - "LXS", + "LXS", "ILSXISS (LXS) RI Family (strain means)" - ], + ], [ - "MDP", + "MDP", "Mouse Diversity Panel (strain means)" - ], + ], [ - "NZBXFVB-N2", + "NZBXFVB-N2", "NZB/FVB N2 NCI" - ], + ], [ - "C57BL-6JxC57BL-6NJF2", + "C57BL-6JxC57BL-6NJF2", "Reduced Complexity Cross (B6JxB6N F2)" - ], + ], [ - "Retina-RGC-Rheaume", + "Retina-RGC-Rheaume", "Retina RGC Rheaume" - ], + ], [ - "SOTNOT-OHSU", + "SOTNOT-OHSU", "SOTNOT-OHSU" ] - ], + ], "poplar": [ [ - "Poplar", + "Poplar", "Poplar" ] - ], + ], "rat": [ [ - "HXBBXH", + "HXBBXH", "HXB/BXH" - ], + ], + [ + "HRDP", + "Hybrid Rat Diversity Panel" + ], [ - "HSNIH-Palmer", + "HSNIH-Palmer", "NIH Heterogeneous Stock (Palmer)" - ], + ], [ - "HSNIH-RGSMC", + "HSNIH-RGSMC", "NIH Heterogeneous Stock (RGSMC 2013)" - ], + ], [ - "SRxSHRSPF2", + "SRxSHRSPF2", "UIOWA SRxSHRSP F2" ] - ], + ], "soybean": [ [ - "J12XJ58F11", + "J12XJ58F11", "J12XJ58F11" - ], + ], [ - "J12XJ58F2", + "J12XJ58F2", "J12XJ58F2" ] - ], + ], "tomato": [ [ - "LXP", + "LXP", "LXP" ] ] - }, + }, "species": [ [ - "human", + "human", "Human (hg19)" - ], + ], [ - "mouse", + "mouse", "Mouse (mm10)" - ], + ], [ - "rat", + "rat", "Rat (rn6)" - ], + ], [ - "drosophila", + "drosophila", "Drosophila" - ], + ], [ - "arabidopsis", + "arabidopsis", "Arabidopsis thaliana" - ], + ], [ - "barley", + "barley", "Barley" - ], + ], [ - "poplar", + "poplar", "Poplar" - ], + ], [ - "soybean", + "soybean", "Soybean" - ], + ], [ - "tomato", + "tomato", "Tomato" - ], - [ - "All Species", - "All Species" ] - ], + ], "types": { - "All Species": { - "All Groups": [ - [ - "Phenotypes", - "Phenotypes" - ] - ] - }, "arabidopsis": { "BayXSha": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "ColXBur": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "ColXCvi": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] ] - }, + }, "barley": { "QSM": [ [ - "Leaf mRNA", + "Leaf mRNA", "Leaf mRNA" ] - ], + ], "SXM": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Embryo mRNA", + "Embryo mRNA", "Embryo mRNA" - ], + ], [ - "Leaf mRNA", + "Leaf mRNA", "Leaf mRNA" ] ] - }, + }, "drosophila": { "DGRP": [ [ - "Whole Body mRNA", + "Whole Body mRNA", "Whole Body mRNA" ] - ], + ], "Oregon-R_x_2b3": [ [ - "Whole Body mRNA", + "Whole Body mRNA", "Whole Body mRNA" ] ] - }, + }, "human": { "AD-cases-controls": [ [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" ] - ], + ], "AD-cases-controls-Myers": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" ] - ], + ], "Aging-Brain-UCI": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Entorhinal Cortex mRNA", + "Entorhinal Cortex mRNA", "Entorhinal Cortex mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Postcentral Gyrus mRNA", + "Postcentral Gyrus mRNA", "Postcentral Gyrus mRNA" - ], + ], [ - "Superior Frontal Gyrus mRNA", + "Superior Frontal Gyrus mRNA", "Superior Frontal Gyrus mRNA" ] - ], + ], "Brain-Normal-NIH-Gibbs": [ [ - "Cerebellum mRNA", + "Cerebellum mRNA", "Cerebellum mRNA" - ], + ], [ - "Pons mRNA", + "Pons mRNA", "Pons mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" - ], + ], [ - "Temporal Cerebral Wall mRNA", + "Temporal Cerebral Wall mRNA", "Temporal Cerebral Wall mRNA" ] - ], + ], "CANDLE": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Newborn Cord Blood mRNA", + "Newborn Cord Blood mRNA", "Newborn Cord Blood mRNA" ] - ], + ], "CEPH-2004": [ [ - "Lymphoblast B-cell mRNA", + "Lymphoblast B-cell mRNA", "Lymphoblast B-cell mRNA" ] - ], + ], "GTEx": [ [ - "Adipose tissue, subcutaneous mRNA", + "Adipose tissue, subcutaneous mRNA", "Adipose tissue, subcutaneous mRNA" - ], + ], [ - "Adipose tissue, visceral mRNA", + "Adipose tissue, visceral mRNA", "Adipose tissue, visceral mRNA" - ], + ], [ - "Adrenal Gland mRNA", + "Adrenal Gland mRNA", "Adrenal Gland mRNA" - ], + ], [ - "Amygdala mRNA", + "Amygdala mRNA", "Amygdala mRNA" - ], + ], [ - "Anterior Cingulate Cortex mRNA", + "Anterior Cingulate Cortex mRNA", "Anterior Cingulate Cortex mRNA" - ], + ], [ - "Aorta mRNA", + "Aorta mRNA", "Aorta mRNA" - ], + ], [ - "Blood, Cells - EBV-Transformed Lymphocytes mRNA", + "Blood, Cells - EBV-Transformed Lymphocytes mRNA", "Blood, Cells - EBV-Transformed Lymphocytes mRNA" - ], + ], [ - "Breast - Mammary Tissue mRNA", + "Breast - Mammary Tissue mRNA", "Breast - Mammary Tissue mRNA" - ], + ], [ - "Caudate mRNA", + "Caudate mRNA", "Caudate mRNA" - ], + ], [ - "Cells - EBV-Transformed Lymphocytes mRNA", + "Cells - EBV-Transformed Lymphocytes mRNA", "Cells - EBV-Transformed Lymphocytes mRNA" - ], + ], [ - "Cells - Leukemia Cell Line (CML) mRNA", + "Cells - Leukemia Cell Line (CML) mRNA", "Cells - Leukemia Cell Line (CML) mRNA" - ], + ], [ - "Cells - Transformed Fibroblasts mRNA", + "Cells - Transformed Fibroblasts mRNA", "Cells - Transformed Fibroblasts mRNA" - ], + ], [ - "Cerebellar Cortex mRNA", + "Cerebellar Cortex mRNA", "Cerebellar Cortex mRNA" - ], + ], [ - "Cerebellar Hemisphere mRNA", + "Cerebellar Hemisphere mRNA", "Cerebellar Hemisphere mRNA" - ], + ], [ - "Cerebellum mRNA", + "Cerebellum mRNA", "Cerebellum mRNA" - ], + ], [ - "Colon - Transverse mRNA", + "Colon - Transverse mRNA", "Colon - Transverse mRNA" - ], + ], [ - "Coronary mRNA", + "Coronary mRNA", "Coronary mRNA" - ], + ], [ - "Esophagus - Mucosa mRNA", + "Esophagus - Mucosa mRNA", "Esophagus - Mucosa mRNA" - ], + ], [ - "Esophagus - Muscularis mRNA", + "Esophagus - Muscularis mRNA", "Esophagus - Muscularis mRNA" - ], + ], [ - "Fallopian Tube mRNA", + "Fallopian Tube mRNA", "Fallopian Tube mRNA" - ], + ], [ - "Frontal Cortex mRNA", + "Frontal Cortex mRNA", "Frontal Cortex mRNA" - ], + ], [ - "Heart - Atrial Appendage mRNA", + "Heart - Atrial Appendage mRNA", "Heart - Atrial Appendage mRNA" - ], + ], [ - "Heart - Left Ventricle mRNA", + "Heart - Left Ventricle mRNA", "Heart - Left Ventricle mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Hypothalamus mRNA", + "Hypothalamus mRNA", "Hypothalamus mRNA" - ], + ], [ - "Kidney mRNA", + "Kidney mRNA", "Kidney mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Lung mRNA", + "Lung mRNA", "Lung mRNA" - ], + ], [ - "Muscle mRNA", + "Muscle mRNA", "Muscle mRNA" - ], + ], [ - "Nerve - Tibial mRNA", + "Nerve - Tibial mRNA", "Nerve - Tibial mRNA" - ], + ], [ - "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA", "Nucleus Accumbens mRNA" - ], + ], [ - "Ovary mRNA", + "Ovary mRNA", "Ovary mRNA" - ], + ], [ - "Pancreas mRNA", + "Pancreas mRNA", "Pancreas mRNA" - ], + ], [ - "Pituitary Gland mRNA", + "Pituitary Gland mRNA", "Pituitary Gland mRNA" - ], + ], [ - "Prostate mRNA", + "Prostate mRNA", "Prostate mRNA" - ], + ], [ - "Putamen mRNA", + "Putamen mRNA", "Putamen mRNA" - ], + ], [ - "Skin - Not Sun Exposed (Suprapubic) mRNA", + "Skin - Not Sun Exposed (Suprapubic) mRNA", "Skin - Not Sun Exposed (Suprapubic) mRNA" - ], + ], [ - "Skin - Sun Exposed (Lower leg) mRNA", + "Skin - Sun Exposed (Lower leg) mRNA", "Skin - Sun Exposed (Lower leg) mRNA" - ], + ], [ - "Spinal Cord mRNA", + "Spinal Cord mRNA", "Spinal Cord mRNA" - ], + ], [ - "Stomach mRNA", + "Stomach mRNA", "Stomach mRNA" - ], + ], [ - "Substantia Nigra mRNA", + "Substantia Nigra mRNA", "Substantia Nigra mRNA" - ], + ], [ - "Testis mRNA", + "Testis mRNA", "Testis mRNA" - ], + ], [ - "Thyroid mRNA", + "Thyroid mRNA", "Thyroid mRNA" - ], + ], [ - "Tibial mRNA", + "Tibial mRNA", "Tibial mRNA" - ], + ], [ - "Uterus mRNA", + "Uterus mRNA", "Uterus mRNA" - ], + ], [ - "Vagina mRNA", + "Vagina mRNA", "Vagina mRNA" - ], + ], [ - "Whole Blood mRNA", + "Whole Blood mRNA", "Whole Blood mRNA" ] - ], + ], "GTEx_v5": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Adipose tissue, subcutaneous mRNA", + "Adipose tissue, subcutaneous mRNA", "Adipose tissue, subcutaneous mRNA" - ], + ], [ - "Adipose tissue, visceral mRNA", + "Adipose tissue, visceral mRNA", "Adipose tissue, visceral mRNA" - ], + ], [ - "Adrenal Gland mRNA", + "Adrenal Gland mRNA", "Adrenal Gland mRNA" - ], + ], [ - "Amygdala mRNA", + "Amygdala mRNA", "Amygdala mRNA" - ], + ], [ - "Anterior Cingulate Cortex mRNA", + "Anterior Cingulate Cortex mRNA", "Anterior Cingulate Cortex mRNA" - ], + ], [ - "Aorta mRNA", + "Aorta mRNA", "Aorta mRNA" - ], + ], [ - "Bladder mRNA", + "Bladder mRNA", "Bladder mRNA" - ], + ], [ - "Bone Marrow mRNA", + "Bone Marrow mRNA", "Bone Marrow mRNA" - ], + ], [ - "Breast - Mammary Tissue mRNA", + "Breast - Mammary Tissue mRNA", "Breast - Mammary Tissue mRNA" - ], + ], [ - "Caudate mRNA", + "Caudate mRNA", "Caudate mRNA" - ], + ], [ - "Cells - EBV-Transformed Lymphocytes mRNA", + "Cells - EBV-Transformed Lymphocytes mRNA", "Cells - EBV-Transformed Lymphocytes mRNA" - ], + ], [ - "Cells - Transformed Fibroblasts mRNA", + "Cells - Transformed Fibroblasts mRNA", "Cells - Transformed Fibroblasts mRNA" - ], + ], [ - "Cerebellar Cortex mRNA", + "Cerebellar Cortex mRNA", "Cerebellar Cortex mRNA" - ], + ], [ - "Cerebellar Hemisphere mRNA", + "Cerebellar Hemisphere mRNA", "Cerebellar Hemisphere mRNA" - ], + ], [ - "Cerebellum mRNA", + "Cerebellum mRNA", "Cerebellum mRNA" - ], + ], [ - "Cervix mRNA", + "Cervix mRNA", "Cervix mRNA" - ], + ], [ - "Colon - Sigmoid mRNA", + "Colon - Sigmoid mRNA", "Colon - Sigmoid mRNA" - ], + ], [ - "Colon - Transverse mRNA", + "Colon - Transverse mRNA", "Colon - Transverse mRNA" - ], + ], [ - "Coronary mRNA", + "Coronary mRNA", "Coronary mRNA" - ], + ], [ - "Esophagus - Gastroesophageal mRNA", + "Esophagus - Gastroesophageal mRNA", "Esophagus - Gastroesophageal mRNA" - ], + ], [ - "Esophagus - Mucosa mRNA", + "Esophagus - Mucosa mRNA", "Esophagus - Mucosa mRNA" - ], + ], [ - "Esophagus - Muscularis mRNA", + "Esophagus - Muscularis mRNA", "Esophagus - Muscularis mRNA" - ], + ], [ - "Fallopian Tube mRNA", + "Fallopian Tube mRNA", "Fallopian Tube mRNA" - ], + ], [ - "Frontal Cortex mRNA", + "Frontal Cortex mRNA", "Frontal Cortex mRNA" - ], + ], [ - "Heart - Atrial Appendage mRNA", + "Heart - Atrial Appendage mRNA", "Heart - Atrial Appendage mRNA" - ], + ], [ - "Heart - Left Ventricle mRNA", + "Heart - Left Ventricle mRNA", "Heart - Left Ventricle mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Hypothalamus mRNA", + "Hypothalamus mRNA", "Hypothalamus mRNA" - ], + ], [ - "Kidney mRNA", + "Kidney mRNA", "Kidney mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Lung mRNA", + "Lung mRNA", "Lung mRNA" - ], + ], [ - "Muscle mRNA", + "Muscle mRNA", "Muscle mRNA" - ], + ], [ - "Nerve - Tibial mRNA", + "Nerve - Tibial mRNA", "Nerve - Tibial mRNA" - ], + ], [ - "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA", "Nucleus Accumbens mRNA" - ], + ], [ - "Ovary mRNA", + "Ovary mRNA", "Ovary mRNA" - ], + ], [ - "Pancreas mRNA", + "Pancreas mRNA", "Pancreas mRNA" - ], + ], [ - "Pituitary Gland mRNA", + "Pituitary Gland mRNA", "Pituitary Gland mRNA" - ], + ], [ - "Prostate mRNA", + "Prostate mRNA", "Prostate mRNA" - ], + ], [ - "Putamen mRNA", + "Putamen mRNA", "Putamen mRNA" - ], + ], [ - "Salivary Gland mRNA", + "Salivary Gland mRNA", "Salivary Gland mRNA" - ], + ], [ - "Skin - Not Sun Exposed (Suprapubic) mRNA", + "Skin - Not Sun Exposed (Suprapubic) mRNA", "Skin - Not Sun Exposed (Suprapubic) mRNA" - ], + ], [ - "Skin - Sun Exposed (Lower leg) mRNA", + "Skin - Sun Exposed (Lower leg) mRNA", "Skin - Sun Exposed (Lower leg) mRNA" - ], + ], [ - "Small Intestine - Terminal Ileum mRNA", + "Small Intestine - Terminal Ileum mRNA", "Small Intestine - Terminal Ileum mRNA" - ], + ], [ - "Spinal Cord mRNA", + "Spinal Cord mRNA", "Spinal Cord mRNA" - ], + ], [ - "Spleen mRNA", + "Spleen mRNA", "Spleen mRNA" - ], + ], [ - "Stomach mRNA", + "Stomach mRNA", "Stomach mRNA" - ], + ], [ - "Substantia Nigra mRNA", + "Substantia Nigra mRNA", "Substantia Nigra mRNA" - ], + ], [ - "Testis mRNA", + "Testis mRNA", "Testis mRNA" - ], + ], [ - "Thyroid mRNA", + "Thyroid mRNA", "Thyroid mRNA" - ], + ], [ - "Tibial mRNA", + "Tibial mRNA", "Tibial mRNA" - ], + ], [ - "Uterus mRNA", + "Uterus mRNA", "Uterus mRNA" - ], + ], [ - "Vagina mRNA", + "Vagina mRNA", "Vagina mRNA" - ], + ], [ - "Whole Blood mRNA", + "Whole Blood mRNA", "Whole Blood mRNA" ] - ], + ], "HB": [ [ - "Cerebellum mRNA", + "Cerebellum mRNA", "Cerebellum mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" - ], + ], [ - "Primary Visual Cortex mRNA", + "Primary Visual Cortex mRNA", "Primary Visual Cortex mRNA" ] - ], + ], "HCP": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "HLC": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "HLT": [ [ - "Lung mRNA", + "Lung mRNA", "Lung mRNA" ] - ], + ], "HSB": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Amygdala mRNA", + "Amygdala mRNA", "Amygdala mRNA" - ], + ], [ - "Cerebellar Cortex mRNA", + "Cerebellar Cortex mRNA", "Cerebellar Cortex mRNA" - ], + ], [ - "Dorsolateral Prefrontal Cortex mRNA", + "Dorsolateral Prefrontal Cortex mRNA", "Dorsolateral Prefrontal Cortex mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Inferior Temporal Cortex mRNA", + "Inferior Temporal Cortex mRNA", "Inferior Temporal Cortex mRNA" - ], + ], [ - "Medial Prefrontal Cortex mRNA", + "Medial Prefrontal Cortex mRNA", "Medial Prefrontal Cortex mRNA" - ], + ], [ - "Mediodorsal Nucleus of Thalamus mRNA", + "Mediodorsal Nucleus of Thalamus mRNA", "Mediodorsal Nucleus of Thalamus mRNA" - ], + ], [ - "Orbital Prefrontal Cortex mRNA", + "Orbital Prefrontal Cortex mRNA", "Orbital Prefrontal Cortex mRNA" - ], + ], [ - "Posterior Inferior Parietal Cortex mRNA", + "Posterior Inferior Parietal Cortex mRNA", "Posterior Inferior Parietal Cortex mRNA" - ], + ], [ - "Posterior Superior Temporal Cortex mRNA", + "Posterior Superior Temporal Cortex mRNA", "Posterior Superior Temporal Cortex mRNA" - ], + ], [ - "Primary Auditory (A1) Cortex mRNA", + "Primary Auditory (A1) Cortex mRNA", "Primary Auditory (A1) Cortex mRNA" - ], + ], [ - "Primary Motor (M1) Cortex mRNA", + "Primary Motor (M1) Cortex mRNA", "Primary Motor (M1) Cortex mRNA" - ], + ], [ - "Primary Somatosensory (S1) Cortex mRNA", + "Primary Somatosensory (S1) Cortex mRNA", "Primary Somatosensory (S1) Cortex mRNA" - ], + ], [ - "Primary Visual Cortex mRNA", + "Primary Visual Cortex mRNA", "Primary Visual Cortex mRNA" - ], + ], [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" - ], + ], [ - "Ventrolateral Prefrontal Cortex mRNA", + "Ventrolateral Prefrontal Cortex mRNA", "Ventrolateral Prefrontal Cortex mRNA" ] - ], + ], "Islets-Gerling": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "TIGEM-Retina-RNA-Seq": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Retina mRNA", + "Retina mRNA", "Retina mRNA" ] ] - }, + }, "mouse": { "AIL": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" - ], + ], [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" ] - ], + ], "AIL-LGSM-F34-A": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "AIL-LGSM-F34-F39-43-GBS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "AIL-LGSM-F34-GBS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "AIL-LGSM-F39-43-GBS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "AKXD": [ [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Mammary Tumors mRNA", + "Mammary Tumors mRNA", "Mammary Tumors mRNA" ] - ], + ], "AXBXA": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Bone Femur mRNA", + "Bone Femur mRNA", "Bone Femur mRNA" - ], + ], [ - "Eye mRNA", + "Eye mRNA", "Eye mRNA" - ], + ], [ - "Heart mRNA", + "Heart mRNA", "Heart mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "B6BTBRF2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "B6D2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "B6D2F2": [ [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" ] - ], + ], "B6D2F2-PSU": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "B6D2RI": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" ] - ], + ], "BDF2-1999": [ [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "BDF2-2005": [ [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" ] - ], + ], "BHF2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Adipose mRNA", + "Adipose mRNA", "Adipose mRNA" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "BHHBF2": [ [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Adipose mRNA", + "Adipose mRNA", "Adipose mRNA" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Muscle mRNA", + "Muscle mRNA", "Muscle mRNA" ] - ], + ], "BXD": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Adipose mRNA", + "Adipose mRNA", "Adipose mRNA" - ], + ], [ - "Adipose Proteome", + "Adipose Proteome", "Adipose Proteome" - ], + ], [ - "Adrenal Gland mRNA", + "Adrenal Gland mRNA", "Adrenal Gland mRNA" - ], + ], [ - "Amygdala mRNA", + "Amygdala mRNA", "Amygdala mRNA" - ], + ], [ - "Bone Femur mRNA", + "Bone Femur mRNA", "Bone Femur mRNA" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" - ], + ], [ - "Cartilage mRNA", + "Cartilage mRNA", "Cartilage mRNA" - ], + ], [ - "Cerebellum mRNA", + "Cerebellum mRNA", "Cerebellum mRNA" - ], + ], [ - "Eye mRNA", + "Eye mRNA", "Eye mRNA" - ], + ], [ - "Fecal Metabolome", + "Fecal Metabolome", "Fecal Metabolome" - ], + ], [ - "Gastrointestinal mRNA", + "Gastrointestinal mRNA", "Gastrointestinal mRNA" - ], + ], [ - "Heart mRNA", + "Heart mRNA", "Heart mRNA" - ], + ], [ - "Hematopoietic Cells mRNA", + "Hematopoietic Cells mRNA", "Hematopoietic Cells mRNA" - ], + ], [ - "Hippocampal Precursor Cells mRNA", + "Hippocampal Precursor Cells mRNA", "Hippocampal Precursor Cells mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Hypothalamus mRNA", + "Hypothalamus mRNA", "Hypothalamus mRNA" - ], + ], [ - "Kidney mRNA", + "Kidney mRNA", "Kidney mRNA" - ], + ], [ - "Liver Metabolome", + "Liver Metabolome", "Liver Metabolome" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Liver Proteome", + "Liver Proteome", "Liver Proteome" - ], + ], [ - "Lung mRNA", + "Lung mRNA", "Lung mRNA" - ], + ], [ - "Midbrain mRNA", + "Midbrain mRNA", "Midbrain mRNA" - ], + ], [ - "Muscle mRNA", + "Muscle mRNA", "Muscle mRNA" - ], + ], [ - "Neocortex mRNA", + "Neocortex mRNA", "Neocortex mRNA" - ], + ], [ - "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA", "Nucleus Accumbens mRNA" - ], + ], [ - "Pituitary Gland mRNA", + "Pituitary Gland mRNA", "Pituitary Gland mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" - ], + ], [ - "Retina mRNA", + "Retina mRNA", "Retina mRNA" - ], + ], [ - "Spleen mRNA", + "Spleen mRNA", "Spleen mRNA" - ], + ], [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" - ], + ], [ - "T Cell (helper) mRNA", + "T Cell (helper) mRNA", "T Cell (helper) mRNA" - ], + ], [ - "T Cell (regulatory) mRNA", + "T Cell (regulatory) mRNA", "T Cell (regulatory) mRNA" - ], + ], [ - "Ventral Tegmental Area mRNA", + "Ventral Tegmental Area mRNA", "Ventral Tegmental Area mRNA" ] - ], + ], "BXD-Bone": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "BXD-Harvested": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "BXD300": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "BXH": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Bone Femur mRNA", + "Bone Femur mRNA", "Bone Femur mRNA" - ], + ], [ - "Cartilage mRNA", + "Cartilage mRNA", "Cartilage mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" ] - ], + ], "C57BL-6JxC57BL-6NJF2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "CFW": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" - ], + ], [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" ] - ], + ], "CIE-INIA": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "LCM Brain Regions mRNA", + "LCM Brain Regions mRNA", "LCM Brain Regions mRNA" ] - ], + ], "CIE-RMA": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Midbrain mRNA", + "Midbrain mRNA", "Midbrain mRNA" ] - ], + ], "CMS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "CTB6F2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Adipose mRNA", + "Adipose mRNA", "Adipose mRNA" - ], + ], [ - "Brain mRNA", + "Brain mRNA", "Brain mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Muscle mRNA", + "Muscle mRNA", "Muscle mRNA" ] - ], + ], "CXB": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Heart mRNA", + "Heart mRNA", "Heart mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Spleen mRNA", + "Spleen mRNA", "Spleen mRNA" ] - ], + ], "D2GM": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Retina mRNA", + "Retina mRNA", "Retina mRNA" ] - ], + ], "HS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Lung mRNA", + "Lung mRNA", "Lung mRNA" ] - ], + ], "HS-CC": [ [ - "Striatum mRNA", + "Striatum mRNA", "Striatum mRNA" ] - ], + ], "LXS": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Prefrontal Cortex mRNA", + "Prefrontal Cortex mRNA", "Prefrontal Cortex mRNA" ] - ], + ], "Linsenbardt-Boehm": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "MDP": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Bone Femur mRNA", + "Bone Femur mRNA", "Bone Femur mRNA" - ], + ], [ - "Dorsal Root Ganglia mRNA", + "Dorsal Root Ganglia mRNA", "Dorsal Root Ganglia mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Spleen mRNA", + "Spleen mRNA", "Spleen mRNA" ] - ], + ], "NZBXFVB-N2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Mammary Tumors mRNA", + "Mammary Tumors mRNA", "Mammary Tumors mRNA" ] - ], + ], "Retina-RGC-Rheaume": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Retina Single-cell RNA-Seq", + "Retina Single-cell RNA-Seq", "Retina Single-cell RNA-Seq" ] - ], + ], "SOTNOT-OHSU": [ [ - "Genotypes", + "Genotypes", "Genotypes" ] ] - }, + }, "poplar": { "Poplar": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] ] - }, + }, "rat": { + "HRDP": [ + [ + "Phenotypes", + "Phenotypes" + ], + [ + "Genotypes", + "Genotypes" + ] + ], "HSNIH-Palmer": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Infralimbic Cortex mRNA", + "Infralimbic Cortex mRNA", "Infralimbic Cortex mRNA" - ], + ], [ - "Lateral Habenula mRNA", + "Lateral Habenula mRNA", "Lateral Habenula mRNA" - ], + ], [ - "Nucleus Accumbens mRNA", + "Nucleus Accumbens mRNA", "Nucleus Accumbens mRNA" - ], + ], [ - "Orbitofrontal Cortex mRNA", + "Orbitofrontal Cortex mRNA", "Orbitofrontal Cortex mRNA" - ], + ], [ - "Prelimbic Cortex mRNA", + "Prelimbic Cortex mRNA", "Prelimbic Cortex mRNA" ] - ], + ], "HSNIH-RGSMC": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] - ], + ], "HXBBXH": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" - ], + ], [ - "Adipose mRNA", + "Adipose mRNA", "Adipose mRNA" - ], + ], [ - "Adrenal Gland mRNA", + "Adrenal Gland mRNA", "Adrenal Gland mRNA" - ], + ], [ - "Heart mRNA", + "Heart mRNA", "Heart mRNA" - ], + ], [ - "Hippocampus mRNA", + "Hippocampus mRNA", "Hippocampus mRNA" - ], + ], [ - "Kidney mRNA", + "Kidney mRNA", "Kidney mRNA" - ], + ], [ - "Liver mRNA", + "Liver mRNA", "Liver mRNA" - ], + ], [ - "Peritoneal Fat mRNA", + "Peritoneal Fat mRNA", "Peritoneal Fat mRNA" ] - ], + ], "SRxSHRSPF2": [ [ - "Eye mRNA", + "Eye mRNA", "Eye mRNA" ] ] - }, + }, "soybean": { "J12XJ58F11": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" - ], + ], [ - "Genotypes", + "Genotypes", "Genotypes" ] - ], + ], "J12XJ58F2": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] ] - }, + }, "tomato": { "LXP": [ [ - "Phenotypes", + "Phenotypes", "Phenotypes" ] ] diff --git a/wqflask/wqflask/templates/show_trait_details.html b/wqflask/wqflask/templates/show_trait_details.html index 63a87825..f6624f77 100644 --- a/wqflask/wqflask/templates/show_trait_details.html +++ b/wqflask/wqflask/templates/show_trait_details.html @@ -182,6 +182,12 @@ </a> {% endif %} + {% if uniprot_link %} + <a href="{{ uniprot_link }}" target="_blank" title="UniProt"> + UniProt + </a> + + {% endif %} </td> </tr> {% endif %} |