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-rw-r--r--wqflask/wqflask/static/new/css/show_trait.css54
-rw-r--r--wqflask/wqflask/static/new/javascript/show_trait.js42
-rw-r--r--wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js2
3 files changed, 70 insertions, 28 deletions
diff --git a/wqflask/wqflask/static/new/css/show_trait.css b/wqflask/wqflask/static/new/css/show_trait.css
index 2ac8ae5a..a04b2243 100644
--- a/wqflask/wqflask/static/new/css/show_trait.css
+++ b/wqflask/wqflask/static/new/css/show_trait.css
@@ -63,8 +63,9 @@ table.dataTable.cell-border tbody tr td:first-child {
}
table.dataTable tbody td.column_name-Checkbox {
- padding: 3px 0px 0px 9px;
+ padding: 1px 0px 0px 9px; /* The left padding here is because text-align:center does not seem to be working properly. No idea why this is. */
text-align: center;
+ vertical-align: middle;
}
table.dataTable tbody td.column_name-Index {
@@ -112,10 +113,6 @@ div.correlation-options {
width: 70px;
}
-span.p-range-container {
- display: inline;
-}
-
div.p-range-slider {
width: 200px;
margin-left: 15px;
@@ -135,7 +132,7 @@ span.p-range-upper {
margin: 5px 0px 0px 170px;
}
-.corr-location {
+input.corr-location {
width: 50px;
display: inline;
}
@@ -208,4 +205,49 @@ div.select-covar-div {
.rqtl-description {
padding-top: 40px;
display: none;
+}
+
+div.sample-table-container {
+ padding-bottom: 10px;
+}
+
+div.sample-table-search-container {
+ display: inline;
+ height: 40px;
+}
+
+input.sample-table-search {
+ width: 200px;
+ display: inline;
+ float: left;
+ vertical-align: top;
+}
+
+div.sample-table-export-container {
+ padding-left: 10px;
+ display: inline;
+}
+
+div.export-code-container {
+ width: 600px;
+ display: none;
+}
+
+.export-code-field {
+ padding-top: 0px;
+ padding-bottom: 0px;
+ height: 150px;
+}
+
+table.sample-table {
+ float: left;
+ width:100%;
+}
+
+input.trait-value-input {
+ text-align: right;
+}
+
+div.inline-div {
+ display: inline;
} \ No newline at end of file
diff --git a/wqflask/wqflask/static/new/javascript/show_trait.js b/wqflask/wqflask/static/new/javascript/show_trait.js
index 18c9b8cf..c0ab639e 100644
--- a/wqflask/wqflask/static/new/javascript/show_trait.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait.js
@@ -446,14 +446,14 @@ edit_data_change = function() {
rows = $("#" + table).find('tr');
for (_j = 0, _len1 = rows.length; _j < _len1; _j++) {
row = rows[_j];
- name = $(row).find('.edit_sample_sample_name').html();
+ name = $(row).find('.edit-sample-sample-name').html();
name = $.trim(name);
- real_value = $(row).find('.edit_sample_value').val();
- checkbox = $(row).find(".edit_sample_checkbox");
+ real_value = $(row).find('.edit-sample-value').val();
+ checkbox = $(row).find(".edit-sample-checkbox");
if (is_number(real_value) && real_value !== "") {
real_value = parseFloat(real_value);
sample_sets[table].add_value(real_value);
- real_variance = $(row).find('.edit_sample_se').val();
+ real_variance = $(row).find('.edit-sample-se').val();
if (is_number(real_variance)) {
real_variance = parseFloat(real_variance);
} else {
@@ -567,7 +567,7 @@ block_by_attribute_value = function() {
var row;
if ($.trim($(element).text()) === exclude_by_value) {
row = $(element).parent('tr');
- return $(row).find(".trait_value_input").val("x");
+ return $(row).find(".trait-value-input").val("x");
}
};
})(this));
@@ -614,9 +614,9 @@ block_by_index = function() {
for (_k = 0, _len1 = index_list.length; _k < _len1; _k++) {
index = index_list[_k];
if ($('#block_group').val() === "primary") {
- _results.push($('#samples_primary').find('td.column_name-Index').filter(function() { return $(this).text() == index.toString() }).closest('tr').find('.trait_value_input').val("x"));
+ _results.push($('#samples_primary').find('td.column_name-Index').filter(function() { return $(this).text() == index.toString() }).closest('tr').find('.trait-value-input').val("x"));
} else if ($('#block_group').val() === "other") {
- _results.push($('#samples_other').find('td.column_name-Index').filter(function() { return $(this).text() == index.toString() }).closest('tr').find('.trait_value_input').val("x"));
+ _results.push($('#samples_other').find('td.column_name-Index').filter(function() { return $(this).text() == index.toString() }).closest('tr').find('.trait-value-input').val("x"));
} else {
_results.push(void 0);
}
@@ -628,7 +628,7 @@ $('#block_by_index').click(block_by_index);
hide_no_value = function() {
return $('.value_se').each((function(_this) {
return function(_index, element) {
- if ($(element).find('.trait_value_input').val() === 'x') {
+ if ($(element).find('.trait-value-input').val() === 'x') {
return $(element).hide();
}
};
@@ -638,7 +638,7 @@ $('#hide_no_value').click(hide_no_value);
block_outliers = function() {
return $('.outlier').each((function(_this) {
return function(_index, element) {
- return $(element).find('.trait_value_input').val('x');
+ return $(element).find('.trait-value-input').val('x');
};
})(this));
};
@@ -646,7 +646,7 @@ $('#block_outliers').click(block_outliers);
reset_samples_table = function() {
$('input[name="transform"]').val("");
$('span[name="transform_text"]').text("")
- return $('.trait_value_input').each((function(_this) {
+ return $('.trait-value-input').each((function(_this) {
return function(_index, element) {
$(element).val($(element).data('value'));
return $(element).parents('.value_se').show();
@@ -659,7 +659,7 @@ $('.reset').click(function() {
});
log2_normalize_data = function(zero_to_one_vals_exist) {
- return $('.trait_value_input').each((function(_this) {
+ return $('.trait-value-input').each((function(_this) {
return function(_index, element) {
current_value = $(element).data("value")
if(isNaN(current_value)) {
@@ -676,7 +676,7 @@ log2_normalize_data = function(zero_to_one_vals_exist) {
};
log10_normalize_data = function(zero_to_one_vals_exist) {
- return $('.trait_value_input').each((function(_this) {
+ return $('.trait-value-input').each((function(_this) {
return function(_index, element) {
current_value = $(element).data("value")
if(isNaN(current_value)) {
@@ -694,7 +694,7 @@ log10_normalize_data = function(zero_to_one_vals_exist) {
sqrt_normalize_data = function() {
- return $('.edit_sample_value').each((function(_this) {
+ return $('.edit-sample-value').each((function(_this) {
return function(_index, element) {
current_value = parseFloat($(element).data("value")) + 1;
if(isNaN(current_value)) {
@@ -708,7 +708,7 @@ sqrt_normalize_data = function() {
};
invert_data = function() {
- return $('.edit_sample_value').each((function(_this) {
+ return $('.edit-sample-value').each((function(_this) {
return function(_index, element) {
current_value = parseFloat($(element).val());
if(isNaN(current_value)) {
@@ -723,7 +723,7 @@ invert_data = function() {
qnorm_data = function() {
- return $('.edit_sample_value').each((function(_this) {
+ return $('.edit-sample-value').each((function(_this) {
return function(_index, element) {
current_value = parseFloat($(element).data("value")) + 1;
if(isNaN(current_value)) {
@@ -737,7 +737,7 @@ qnorm_data = function() {
};
zscore_data = function() {
- return $('.edit_sample_value').each((function(_this) {
+ return $('.edit-sample-value').each((function(_this) {
return function(_index, element) {
current_value = parseFloat($(element).data("value")) + 1;
if(isNaN(current_value)) {
@@ -752,7 +752,7 @@ zscore_data = function() {
check_for_zero_to_one_vals = function() {
zero_to_one_vals_exist = false
- $('.trait_value_input').each(function() {
+ $('.trait-value-input').each(function() {
current_value = $(this).data("value")
if(isNaN(current_value)) {
return true;
@@ -833,7 +833,7 @@ $('#normalize').hover(function(){
$('#normalize').click(normalize_data)
switch_qnorm_data = function() {
- return $('.trait_value_input').each((function(_this) {
+ return $('.trait-value-input').each((function(_this) {
return function(_index, element) {
transform_val = $(element).data('transform')
if (transform_val != "") {
@@ -852,9 +852,9 @@ get_sample_table_data = function(table_name) {
var attribute_info, key, row_data, _ref;
row_data = {};
row_data.name = $.trim($(element).find('.column_name-Sample').text());
- row_data.value = $(element).find('.edit_sample_value:eq(0)').val();
- if ($(element).find('.edit_sample_se').length > 0) {
- row_data.se = $(element).find('.edit_sample_se').val();
+ row_data.value = $(element).find('.edit-sample-value:eq(0)').val();
+ if ($(element).find('.edit-sample-se').length > 0) {
+ row_data.se = $(element).find('.edit-sample-se').val();
}
if ($(element).find('.edit_sample_num_cases').length > 0) {
row_data.num_cases = $(element).find('.edit_sample_num_cases').val();
diff --git a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
index 49d72193..a48cfdaa 100644
--- a/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
+++ b/wqflask/wqflask/static/new/javascript/show_trait_mapping_tools.js
@@ -58,7 +58,7 @@
block_outliers = function() {
return $('.outlier').each((function(_this) {
return function(_index, element) {
- return $(element).find('.trait_value_input').val('x');
+ return $(element).find('.trait-value-input').val('x');
};
})(this));
};