diff options
Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/ctl/ctl_analysis.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/wqflask/wqflask/ctl/ctl_analysis.py b/wqflask/wqflask/ctl/ctl_analysis.py index 13f08a0f..3159ad7f 100644 --- a/wqflask/wqflask/ctl/ctl_analysis.py +++ b/wqflask/wqflask/ctl/ctl_analysis.py @@ -46,10 +46,10 @@ class CTL(object): #log = r_file("/tmp/genenetwork_wcgna.log", open = "wt") #r_sink(log) # Uncomment the r_sink() commands to log output from stdout/stderr to a file #r_sink(log, type = "message") - r_library("ctl") # Load WGCNA - Should only be done once, since it is quite expensive + r_library("ctl") # Load CTL - Should only be done once, since it is quite expensive r_options(stringsAsFactors = False) print("Initialization of CTL done, package loaded in R session") - self.r_CTLscan = ro.r["CTLscan"] # Map the CTLscan function + self.r_CTLscan = ro.r["CTLscan"] # Map the CTLscan function print("Obtained pointers to CTL functions") def run_analysis(self, requestform): @@ -68,6 +68,8 @@ class CTL(object): for strain in trait[0].data: strains.append(strain) self.input[trait[0].name][strain] = trait[0].data[strain].value + + self.results = {} sys.stdout.flush() def render_image(self, results): @@ -79,7 +81,7 @@ class CTL(object): self.results['imgdata'] = bytesarray def process_results(self, results): - print("Processing WGCNA output") + print("Processing CTL output") template_vars = {} template_vars["input"] = self.input sys.stdout.flush() |