diff options
Diffstat (limited to 'wqflask/wqflask/templates/index_page_orig.html')
| -rwxr-xr-x | wqflask/wqflask/templates/index_page_orig.html | 69 |
1 files changed, 34 insertions, 35 deletions
diff --git a/wqflask/wqflask/templates/index_page_orig.html b/wqflask/wqflask/templates/index_page_orig.html index 9fba0e31..9ac267f1 100755 --- a/wqflask/wqflask/templates/index_page_orig.html +++ b/wqflask/wqflask/templates/index_page_orig.html @@ -7,15 +7,15 @@ <header class="jumbotron subhead" id="overview"> <div class="container"> <h1>GeneNetwork</h1> - <p class="lead">Open source bioinformatics for systems genetics</p> + <p class="lead">Open source bioinformatics for systems genetics</p> </div> </header> --> <div class="container-fluid"> - + {{ flash_me() }} - + <div class="row" style="width: 1400px !important;"> <div class="col-xs-5"> @@ -90,7 +90,7 @@ <!-- GET ANY HELP --> <div class="form-group"> <label for="btsearch" class="col-xs-1 control-label" style="width: 65px !important;"></label> - <div class="col-xs-10 controls"> + <div class="col-xs-10 controls"> <div class="col-xs-12 controls"> Enter terms, genes, ID numbers in the <b>Search</b> field.<br> Use <b>*</b> or <b>?</b> wildcards (Cyp*a?, synap*).<br> @@ -113,7 +113,7 @@ <div class="col-xs-10 controls"> <div class="col-xs-2 controls" style="width: 100px !important;"> <input id="btsearch" type="submit" class="btn btn-primary form-control" value="Search"> - </div> + </div> </div> </div> @@ -140,27 +140,27 @@ chromosome 1 between 25 and 30 Mb.</li> <li><b>MEAN=(15 16) LRS=(23 46)</b> in the <b>Combined</b> field finds - highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L" target="_blank">LRS</a> + highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L">LRS</a> linkage between 23 and 46.</li> - <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF" target="_blank"> + <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF"> GeneRIF</a> links.</li> - <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki" target="_blank"> + <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki"> GeneWiki</a> for genes that you or other users have annotated with the word <i>nicotine</i>.</li> <li><b>GO:0045202</b> searches for synapse-associated genes listed in the - <a href="http://www.godatabase.org/cgi-bin/amigo/go.cgi" target="_blank"> + <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202"> Gene Ontology</a>.</li> <li><b>GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)</b> - finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E" target="_blank"> + finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E"> cis eQTL</a> on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.</li> <li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b> - finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E" target="_blank"> + finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E"> trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.</li> </ul> @@ -176,7 +176,7 @@ <h3>Thirty minute tour</h3> <p> Take the 30 minute - GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" target="_blank" class="fs14">tour</a> that includes screen shots and + GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" class="fs14">tour</a> that includes screen shots and typical steps in the analysis. </p> @@ -187,8 +187,8 @@ and Database fields above. </p> - <p>The <a href="/conditionsofUse.html" target="_blank">conditions</a> - and <a href="/statusandContact.html" target="_blank">contact + <p>The <a href="/conditionsofUse.html">conditions</a> + and <a href="/statusandContact.html">contact </a> pages have information on the status of data sets and advice on their use and citation.</p> @@ -197,29 +197,28 @@ <section id="websites"> <div class="page-header"> - <h1>Affiliates and mirrors</h1> + <h2>Links</h2> </div> - <h3>Websites affiliated with GeneNetwork</h3> + <h3>GeneNetwork v2:</h3> + <ul> + <li><a href="http://gn2.genenetwork.org/">Main website</a> at UTHSC</li> + <li><a href="http://test-gn2.genenetwork.org/">Testing website</a> at UTHSC</li> + </ul> + <h3>GeneNetwork v1:</h3> <ul> - <li><a href="http://ucscbrowser.genenetwork.org/" target="_blank">Genome + <li><a href="http://www.genenetwork.org/">Main website</a> at UTHSC</li> + <li><a href="http://genenetwork.helmholtz-hzi.de/">Website</a> at the HZI (Germany)</li> + <li><a href="http://ec2.genenetwork.org/">Amazon + Cloud (EC2)</a></li> + </ul> + <h3>Affiliates</h3> + <ul> + <li><a href="http://ucscbrowser.genenetwork.org/">Genome browser</a> at UTHSC</li> - <li><a href="http://galaxy.genenetwork.org/" target="_blank">Galaxy</a> at + <li><a href="http://galaxy.genenetwork.org/">Galaxy</a> at UTHSC</li> - <li>GeneNetwork 1 at <a href="http://ec2.genenetwork.org/" target="_blank">Amazon - Cloud (EC2)</a></li> - - <li>GeneNetwork 1 Source Code at <a href="http://sourceforge.net/projects/genenetwork/" target="_blank">SourceForge</a></li> - - <li>GeneNetwork 2 Source Code at <a href="https://github.com/genenetwork/genenetwork2" target="_blank">GitHub</a></li> - </ul> - <h3>GN1 Mirror and development sites</h3> - - <ul> - <li><a href="http://www.genenetwork.org/" target="_blank">Main GN1 site at UTHSC</a> (main site)</li> - <li><a href="http://genenetwork.helmholtz-hzi.de/" target="_blank">Germany at the HZI</a></li> - <li><a href="http://genenetwork.memphis.edu/" target="_blank">Memphis at the U of M</a></li> </ul> </section> @@ -256,7 +255,7 @@ <h3>User Guide</h3> <h5>Read the - <a href="http://www.genenetwork.org/index4.html" target="_blank"> + <a href="http://www.genenetwork.org/index4.html"> user guide</a>.</h5> </section>--> @@ -272,10 +271,10 @@ <script> function pressed(e) { // Has the enter key been pressed? - if ( (window.event ? event.keyCode : e.which) == 13) { + if ( (window.event ? event.keyCode : e.which) == 13) { // If enter key has been pressed and the search fields are non-empty - // manually submit the <form> - if( event.target.value.trim() != "" ) { + // manually submit the <form> + if( event.target.value.trim() != "" ) { document.forms[1].submit(); } } |