diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index 324c4f2c..e3e8659c 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -25,6 +25,7 @@ from lmm import gn2_load_redis, calculate_kinship_old from kinship import kinship, kinship_full import genotype import phenotype +from standalone import uses usage = """ python runlmm.py [options] command @@ -193,7 +194,7 @@ elif cmd == 'kinship': k2 = round(K2[0][0],4) print "Genotype",G.shape, "\n", G - K3 = kinship(G.T) + K3 = kinship(G.T,uses) print "third Kinship method",K3.shape,"\n",K3 sys.stderr.write(options.geno+"\n") k3 = round(K3[0][0],4) |