diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 11 |
1 files changed, 8 insertions, 3 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index bed2e39e..525c43fc 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -19,6 +19,7 @@ from optparse import OptionParser import tsvreader +from lmm import gn2_load_redis usage = """ python runlmm.py [options] command @@ -29,6 +30,7 @@ python runlmm.py [options] command Current commands are: parse : only parse input files + redis : use Redis to call into GN2 try --help for more information """ @@ -58,12 +60,15 @@ print "Command: ",cmd if options.kinship: k = tsvreader.kinship(options.kinship) - print len(k) + print k.shape if options.pheno: y = tsvreader.pheno(options.pheno) - print len(y) + print y.shape if options.geno: g = tsvreader.geno(options.geno) - print len(g) + print g.shape + +if cmd == 'redis': + gn2_load_redis('testrun','other',k,y,g.T) |