diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index e3e8659c..6a38da56 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -134,7 +134,7 @@ elif cmd == 'redis': # Emulating the redis setup of GN2 G = g print "Original G",G.shape, "\n", G - if y != None and options.remove_missing_phenotypes: + if y is not None and options.remove_missing_phenotypes: gnt = np.array(g).T Y,g,keep = phenotype.remove_missing(y,g.T,options.verbose) G = g.T @@ -165,7 +165,7 @@ elif cmd == 'redis': assert p1==0.0897, "p1=%f" % p1 assert p2==0.0405, "p2=%f" % p2 if options.geno == 'data/test8000.geno': - assert round(sum(ps)) == 4070 + assert int(sum(ps)) == 4070 assert len(ps) == 8000 elif cmd == 'kinship': G = g |