diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index fc7a4b9d..ef0bdd7e 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -21,7 +21,7 @@ from optparse import OptionParser import sys import tsvreader import numpy as np -from lmm import gn2_load_redis, calculate_kinship_old +from lmm import gn2_load_redis, calculate_kinship_new from kinship import kinship, kinship_full import genotype import phenotype @@ -190,7 +190,7 @@ elif cmd == 'kinship': print "Genotype",G.shape, "\n", G print "first Kinship method",K.shape,"\n",K k1 = round(K[0][0],4) - K2,G = calculate_kinship_old(np.copy(G).T,temp_data=None) + K2,G = calculate_kinship_new(np.copy(G).T,temp_data=None) print "Genotype",G.shape, "\n", G print "GN2 Kinship method",K2.shape,"\n",K2 k2 = round(K2[0][0],4) |