diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 9 |
1 files changed, 6 insertions, 3 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index f5ecddb9..bed2e39e 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -57,10 +57,13 @@ cmd = args[0] print "Command: ",cmd if options.kinship: - k = tsvreader.kinship() + k = tsvreader.kinship(options.kinship) + print len(k) if options.pheno: - y = tsvreader.pheno() + y = tsvreader.pheno(options.pheno) + print len(y) if options.geno: - g = tsvreader.geno() + g = tsvreader.geno(options.geno) + print len(g) |