diff options
Diffstat (limited to 'wqflask/wqflask/do_search.py')
-rw-r--r-- | wqflask/wqflask/do_search.py | 27 |
1 files changed, 21 insertions, 6 deletions
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py index bbb16054..4ba35d63 100644 --- a/wqflask/wqflask/do_search.py +++ b/wqflask/wqflask/do_search.py @@ -67,13 +67,21 @@ class QuickMrnaAssaySearch(DoSearch): DoSearch.search_types['quick_mrna_assay'] = "QuickMrnaAssaySearch" - base_query = """SELECT ProbeSet.Name as ProbeSet_Name, + base_query = """SELECT Species.Name as Species_Name, + ProbeSetFreeze.Name as DataSet_Name, + ProbeSetFreeze.FullName as DataSet_FullName, + ProbeSet.Name as ProbeSet_Name, ProbeSet.Symbol as ProbeSet_Symbol, ProbeSet.description as ProbeSet_Description, ProbeSet.Chr_num as ProbeSet_Chr_Num, ProbeSet.Mb as ProbeSet_Mb, ProbeSet.name_num as ProbeSet_name_num - FROM ProbeSet """ + FROM ProbeSet, + ProbeSetXRef, + ProbeSetFreeze, + ProbeFreeze, + InbredSet, + Species """ header_fields = ['', 'Record ID', @@ -88,7 +96,12 @@ class QuickMrnaAssaySearch(DoSearch): ProbeSet.description, ProbeSet.symbol, ProbeSet.alias) - AGAINST ('%s' IN BOOLEAN MODE)) + AGAINST ('%s' IN BOOLEAN MODE)) and + ProbeSet.Id = ProbeSetXRef.ProbeSetId and + ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id and + ProbeSetFreeze.ProbeFreezeId = ProbeFreeze.Id and + ProbeFreeze.InbredSetId = InbredSet.Id and + InbredSet.SpeciesId = Species.Id """ % (escape(self.search_term[0])) print("final query is:", pf(query)) @@ -159,7 +172,7 @@ class MrnaAssaySearch(DoSearch): print("final query is:", pf(query)) return self.execute(query) - + class PhenotypeSearch(DoSearch): """A search within a phenotype dataset""" @@ -252,7 +265,8 @@ class PhenotypeSearch(DoSearch): query = self.compile_final_query(where_clause = self.get_fields_clause()) return self.execute(query) - + + class QuickPhenotypeSearch(PhenotypeSearch): """A search across all phenotype datasets""" @@ -304,7 +318,8 @@ class QuickPhenotypeSearch(PhenotypeSearch): with Bench("Doing quick phenotype search"): results = self.execute(query) - return results + return results + class GenotypeSearch(DoSearch): """A search within a genotype dataset""" |