diff options
Diffstat (limited to 'wqflask/wqflask/do_search.py')
| -rwxr-xr-x | wqflask/wqflask/do_search.py | 24 |
1 files changed, 12 insertions, 12 deletions
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py index 0e2dd27a..d89facfe 100755 --- a/wqflask/wqflask/do_search.py +++ b/wqflask/wqflask/do_search.py @@ -45,7 +45,7 @@ class DoSearch(object): def handle_wildcard(self, str): keyword = str.strip() keyword.replace("*",".*") - keyword.replace("?",".") + keyword.replace("?",".") return keyword @@ -73,7 +73,7 @@ class DoSearch(object): search_type_string += '_' + search_type['key'] print("search_type_string is:", search_type_string) - + if search_type_string in cls.search_types: return cls.search_types[search_type_string] else: @@ -154,7 +154,7 @@ class MrnaAssaySearch(DoSearch): else: match_clause = "" - where_clause = (match_clause + + where_clause = (match_clause + """ProbeSet.Id = ProbeSetXRef.ProbeSetId and ProbeSetXRef.ProbeSetFreezeId = %s """ % (escape(str(self.dataset.id)))) @@ -315,7 +315,7 @@ class PhenotypeSearch(DoSearch): print("final query is:", pf(query)) - + return self.execute(query) def run(self): @@ -485,7 +485,7 @@ class WikiSearch(MrnaAssaySearch): and (GeneRIF.comment REGEXP '%s' or GeneRIF.initial = '%s') """ % (self.dataset.type, "[[:<:]]"+str(self.search_term[0])+"[[:>:]]", - str(self.search_term[0])) + str(self.search_term[0])) return where_clause def run(self): @@ -590,7 +590,7 @@ class LrsSearch(DoSearch): where_clause = """ %sXRef.LRS %s %s """ % self.mescape(self.dataset.type, self.search_operator, self.search_term[0]) - + return where_clause @@ -604,7 +604,7 @@ class LrsSearch(DoSearch): return self.execute(self.query) class MrnaLrsSearch(LrsSearch, MrnaAssaySearch): - + DoSearch.search_types['ProbeSet_LRS'] = 'MrnaLrsSearch' def run(self): @@ -617,7 +617,7 @@ class MrnaLrsSearch(LrsSearch, MrnaAssaySearch): return self.execute(self.query) class PhenotypeLrsSearch(LrsSearch, PhenotypeSearch): - + DoSearch.search_types['Publish_LRS'] = 'PhenotypeLrsSearch' def run(self): @@ -699,7 +699,7 @@ class CisTransLrsSearch(DoSearch): ) return where_clause - + class CisLrsSearch(CisTransLrsSearch, MrnaAssaySearch): """ Searches for genes on a particular chromosome with a cis-eQTL within the given LRS values @@ -781,7 +781,7 @@ class MeanSearch(MrnaAssaySearch): # Deal with >, <, >=, and <= where_clause = """ %sXRef.mean %s %s """ % self.mescape(self.dataset.type, self.search_operator, - self.search_term[0]) + self.search_term[0]) return where_clause @@ -790,7 +790,7 @@ class MeanSearch(MrnaAssaySearch): print("where_clause is:", pf(self.where_clause)) self.query = self.compile_final_query(where_clause = self.where_clause) - + return self.query def run(self): @@ -862,7 +862,7 @@ class PositionSearch(DoSearch): def get_chr(self): try: self.chr = int(self.chr) - except: + except: if 'chr' in self.chr: self.chr = int(self.chr.replace('chr', '')) else: |