diff options
Diffstat (limited to 'wqflask/wqflask/do_search.py')
| -rwxr-xr-x | wqflask/wqflask/do_search.py | 32 |
1 files changed, 21 insertions, 11 deletions
diff --git a/wqflask/wqflask/do_search.py b/wqflask/wqflask/do_search.py index 4cd87270..f6f39ab0 100755 --- a/wqflask/wqflask/do_search.py +++ b/wqflask/wqflask/do_search.py @@ -391,25 +391,32 @@ class GenotypeSearch(DoSearch): self.search_term = "[[:<:]]" + self.search_term[0] + "[[:>:]]" for field in self.search_fields: - fields_clause.append('''%s REGEXP "%s"''' % ("%s.%s" % self.mescape(self.dataset.type, + where_clause.append('''%s REGEXP "%s"''' % ("%s.%s" % self.mescape(self.dataset.type, field), self.search_term)) - print("hello ;where_clause is:", pf(fields_clause)) - fields_clause = "(%s) " % ' OR '.join(fields_clause) + print("hello ;where_clause is:", pf(where_clause)) + where_clause = "(%s) " % ' OR '.join(where_clause) - return fields_clause + return where_clause def compile_final_query(self, from_clause = '', where_clause = ''): """Generates the final query string""" from_clause = self.normalize_spaces(from_clause) - query = (self.base_query + - """WHERE %s - and Geno.Id = GenoXRef.GenoId - and GenoXRef.GenoFreezeId = GenoFreeze.Id - and GenoFreeze.Id = %s"""% (where_clause, - escape(str(self.dataset.id)))) + + if self.search_term[0] == "*": + query = (self.base_query + + """WHERE Geno.Id = GenoXRef.GenoId + and GenoXRef.GenoFreezeId = GenoFreeze.Id + and GenoFreeze.Id = %s"""% (escape(str(self.dataset.id)))) + else: + query = (self.base_query + + """WHERE %s + and Geno.Id = GenoXRef.GenoId + and GenoXRef.GenoFreezeId = GenoFreeze.Id + and GenoFreeze.Id = %s"""% (where_clause, + escape(str(self.dataset.id)))) print("query is:", pf(query)) @@ -420,7 +427,10 @@ class GenotypeSearch(DoSearch): #Todo: Zach will figure out exactly what both these lines mean #and comment here - self.query = self.compile_final_query(where_clause = self.get_where_clause()) + if self.search_term[0] == "*": + self.query = self.compile_final_query() + else: + self.query = self.compile_final_query(where_clause = self.get_where_clause()) return self.execute(self.query) |