diff options
Diffstat (limited to 'wqflask/utility')
| -rw-r--r-- | wqflask/utility/tools.py | 29 |
1 files changed, 18 insertions, 11 deletions
diff --git a/wqflask/utility/tools.py b/wqflask/utility/tools.py index dd8c4a1e..955f3bdd 100644 --- a/wqflask/utility/tools.py +++ b/wqflask/utility/tools.py @@ -7,12 +7,12 @@ from wqflask import app def get_setting(command_id,guess=None): """Resolve a setting from the environment or the global settings in - app.config, with get_valid_path is a function checking whether the + app.config, with valid_path is a function checking whether the path points to an expected directory and returns the full path to the binary command guess = os.environ.get('HOME')+'/pylmm' - get_setting('PYLMM_PATH',guess) + valid_path(get_setting('PYLMM_PATH',guess)) first tries the environment variable in +id+, next gets the Flask app setting for the same +id+ and finally does an educated @@ -31,13 +31,13 @@ def get_setting(command_id,guess=None): """ def value(command): if command: - sys.stderr.write("Found path "+command+"\n") + # sys.stderr.write("Found "+command+"\n") return command else: return None # ---- Check whether environment exists - sys.stderr.write("Looking for "+command_id+"\n") + # sys.stderr.write("Looking for "+command_id+"\n") command = value(os.environ.get(command_id)) if not command: # ---- Check whether setting exists in app @@ -45,7 +45,8 @@ def get_setting(command_id,guess=None): if not command: command = value(guess) if not command: - raise Exception(command_id+' path unknown or faulty (update settings.py?). '+command_id+' should point to the path') + raise Exception(command_id+' setting unknown or faulty (update settings.py?).') + sys.stderr.write("Set "+command_id+"="+str(command)+"\n") return command def valid_bin(bin): @@ -127,11 +128,17 @@ def locate_ignore_error(name, subdir=None): def tempdir(): return valid_path(get_setting("TEMPDIR","/tmp")) - # Cached values -PYLMM_COMMAND = pylmm_command() -GEMMA_COMMAND = gemma_command() -PLINK_COMMAND = plink_command() -FLAT_FILES = flat_files() -TEMPDIR = tempdir() +WEBSERVER_MODE = get_setting('WEBSERVER_MODE') +LOGGING = get_setting('LOGGING') +DEBUG_LOG_LEVEL = get_setting('DEBUG_LOG_LEVEL') +LOG_SQL = get_setting('LOG_SQL') in [True,'TRUE','True','true'] +USE_REDIS = get_setting('USE_REDIS') in [True,'TRUE','True','true'] + +PYLMM_COMMAND = pylmm_command() +GEMMA_COMMAND = gemma_command() +PLINK_COMMAND = plink_command() +FLAT_FILES = flat_files() +TEMPDIR = tempdir() + |